Freiburg RNA Tools
CopraRNA - Results
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IFF
CopraRNA 4187984

Input and runtime details for job 4187984 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 4187984 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:34:57 CET 2014
?Processing Started@ Mon Oct 27 20:09:51 CET 2014
?CopraRNA Finished & Post-Processing@ Mon Oct 27 22:16:26 CET 2014
?Post-Processing Finished@ Mon Oct 27 22:16:26 CET 2014
?Job Completed@ Mon Oct 27 22:16:37 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=4187984&toolName=CopraRNA ( 30 days expiry )

The job description you specified

FsrA

Output download complete results [zip]

Downloadable files

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heatmap

? Conserved, identified interactions for NC_000964 Bacillus subtilis subsp. subtilis str. 168

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 2.295e-07 0.0008564 bsu14890 ctaC -17.57 0.007958 187 -- 200 22 -- 34 cytochrome c oxidase subunit 2   0
2 5.86e-07 0.001094 bsu10760 yisL -18.48 0.004980 172 -- 193 31 -- 51 Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component   0
3 5.779e-06 0.006427 bsu18000 citB -21.44 0.000916 173 -- 202 21 -- 50 aconitate hydratase   0
4 6.888e-06 0.006427 bsu32200 yutJ -20.07 0.002081 210 -- 239 21 -- 53 NADH dehydrogenase-like protein YutJ   0
5 6.932e-05 0.05174 bsu04690 rsbT -15.27 0.023618 161 -- 193 22 -- 51 serine/threonine protein kinase   0
6 0.000185 0.09705 bsu08690 ygaD -17.91 0.006700 198 -- 233 24 -- 49 ABC transporter ATP-binding protein   0
7 0.0001993 0.09705 bsu15610 sumT -12.82 0.066164 189 -- 208 22 -- 33 uroporphyrinogen-iii C-methyltransferase   0
8 0.000208 0.09705 bsu12160 yjgC -18.96 0.003859 190 -- 206 10 -- 27 oxidoreductase bsu27220 bsu03310 0
9 0.0002955 0.1149 bsu00830 ctsR -17.46 0.008400 189 -- 207 21 -- 36 transcriptional regulator CtsR   0
10 0.0003079 0.1149 bsu29920 ytmP -15.17 0.024761 2 -- 31 25 -- 52 phosphotransferase YtmP   0

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.0.1