161 |
0.00773 |
0.1668 |
b0945 |
pyrD |
-11.84 |
0.111523 |
258 -- 300 |
33 -- 77 |
dihydro-orotate oxidase FMN-linked |
|
_____________257____________________________________________300\n_____________|______________________________________________|\n5'-UGU...CUCAU___U____UUUU________A__CC__A____A_______ACG____-3'\n______________GAG_UUAC____CAGCAAUU_CG__GU_UUAC_____GGA___CCGU\n______________:||_:|||____||||||||_||__||_|:||_____|||___||:|\n______________UUC_GAUG____GUCGUUAA_GC__CA_AGUG_____CCU___GGUA\n3'-UUU...CCCGU___U____UGU____________AA__A____AGUCC___AAA____CGAAU...GCA-5'\n_____________|_______________________________________________|\n_____________78______________________________________________32\n |
271 -- 277 |
59 -- 65 |
-22.2972 kcal/mol |
5.63827 kcal/mol |
4.81602 kcal/mol |
257 300@LB@ | |@LB@5'-UGU...CUCAU U UUUU A CC A A ACG -3'@LB@ GAG UUAC CAGCAAUU CG GU UUAC GGA CCGU@LB@ :|| :||| |||||||| || || |:|| ||| ||:|@LB@ UUC GAUG GUCGUUAA GC CA AGUG CCU GGUA@LB@3'-UUU...CCCGU U UGU AA A AGUCC AAA CGAAU...GCA-5'@LB@ | |@LB@ 78 32@LB@@LB@@LB@Energy -11.84 kcal/mol@LB@Hybridization Energy -22.2972 kcal/mol@LB@Unfolding Energy - mRNA 5.63827 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 258 -- 300@LB@Position - sRNA 33 -- 77@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 59 -- 65@LB@ |
162 |
0.007731 |
0.1668 |
b4202 |
rpsR |
-9.58 |
0.287294 |
60 -- 77 |
62 -- 76 |
30S ribosomal subunit protein S18 |
|
_____________59_________________78\n_____________|__________________|\n5'-CGG...AAACC____CAU___U_______UAACG...UCA-3'\n______________AGGC___UAC_CACAGUA\n______________||:|___|||_|||||:|\n______________UCUG___AUG_GUGUCGU\n3'-UUU...CCGUU__________U_______UAAGC...GCA-5'\n_____________|__________________|\n_____________77_________________61\n |
71 -- 77 |
62 -- 68 |
-14.2281 kcal/mol |
1.39912 kcal/mol |
3.25371 kcal/mol |
59 78@LB@ | |@LB@5'-CGG...AAACC CAU U UAACG...UCA-3'@LB@ AGGC UAC CACAGUA@LB@ ||:| ||| |||||:|@LB@ UCUG AUG GUGUCGU@LB@3'-UUU...CCGUU U UAAGC...GCA-5'@LB@ | |@LB@ 77 61@LB@@LB@@LB@Energy -9.58 kcal/mol@LB@Hybridization Energy -14.2281 kcal/mol@LB@Unfolding Energy - mRNA 1.39912 kcal/mol@LB@Unfolding Energy - sRNA 3.25371 kcal/mol@LB@@LB@Position - mRNA 60 -- 77@LB@Position - sRNA 62 -- 76@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 62 -- 68@LB@ |
163 |
0.007762 |
0.1668 |
b0394 |
mak |
-14.23 |
0.032787 |
242 -- 265 |
40 -- 75 |
manno(fructo)kinase |
|
_____________241__________________________________266\n_____________|____________________________________|\n5'-GUU...GAAGU________UG______G___________________GCAGU...GUG-3'\n______________GAUUGCAC__GGCGAU_____________CAGGGGA\n______________||:|:|||__:||:||_____________|||||||\n______________CUGAUGUG__UCGUUA_____________GUCCCCU\n3'-UUU...CGUUU________UG______AGCAACAAAGUGA_______AAAGG...GCA-5'\n_____________|____________________________________|\n_____________76___________________________________39\n |
259 -- 265 |
40 -- 46 |
-27.5886 kcal/mol |
8.58508 kcal/mol |
4.77786 kcal/mol |
241 266@LB@ | |@LB@5'-GUU...GAAGU UG G GCAGU...GUG-3'@LB@ GAUUGCAC GGCGAU CAGGGGA@LB@ ||:|:||| :||:|| |||||||@LB@ CUGAUGUG UCGUUA GUCCCCU@LB@3'-UUU...CGUUU UG AGCAACAAAGUGA AAAGG...GCA-5'@LB@ | |@LB@ 76 39@LB@@LB@@LB@Energy -14.23 kcal/mol@LB@Hybridization Energy -27.5886 kcal/mol@LB@Unfolding Energy - mRNA 8.58508 kcal/mol@LB@Unfolding Energy - sRNA 4.77786 kcal/mol@LB@@LB@Position - mRNA 242 -- 265@LB@Position - sRNA 40 -- 75@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 40 -- 46@LB@ |
164 |
0.007775 |
0.1668 |
b2097 |
fbaB |
-9.67 |
0.277966 |
247 -- 265 |
48 -- 68 |
fructose-bisphosphate aldolase class I |
|
_____________246___________________266\n_____________|_____________________|\n5'-AAU...CCUUU_______C________A_G__AAUUC...AUG-3'\n______________UACAGCA___CGUUGU_U_AC\n______________:||||||___||||||_|_||\n______________GUGUCGU___GCAACA_A_UG\n3'-UUU...GAUGU_______UAA______A_G__AGUCC...GCA-5'\n_____________|_____________________|\n_____________69____________________47\n |
247 -- 253 |
62 -- 68 |
-18.0796 kcal/mol |
4.78239 kcal/mol |
3.63277 kcal/mol |
246 266@LB@ | |@LB@5'-AAU...CCUUU C A G AAUUC...AUG-3'@LB@ UACAGCA CGUUGU U AC@LB@ :|||||| |||||| | ||@LB@ GUGUCGU GCAACA A UG@LB@3'-UUU...GAUGU UAA A G AGUCC...GCA-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -18.0796 kcal/mol@LB@Unfolding Energy - mRNA 4.78239 kcal/mol@LB@Unfolding Energy - sRNA 3.63277 kcal/mol@LB@@LB@Position - mRNA 247 -- 265@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 62 -- 68@LB@ |
165 |
0.007934 |
0.1692 |
b3355 |
prkB |
-7.13 |
0.603515 |
287 -- 294 |
63 -- 70 |
putative phosphoribulokinase |
|
_____________286______295\n_____________|________|\n5'-GGC...AUAUU________UAAAUC-3'\n______________CGCGCAGU\n______________|:|:|||:\n______________GUGUGUCG\n3'-UUU...CUGAU________UUAAG...GCA-5'\n_____________|________|\n_____________71_______62\n |
288 -- 294 |
63 -- 69 |
-11.0055 kcal/mol |
0.741841 kcal/mol |
3.13161 kcal/mol |
286 295@LB@ | |@LB@5'-GGC...AUAUU UAAAUC-3'@LB@ CGCGCAGU@LB@ |:|:|||:@LB@ GUGUGUCG@LB@3'-UUU...CUGAU UUAAG...GCA-5'@LB@ | |@LB@ 71 62@LB@@LB@@LB@Energy -7.13 kcal/mol@LB@Hybridization Energy -11.0055 kcal/mol@LB@Unfolding Energy - mRNA 0.741841 kcal/mol@LB@Unfolding Energy - sRNA 3.13161 kcal/mol@LB@@LB@Position - mRNA 287 -- 294@LB@Position - sRNA 63 -- 70@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 63 -- 69@LB@ |
166 |
0.008074 |
0.1711 |
b2158 |
yeiH |
-9.26 |
0.321503 |
233 -- 257 |
41 -- 72 |
UPF0324 family inner membrane protein |
|
_____________232_______________________________258\n_____________|_________________________________|\n5'-CAC...CAUCG_____UG_____________________C____UUAGC...GUG-3'\n______________UACAC__UGGCA________UUUUAUUC_GGGG\n______________|||||__::|||________|||:|:||_||||\n______________AUGUG__GUCGU________AAAGUGAG_CCCC\n3'-UUU...UUCUG_____U______UAAGCAAC________U____UAAAG...GCA-5'\n_____________|_________________________________|\n_____________73________________________________40\n |
246 -- 252 |
46 -- 52 |
-21.8619 kcal/mol |
7.84401 kcal/mol |
4.75632 kcal/mol |
232 258@LB@ | |@LB@5'-CAC...CAUCG UG C UUAGC...GUG-3'@LB@ UACAC UGGCA UUUUAUUC GGGG@LB@ ||||| ::||| |||:|:|| ||||@LB@ AUGUG GUCGU AAAGUGAG CCCC@LB@3'-UUU...UUCUG U UAAGCAAC U UAAAG...GCA-5'@LB@ | |@LB@ 73 40@LB@@LB@@LB@Energy -9.26 kcal/mol@LB@Hybridization Energy -21.8619 kcal/mol@LB@Unfolding Energy - mRNA 7.84401 kcal/mol@LB@Unfolding Energy - sRNA 4.75632 kcal/mol@LB@@LB@Position - mRNA 233 -- 257@LB@Position - sRNA 41 -- 72@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 46 -- 52@LB@ |
167 |
0.008121 |
0.1711 |
b2603 |
yfiR |
-9.52 |
0.293133 |
262 -- 278 |
35 -- 51 |
putative periplasmic inhibitor of YfiN activity |
|
_____________261_______________279\n_____________|_________________|\n5'-GUA...AAUAC_________A_CC____GACGU...GUA-3'\n______________UCGCUCAGG_G__UUCU\n______________||:||||||_|__|||:\n______________AGUGAGUCC_C__AAGG\n3'-UUU...AACAA_________C_UA____UACGA...GCA-5'\n_____________|_________________|\n_____________52________________34\n |
264 -- 270 |
43 -- 49 |
-18.1931 kcal/mol |
6.80204 kcal/mol |
1.87111 kcal/mol |
261 279@LB@ | |@LB@5'-GUA...AAUAC A CC GACGU...GUA-3'@LB@ UCGCUCAGG G UUCU@LB@ ||:|||||| | |||:@LB@ AGUGAGUCC C AAGG@LB@3'-UUU...AACAA C UA UACGA...GCA-5'@LB@ | |@LB@ 52 34@LB@@LB@@LB@Energy -9.52 kcal/mol@LB@Hybridization Energy -18.1931 kcal/mol@LB@Unfolding Energy - mRNA 6.80204 kcal/mol@LB@Unfolding Energy - sRNA 1.87111 kcal/mol@LB@@LB@Position - mRNA 262 -- 278@LB@Position - sRNA 35 -- 51@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 43 -- 49@LB@ |
168 |
0.008282 |
0.1723 |
b3822 |
recQ |
-12.50 |
0.081546 |
124 -- 155 |
43 -- 77 |
ATP-dependent DNA helicase |
|
_____________123___________________________________156\n_____________|_____________________________________|\n5'-CGC...UCUCA_______AAA____U_______C_________G____CGCUG...UUA-3'\n______________GAGACUA___GCAU_GCAGUUU______UCGC_CAGG\n______________:||||||___:||:_|||:||:______||:|_||||\n______________UUCUGAU___UGUG_CGUUAAG______AGUG_GUCC\n3'-UUU...CCCGU_______G______U_______CAACAA____A____CCUAA...GCA-5'\n_____________|_____________________________________|\n_____________78____________________________________42\n |
139 -- 145 |
58 -- 64 |
-25.7534 kcal/mol |
8.90299 kcal/mol |
4.3531 kcal/mol |
123 156@LB@ | |@LB@5'-CGC...UCUCA AAA U C G CGCUG...UUA-3'@LB@ GAGACUA GCAU GCAGUUU UCGC CAGG@LB@ :|||||| :||: |||:||: ||:| ||||@LB@ UUCUGAU UGUG CGUUAAG AGUG GUCC@LB@3'-UUU...CCCGU G U CAACAA A CCUAA...GCA-5'@LB@ | |@LB@ 78 42@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -25.7534 kcal/mol@LB@Unfolding Energy - mRNA 8.90299 kcal/mol@LB@Unfolding Energy - sRNA 4.3531 kcal/mol@LB@@LB@Position - mRNA 124 -- 155@LB@Position - sRNA 43 -- 77@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 58 -- 64@LB@ |
169 |
0.008352 |
0.1723 |
b1222 |
narX |
-15.18 |
0.018797 |
58 -- 74 |
61 -- 75 |
sensory histidine kinase in two-component regulatory system with NarL |
|
_____________57________________75\n_____________|_________________|\n5'-AAA...AAAGC_____AC__________AUAAG...CUG-3'\n______________GACUA__CACACGGCAA\n______________|||||__|||||:||||\n______________CUGAU__GUGUGUCGUU\n3'-UUU...CGUUU_________________AAGCA...GCA-5'\n_____________|_________________|\n_____________76________________60\n |
68 -- 74 |
61 -- 67 |
-20.5903 kcal/mol |
2.1582 kcal/mol |
3.25399 kcal/mol |
57 75@LB@ | |@LB@5'-AAA...AAAGC AC AUAAG...CUG-3'@LB@ GACUA CACACGGCAA@LB@ ||||| |||||:||||@LB@ CUGAU GUGUGUCGUU@LB@3'-UUU...CGUUU AAGCA...GCA-5'@LB@ | |@LB@ 76 60@LB@@LB@@LB@Energy -15.18 kcal/mol@LB@Hybridization Energy -20.5903 kcal/mol@LB@Unfolding Energy - mRNA 2.1582 kcal/mol@LB@Unfolding Energy - sRNA 3.25399 kcal/mol@LB@@LB@Position - mRNA 58 -- 74@LB@Position - sRNA 61 -- 75@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 61 -- 67@LB@ |
170 |
0.008354 |
0.1723 |
b3294 |
rplQ |
-12.86 |
0.068031 |
178 -- 204 |
31 -- 54 |
50S ribosomal subunit protein L17 |
|
_____________177_________________________205\n_____________|___________________________|\n5'-UAU...UUAAG________G__AA____AAGG______GCCAU...UCA-3'\n______________GUUUUACU_AG__GGAU____UCAUGC\n______________||||:|||_||__||||____:|||||\n______________CAAAGUGA_UC__CCUA____GGUACG\n3'-UUU...AGCAA________G__C_____AA________AAUAU...GCA-5'\n_____________|___________________________|\n_____________55__________________________30\n |
179 -- 185 |
47 -- 53 |
-21.6424 kcal/mol |
4.376 kcal/mol |
4.40484 kcal/mol |
177 205@LB@ | |@LB@5'-UAU...UUAAG G AA AAGG GCCAU...UCA-3'@LB@ GUUUUACU AG GGAU UCAUGC@LB@ ||||:||| || |||| :|||||@LB@ CAAAGUGA UC CCUA GGUACG@LB@3'-UUU...AGCAA G C AA AAUAU...GCA-5'@LB@ | |@LB@ 55 30@LB@@LB@@LB@Energy -12.86 kcal/mol@LB@Hybridization Energy -21.6424 kcal/mol@LB@Unfolding Energy - mRNA 4.376 kcal/mol@LB@Unfolding Energy - sRNA 4.40484 kcal/mol@LB@@LB@Position - mRNA 178 -- 204@LB@Position - sRNA 31 -- 54@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 47 -- 53@LB@ |