51 |
0.001671 |
0.1153 |
b3527 |
yhjJ |
-13.34 |
0.053290 |
153 -- 204 |
31 -- 75 |
putative periplasmic M16 family chaperone |
|
_____________152_____________________________________________________205\n_____________|_______________________________________________________|\n5'-CUC...UGACC___A___G_____UU___UAUUACCAGGAUA___GA____________CA_____AGGGC...GGC-3'\n______________GAC_ACG_GCAGU__UUU_____________GUU____UCAGGGG_UU__CAUGC\n______________|||_||:_:|||:__||:_____________|||____|||||||_||__|||||\n______________CUG_UGU_UGUCG__AAG_____________CAA____AGUCCCC_AA__GUACG\n3'-UUU...CGUUU___A___G_____UU___CAA_____________AGUG_______U__AG_____AAUAU...GCA-5'\n_____________|_______________________________________________________|\n_____________76______________________________________________________30\n |
189 -- 195 |
41 -- 47 |
-32.6504 kcal/mol |
12.0549 kcal/mol |
7.26183 kcal/mol |
152 205@LB@ | |@LB@5'-CUC...UGACC A G UU UAUUACCAGGAUA GA CA AGGGC...GGC-3'@LB@ GAC ACG GCAGU UUU GUU UCAGGGG UU CAUGC@LB@ ||| ||: :|||: ||: ||| ||||||| || |||||@LB@ CUG UGU UGUCG AAG CAA AGUCCCC AA GUACG@LB@3'-UUU...CGUUU A G UU CAA AGUG U AG AAUAU...GCA-5'@LB@ | |@LB@ 76 30@LB@@LB@@LB@Energy -13.34 kcal/mol@LB@Hybridization Energy -32.6504 kcal/mol@LB@Unfolding Energy - mRNA 12.0549 kcal/mol@LB@Unfolding Energy - sRNA 7.26183 kcal/mol@LB@@LB@Position - mRNA 153 -- 204@LB@Position - sRNA 31 -- 75@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 41 -- 47@LB@ |
52 |
0.001789 |
0.121 |
b1799 |
dmlR |
-11.56 |
0.127346 |
72 -- 108 |
34 -- 68 |
transcriptional activator of dmlA |
b3060 |
_____________71_______________________________________109\n_____________|________________________________________|\n5'-CGC...GGGAU_________ACGCA_______________UU_____C___CUUCC...CGG-3'\n______________CGCAGCAAU_____UCGU__UUUCA_UCA__GGGUU_UCA\n______________|:|||||||_____||||__|||||_|||__||:||_:||\n______________GUGUCGUUA_____AGCA__AAAGU_AGU__CCUAA_GGU\n3'-UUU...GAUGU__________________AC_____G___CC_____A___ACGAA...GCA-5'\n_____________|________________________________________|\n_____________69_______________________________________33\n |
74 -- 80 |
60 -- 66 |
-24.8584 kcal/mol |
8.52016 kcal/mol |
4.78423 kcal/mol |
71 109@LB@ | |@LB@5'-CGC...GGGAU ACGCA UU C CUUCC...CGG-3'@LB@ CGCAGCAAU UCGU UUUCA UCA GGGUU UCA@LB@ |:||||||| |||| ||||| ||| ||:|| :||@LB@ GUGUCGUUA AGCA AAAGU AGU CCUAA GGU@LB@3'-UUU...GAUGU AC G CC A ACGAA...GCA-5'@LB@ | |@LB@ 69 33@LB@@LB@@LB@Energy -11.56 kcal/mol@LB@Hybridization Energy -24.8584 kcal/mol@LB@Unfolding Energy - mRNA 8.52016 kcal/mol@LB@Unfolding Energy - sRNA 4.78423 kcal/mol@LB@@LB@Position - mRNA 72 -- 108@LB@Position - sRNA 34 -- 68@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 60 -- 66@LB@ |
53 |
0.001859 |
0.1218 |
b0529 |
folD |
-11.41 |
0.136116 |
200 -- 226 |
61 -- 85 |
bifunctional 5 10-methylene-tetrahydrofolate dehydrogenase/ 5 10-methylene-tetrahydrofolate cyclohydrolase |
|
_____________199_________________________227\n_____________|___________________________|\n5'-CAA...UCUCU_____CA___________UG_______AACGA...CAC-3'\n______________GAUGG__GCAAAGAUUAU__ACGGUAA\n______________|||||__|||||||:||:__||:|:||\n______________CUACC__CGUUUCUGAUG__UGUCGUU\n3'-UUU...ACCCU__________________UG_______AAGCA...GCA-5'\n_____________|___________________________|\n_____________86__________________________60\n |
220 -- 226 |
61 -- 67 |
-27.4215 kcal/mol |
5.77154 kcal/mol |
10.2439 kcal/mol |
199 227@LB@ | |@LB@5'-CAA...UCUCU CA UG AACGA...CAC-3'@LB@ GAUGG GCAAAGAUUAU ACGGUAA@LB@ ||||| |||||||:||: ||:|:||@LB@ CUACC CGUUUCUGAUG UGUCGUU@LB@3'-UUU...ACCCU UG AAGCA...GCA-5'@LB@ | |@LB@ 86 60@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -27.4215 kcal/mol@LB@Unfolding Energy - mRNA 5.77154 kcal/mol@LB@Unfolding Energy - sRNA 10.2439 kcal/mol@LB@@LB@Position - mRNA 200 -- 226@LB@Position - sRNA 61 -- 85@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 61 -- 67@LB@ |
54 |
0.00187 |
0.1218 |
b3607 |
cysE |
-14.87 |
0.022582 |
98 -- 129 |
42 -- 78 |
serine acetyltransferase |
|
_____________97_________________________________________130\n_____________|__________________________________________|\n5'-CGG...CACGC______GA__________C_____________AACCC_____AACCU...CGA-3'\n______________AAGGAC___GCGCAGCAG__________CACU_____CAGGG\n______________||:|||___:|:|||||:__________||||_____|||||\n______________UUUCUG___UGUGUCGUU__________GUGA_____GUCCC\n3'-UUU...ACCCG______AUG_________AAGCAACAAA______________CUAAA...GCA-5'\n_____________|__________________________________________|\n_____________79_________________________________________41\n |
108 -- 114 |
61 -- 67 |
-27.0645 kcal/mol |
7.42824 kcal/mol |
4.76487 kcal/mol |
97 130@LB@ | |@LB@5'-CGG...CACGC GA C AACCC AACCU...CGA-3'@LB@ AAGGAC GCGCAGCAG CACU CAGGG@LB@ ||:||| :|:|||||: |||| |||||@LB@ UUUCUG UGUGUCGUU GUGA GUCCC@LB@3'-UUU...ACCCG AUG AAGCAACAAA CUAAA...GCA-5'@LB@ | |@LB@ 79 41@LB@@LB@@LB@Energy -14.87 kcal/mol@LB@Hybridization Energy -27.0645 kcal/mol@LB@Unfolding Energy - mRNA 7.42824 kcal/mol@LB@Unfolding Energy - sRNA 4.76487 kcal/mol@LB@@LB@Position - mRNA 98 -- 129@LB@Position - sRNA 42 -- 78@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 61 -- 67@LB@ |
55 |
0.001955 |
0.1223 |
b0840 |
deoR |
-10.34 |
0.214583 |
216 -- 260 |
60 -- 103 |
deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
|
_____________215____________________________________________261\n_____________|______________________________________________|\n5'-GUG...GUCGC_______G________C__C__CU_____A____AA__________AAGUU...UUU-3'\n______________GAAGAGC_UAUCG_GG_AG_UG__GCAAG_AUUA__ACGCAGCGAU\n______________:||:|||_:||||_||_||_||__||||:_|:||__||:||||:||\n______________UUUUUCG_GUAGC_CC_UC_AC__CGUUU_UGAU__UGUGUCGUUA\n_________3'-UU_______G_____A__C__U__C______C____G___________AGCAA...GCA-5'\n_____________|______________________________________________|\n_____________104____________________________________________59\n |
254 -- 260 |
60 -- 66 |
-39.4084 kcal/mol |
12.9673 kcal/mol |
16.1071 kcal/mol |
215 261@LB@ | |@LB@5'-GUG...GUCGC G C C CU A AA AAGUU...UUU-3'@LB@ GAAGAGC UAUCG GG AG UG GCAAG AUUA ACGCAGCGAU@LB@ :||:||| :|||| || || || ||||: |:|| ||:||||:||@LB@ UUUUUCG GUAGC CC UC AC CGUUU UGAU UGUGUCGUUA@LB@ 3'-UU G A C U C C G AGCAA...GCA-5'@LB@ | |@LB@ 104 59@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -39.4084 kcal/mol@LB@Unfolding Energy - mRNA 12.9673 kcal/mol@LB@Unfolding Energy - sRNA 16.1071 kcal/mol@LB@@LB@Position - mRNA 216 -- 260@LB@Position - sRNA 60 -- 103@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 60 -- 66@LB@ |
56 |
0.001982 |
0.1223 |
b2304 |
yfcH |
-16.49 |
0.008143 |
193 -- 225 |
40 -- 77 |
putative NAD-dependent nucleotide-sugar epimerase |
|
_____________192_________________________________________226\n_____________|___________________________________________|\n5'-AAA...AUCGG________AUGA__________________________A____CAGGA...ACC-3'\n______________GAGGCUGC____ACAUAGUGA_________UCAC_CGG_GGGA\n______________:||:||:|____|||:||::|_________||||_|:|_||||\n______________UUCUGAUG____UGUGUCGUU_________AGUG_GUC_CCCU\n3'-UUU...CCCGU_____________________AAGCAACAA____A________AAAGG...GCA-5'\n_____________|___________________________________________|\n_____________78__________________________________________39\n |
206 -- 212 |
62 -- 68 |
-29.217 kcal/mol |
7.9505 kcal/mol |
4.77871 kcal/mol |
192 226@LB@ | |@LB@5'-AAA...AUCGG AUGA A CAGGA...ACC-3'@LB@ GAGGCUGC ACAUAGUGA UCAC CGG GGGA@LB@ :||:||:| |||:||::| |||| |:| ||||@LB@ UUCUGAUG UGUGUCGUU AGUG GUC CCCU@LB@3'-UUU...CCCGU AAGCAACAA A AAAGG...GCA-5'@LB@ | |@LB@ 78 39@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -29.217 kcal/mol@LB@Unfolding Energy - mRNA 7.9505 kcal/mol@LB@Unfolding Energy - sRNA 4.77871 kcal/mol@LB@@LB@Position - mRNA 193 -- 225@LB@Position - sRNA 40 -- 77@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 62 -- 68@LB@ |
57 |
0.002011 |
0.1223 |
b3057 |
bacA |
-16.67 |
0.007222 |
149 -- 193 |
41 -- 71 |
undecaprenyl pyrophosphate phosphatase |
|
_____________148___________________________________________194\n_____________|_____________________________________________|\n5'-UUC...UGGUC_______________GACAAG_GGUACAUUUUAAUA_________UUUAU...UUG-3'\n______________AUACGCAGUAGUUCG______C______________AUUUAGGGG\n______________|:||:|||:|:||||______|______________|:|:|||||\n______________UGUGUGUCGUUAAGC______G______________UGAGUCCCC\n3'-UUU...UCUGA_______________AACAAA________________________UAAAG...GCA-5'\n_____________|_____________________________________________|\n_____________72____________________________________________40\n |
187 -- 193 |
41 -- 47 |
-30.087 kcal/mol |
8.67993 kcal/mol |
4.74226 kcal/mol |
148 194@LB@ | |@LB@5'-UUC...UGGUC GACAAG GGUACAUUUUAAUA UUUAU...UUG-3'@LB@ AUACGCAGUAGUUCG C AUUUAGGGG@LB@ |:||:|||:|:|||| | |:|:|||||@LB@ UGUGUGUCGUUAAGC G UGAGUCCCC@LB@3'-UUU...UCUGA AACAAA UAAAG...GCA-5'@LB@ | |@LB@ 72 40@LB@@LB@@LB@Energy -16.67 kcal/mol@LB@Hybridization Energy -30.087 kcal/mol@LB@Unfolding Energy - mRNA 8.67993 kcal/mol@LB@Unfolding Energy - sRNA 4.74226 kcal/mol@LB@@LB@Position - mRNA 149 -- 193@LB@Position - sRNA 41 -- 71@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 41 -- 47@LB@ |
58 |
0.002015 |
0.1223 |
b0189 |
rof |
-8.06 |
0.473679 |
29 -- 61 |
40 -- 71 |
modulator of Rho-dependent transcription termination |
|
_____________28_________________________________62\n_____________|__________________________________|\n5'-AGG...AGUUA_______A_____A__CG_AAA________C___GACUU...GCG-3'\n______________AUACGCA_GCGGU_CG__G___UCGC_CAG_GGA\n______________|:||:||_||::|_||__|___||:|_|||_|||\n______________UGUGUGU_CGUUA_GC__C___AGUG_GUC_CCU\n3'-UUU...UCUGA_____________A__AA_AA_____A___C___AAAGG...GCA-5'\n_____________|__________________________________|\n_____________72_________________________________39\n |
29 -- 35 |
65 -- 71 |
-25.5885 kcal/mol |
12.7864 kcal/mol |
4.74818 kcal/mol |
28 62@LB@ | |@LB@5'-AGG...AGUUA A A CG AAA C GACUU...GCG-3'@LB@ AUACGCA GCGGU CG G UCGC CAG GGA@LB@ |:||:|| ||::| || | ||:| ||| |||@LB@ UGUGUGU CGUUA GC C AGUG GUC CCU@LB@3'-UUU...UCUGA A AA AA A C AAAGG...GCA-5'@LB@ | |@LB@ 72 39@LB@@LB@@LB@Energy -8.06 kcal/mol@LB@Hybridization Energy -25.5885 kcal/mol@LB@Unfolding Energy - mRNA 12.7864 kcal/mol@LB@Unfolding Energy - sRNA 4.74818 kcal/mol@LB@@LB@Position - mRNA 29 -- 61@LB@Position - sRNA 40 -- 71@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 65 -- 71@LB@ |
59 |
0.002304 |
0.1363 |
b2508 |
guaB |
-11.36 |
0.139274 |
1 -- 26 |
38 -- 71 |
IMP dehydrogenase |
|
______________1__________________________________27\n______________|__________________________________|\n___________5'-__UA_______AA____________G_________GAGAA...AGC-3'\n______________AC__ACGGUAA___________AUU_CAGGGGAUU\n______________||__||:|:||___________|:|_|||||||||\n______________UG__UGUCGUU___________UGA_GUCCCCUAA\n3'-UUU...UCUGA__UG_______AAGCAACAAAG_____________AGGUA...GCA-5'\n_____________|___________________________________|\n_____________72__________________________________37\n |
20 -- 26 |
38 -- 44 |
-21.1303 kcal/mol |
5.02575 kcal/mol |
4.74986 kcal/mol |
1 27@LB@ | |@LB@ 5'- UA AA G GAGAA...AGC-3'@LB@ AC ACGGUAA AUU CAGGGGAUU@LB@ || ||:|:|| |:| |||||||||@LB@ UG UGUCGUU UGA GUCCCCUAA@LB@3'-UUU...UCUGA UG AAGCAACAAAG AGGUA...GCA-5'@LB@ | |@LB@ 72 37@LB@@LB@@LB@Energy -11.36 kcal/mol@LB@Hybridization Energy -21.1303 kcal/mol@LB@Unfolding Energy - mRNA 5.02575 kcal/mol@LB@Unfolding Energy - sRNA 4.74986 kcal/mol@LB@@LB@Position - mRNA 1 -- 26@LB@Position - sRNA 38 -- 71@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 38 -- 44@LB@ |
60 |
0.002324 |
0.1363 |
b0881 |
clpS |
-11.74 |
0.117068 |
9 -- 15 |
40 -- 46 |
regulatory protein for ClpA substrate specificity |
|
_____________8_______16\n_____________|_______|\n___5'-GCAUUUGA_______CAAGG...UCA-3'\n______________CAGGGGA\n______________|||||||\n______________GUCCCCU\n3'-UUU...AGUGA_______AAAGG...GCA-5'\n_____________|_______|\n_____________47______39\n |
9 -- 15 |
40 -- 46 |
-13.2936 kcal/mol |
0.199257 kcal/mol |
1.35582 kcal/mol |
8 16@LB@ | |@LB@ 5'-GCAUUUGA CAAGG...UCA-3'@LB@ CAGGGGA@LB@ |||||||@LB@ GUCCCCU@LB@3'-UUU...AGUGA AAAGG...GCA-5'@LB@ | |@LB@ 47 39@LB@@LB@@LB@Energy -11.74 kcal/mol@LB@Hybridization Energy -13.2936 kcal/mol@LB@Unfolding Energy - mRNA 0.199257 kcal/mol@LB@Unfolding Energy - sRNA 1.35582 kcal/mol@LB@@LB@Position - mRNA 9 -- 15@LB@Position - sRNA 40 -- 46@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 40 -- 46@LB@ |