| 81 |
0.005945 |
0.2448 |
bsu06390 |
yebD |
-16.11 |
0.017881 |
267 -- 291 |
30 -- 53 |
Evidence 5: No homology to any previously reported sequences |
|
_____________266_______________________292\n_____________|_________________________|\n5'-UUU...UGCUC_____A___U___AA__A_______AACAG...UUG-3'\n______________UCGGA_UUU_AUC__GG_AGAGGGG\n______________|||||_:||_|||__|:_|||||||\n______________AGCCU_GAA_UAG__CU_UCUCCCC\n3'-UUU...AAAAA_____A___C___A___A_______AACCC...AUA-5'\n_____________|_________________________|\n_____________54________________________29\n |
285 -- 291 |
30 -- 36 |
-22.0812 kcal/mol |
4.98677 kcal/mol |
0.985344 kcal/mol |
266 292@LB@ | |@LB@5'-UUU...UGCUC A U AA A AACAG...UUG-3'@LB@ UCGGA UUU AUC GG AGAGGGG@LB@ ||||| :|| ||| |: |||||||@LB@ AGCCU GAA UAG CU UCUCCCC@LB@3'-UUU...AAAAA A C A A AACCC...AUA-5'@LB@ | |@LB@ 54 29@LB@@LB@@LB@Energy -16.11 kcal/mol@LB@Hybridization Energy -22.0812 kcal/mol@LB@Unfolding Energy - mRNA 4.98677 kcal/mol@LB@Unfolding Energy - sRNA 0.985344 kcal/mol@LB@@LB@Position - mRNA 267 -- 291@LB@Position - sRNA 30 -- 53@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 82 |
0.006245 |
0.254 |
bsu12400 |
yjnA |
-14.90 |
0.031572 |
235 -- 273 |
19 -- 53 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________234_____________________________________274\n_____________|_______________________________________|\n5'-UUA...GUUUG_____GC___A___G___U__C___A__G__U_______CCUUA...UGC-3'\n______________UCGGA__CUU_GUC_GAU_GA_GGG_GU_GG_GGAGCGG\n______________|||||__|||_:||_|||_||_|||_||_||_|||:|:|\n______________AGCCU__GAA_UAG_CUA_CU_CCC_CA_CC_CCUUGUC\n3'-UUU...AAAAA_____A____C___A___U_________A__________UCUCA...AUA-5'\n_____________|_______________________________________|\n_____________54______________________________________18\n |
267 -- 273 |
19 -- 25 |
-33.8463 kcal/mol |
12.0212 kcal/mol |
6.92635 kcal/mol |
234 274@LB@ | |@LB@5'-UUA...GUUUG GC A G U C A G U CCUUA...UGC-3'@LB@ UCGGA CUU GUC GAU GA GGG GU GG GGAGCGG@LB@ ||||| ||| :|| ||| || ||| || || |||:|:|@LB@ AGCCU GAA UAG CUA CU CCC CA CC CCUUGUC@LB@3'-UUU...AAAAA A C A U A UCUCA...AUA-5'@LB@ | |@LB@ 54 18@LB@@LB@@LB@Energy -14.90 kcal/mol@LB@Hybridization Energy -33.8463 kcal/mol@LB@Unfolding Energy - mRNA 12.0212 kcal/mol@LB@Unfolding Energy - sRNA 6.92635 kcal/mol@LB@@LB@Position - mRNA 235 -- 273@LB@Position - sRNA 19 -- 53@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 83 |
0.006595 |
0.2588 |
bsu17210 |
pksN |
-11.93 |
0.108023 |
61 -- 115 |
29 -- 70 |
polyketide synthase PksN |
|
_____________60_______________________________________________________116\n_____________|________________________________________________________|\n5'-AGC...CAAGA____________GAAA__________AA__G_G__CAAAACAUC____A____A__AAAUC...UAU-3'\n______________GGUGGCGCUAGG_____UUGGAUUUU__GA_U_UG_________AUAG_AGGG_GU\n______________|||:||||:|:|_____|:||||:||__||_|_||_________||||_||||_||\n______________CCAUCGCGGUUC_____AGCCUAGAA__CU_A_AC_________UAUC_UCCC_CA\n3'-UUU...CGCCC____________AAAAA_______________G_______________________ACCCC...AUA-5'\n_____________|________________________________________________________|\n_____________71_______________________________________________________28\n |
79 -- 85 |
45 -- 51 |
-37.7722 kcal/mol |
10.06 kcal/mol |
15.7778 kcal/mol |
60 116@LB@ | |@LB@5'-AGC...CAAGA GAAA AA G G CAAAACAUC A A AAAUC...UAU-3'@LB@ GGUGGCGCUAGG UUGGAUUUU GA U UG AUAG AGGG GU@LB@ |||:||||:|:| |:||||:|| || | || |||| |||| ||@LB@ CCAUCGCGGUUC AGCCUAGAA CU A AC UAUC UCCC CA@LB@3'-UUU...CGCCC AAAAA G ACCCC...AUA-5'@LB@ | |@LB@ 71 28@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -37.7722 kcal/mol@LB@Unfolding Energy - mRNA 10.06 kcal/mol@LB@Unfolding Energy - sRNA 15.7778 kcal/mol@LB@@LB@Position - mRNA 61 -- 115@LB@Position - sRNA 29 -- 70@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 84 |
0.006671 |
0.2588 |
bsu14270 |
moeB |
-18.74 |
0.004465 |
187 -- 207 |
32 -- 51 |
molybdopterin-synthase adenylyltransferase |
|
_____________186___________________208\n_____________|_____________________|\n5'-UUG...GAUAA___GAACA_____________AACGU...GAG-3'\n______________GGA_____GGUUUGAUGGAGG\n______________|||_____|:|:||||:||||\n______________CCU_____CUAGACUAUCUCC\n3'-UUU...AAAAG___AGAA______________CCAAC...AUA-5'\n_____________|_____________________|\n_____________52____________________31\n |
201 -- 207 |
32 -- 38 |
-23.059 kcal/mol |
3.35069 kcal/mol |
0.97021 kcal/mol |
186 208@LB@ | |@LB@5'-UUG...GAUAA GAACA AACGU...GAG-3'@LB@ GGA GGUUUGAUGGAGG@LB@ ||| |:|:||||:||||@LB@ CCU CUAGACUAUCUCC@LB@3'-UUU...AAAAG AGAA CCAAC...AUA-5'@LB@ | |@LB@ 52 31@LB@@LB@@LB@Energy -18.74 kcal/mol@LB@Hybridization Energy -23.059 kcal/mol@LB@Unfolding Energy - mRNA 3.35069 kcal/mol@LB@Unfolding Energy - sRNA 0.97021 kcal/mol@LB@@LB@Position - mRNA 187 -- 207@LB@Position - sRNA 32 -- 51@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 85 |
0.006705 |
0.2588 |
bsu28790 |
araB |
-13.91 |
0.048694 |
184 -- 192 |
30 -- 38 |
ribulokinase |
|
_____________183_______193\n_____________|_________|\n5'-GGA...CAAAA_________GAUGU...AAU-3'\n______________GUAGAGGGG\n______________:||||||||\n______________UAUCUCCCC\n3'-UUU...UAGAC_________AACCC...AUA-5'\n_____________|_________|\n_____________39________29\n |
186 -- 192 |
30 -- 36 |
-16.4519 kcal/mol |
1.87822 kcal/mol |
0.6591 kcal/mol |
183 193@LB@ | |@LB@5'-GGA...CAAAA GAUGU...AAU-3'@LB@ GUAGAGGGG@LB@ :||||||||@LB@ UAUCUCCCC@LB@3'-UUU...UAGAC AACCC...AUA-5'@LB@ | |@LB@ 39 29@LB@@LB@@LB@Energy -13.91 kcal/mol@LB@Hybridization Energy -16.4519 kcal/mol@LB@Unfolding Energy - mRNA 1.87822 kcal/mol@LB@Unfolding Energy - sRNA 0.6591 kcal/mol@LB@@LB@Position - mRNA 184 -- 192@LB@Position - sRNA 30 -- 38@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 86 |
0.006791 |
0.2588 |
bsu17010 |
ymcB |
-10.99 |
0.152529 |
169 -- 190 |
33 -- 52 |
(dimethylallyl)adenosine tRNA methylthiotransferase MiaB |
|
_____________168____________________191\n_____________|______________________|\n5'-AUC...AAGGG____AG__________AA____AAAAU...CGC-3'\n______________UGGA__UUUGGUUUGA__GGAG\n______________:|||__:|||:|:|||__:|||\n______________GCCU__GAACUAGACU__UCUC\n3'-UUU...AAAAA____A___________A_____CCCAA...AUA-5'\n_____________|______________________|\n_____________53_____________________32\n |
178 -- 184 |
38 -- 44 |
-16.81 kcal/mol |
4.84464 kcal/mol |
0.976367 kcal/mol |
168 191@LB@ | |@LB@5'-AUC...AAGGG AG AA AAAAU...CGC-3'@LB@ UGGA UUUGGUUUGA GGAG@LB@ :||| :|||:|:||| :|||@LB@ GCCU GAACUAGACU UCUC@LB@3'-UUU...AAAAA A A CCCAA...AUA-5'@LB@ | |@LB@ 53 32@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -16.81 kcal/mol@LB@Unfolding Energy - mRNA 4.84464 kcal/mol@LB@Unfolding Energy - sRNA 0.976367 kcal/mol@LB@@LB@Position - mRNA 169 -- 190@LB@Position - sRNA 33 -- 52@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 87 |
0.00681 |
0.2588 |
bsu29140 |
citZ |
-14.51 |
0.037644 |
213 -- 231 |
27 -- 52 |
citrate synthase 2 |
|
_____________212_________________________232\n_____________|___________________________|\n5'-GAG...CGACA__C________________________UAGCA...AUG-3'\n______________CG_GGUCUUGA________AGGGGUUG\n______________||_|:||||||________||||||||\n______________GC_CUAGAACU________UCCCCAAC\n3'-UUU...AAAAA___________AGACUAUC________CCCUU...AUA-5'\n_____________|___________________________|\n_____________53__________________________26\n |
225 -- 231 |
27 -- 33 |
-23.9033 kcal/mol |
8.41647 kcal/mol |
0.980744 kcal/mol |
212 232@LB@ | |@LB@5'-GAG...CGACA C UAGCA...AUG-3'@LB@ CG GGUCUUGA AGGGGUUG@LB@ || |:|||||| ||||||||@LB@ GC CUAGAACU UCCCCAAC@LB@3'-UUU...AAAAA AGACUAUC CCCUU...AUA-5'@LB@ | |@LB@ 53 26@LB@@LB@@LB@Energy -14.51 kcal/mol@LB@Hybridization Energy -23.9033 kcal/mol@LB@Unfolding Energy - mRNA 8.41647 kcal/mol@LB@Unfolding Energy - sRNA 0.980744 kcal/mol@LB@@LB@Position - mRNA 213 -- 231@LB@Position - sRNA 27 -- 52@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 88 |
0.006855 |
0.2588 |
bsu03770 |
rapC |
-14.27 |
0.041792 |
179 -- 211 |
12 -- 42 |
response regulator aspartate phosphatase C |
|
_____________178_______________________________212\n_____________|_________________________________|\n5'-UCA...CAGUU______G____A____GAA______A_______GGUAA...UAA-3'\n______________UUUGAU_GGAG_GGGU___GGAAUG_AGAGUGG\n______________|:||||_:|||_||||___||||::_|||||:|\n______________AGACUA_UCUC_CCCA___CCUUGU_UCUCAUC\n3'-UUU...GAACU________________ACC______C_______GAAGA...AUA-5'\n_____________|_________________________________|\n_____________43________________________________11\n |
205 -- 211 |
12 -- 18 |
-33.0113 kcal/mol |
8.84839 kcal/mol |
9.89449 kcal/mol |
178 212@LB@ | |@LB@5'-UCA...CAGUU G A GAA A GGUAA...UAA-3'@LB@ UUUGAU GGAG GGGU GGAAUG AGAGUGG@LB@ |:|||| :||| |||| ||||:: |||||:|@LB@ AGACUA UCUC CCCA CCUUGU UCUCAUC@LB@3'-UUU...GAACU ACC C GAAGA...AUA-5'@LB@ | |@LB@ 43 11@LB@@LB@@LB@Energy -14.27 kcal/mol@LB@Hybridization Energy -33.0113 kcal/mol@LB@Unfolding Energy - mRNA 8.84839 kcal/mol@LB@Unfolding Energy - sRNA 9.89449 kcal/mol@LB@@LB@Position - mRNA 179 -- 211@LB@Position - sRNA 12 -- 42@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 89 |
0.00694 |
0.2588 |
bsu06230 |
iolT |
-9.37 |
0.260314 |
174 -- 193 |
31 -- 49 |
major myo-inositol transporter IolT |
|
_____________173__________________194\n_____________|____________________|\n5'-AAA...UACGC_______AAAA__CU_____AAACA...AUG-3'\n______________AUUUUGA____GA__GGGGG\n______________||:||||____||__|:|||\n______________UAGAACU____CU__CUCCC\n3'-UUU...AAGCC_______AGA___AU_____CAACC...AUA-5'\n_____________|____________________|\n_____________50___________________30\n |
174 -- 180 |
43 -- 49 |
-14.1903 kcal/mol |
3.84886 kcal/mol |
0.970571 kcal/mol |
173 194@LB@ | |@LB@5'-AAA...UACGC AAAA CU AAACA...AUG-3'@LB@ AUUUUGA GA GGGGG@LB@ ||:|||| || |:|||@LB@ UAGAACU CU CUCCC@LB@3'-UUU...AAGCC AGA AU CAACC...AUA-5'@LB@ | |@LB@ 50 30@LB@@LB@@LB@Energy -9.37 kcal/mol@LB@Hybridization Energy -14.1903 kcal/mol@LB@Unfolding Energy - mRNA 3.84886 kcal/mol@LB@Unfolding Energy - sRNA 0.970571 kcal/mol@LB@@LB@Position - mRNA 174 -- 193@LB@Position - sRNA 31 -- 49@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 90 |
0.006982 |
0.2588 |
bsu40920 |
yyaF |
-12.87 |
0.074972 |
6 -- 31 |
25 -- 50 |
GTP-dependent nucleic acid-binding protein EngD |
|
_____________5___________________________32\n_____________|___________________________|\n______5'-CAAAU___ACAAAU_______AU__AA_____AAGUA...CGU-3'\n______________GAU______UCUGAUA__GG___UGGG\n______________|||______|||||||__||___||||\n______________CUA______AGACUAU__CC___ACCC\n3'-UUU...AAAGC___GAACU________CU__CCA____CUUGU...AUA-5'\n_____________|___________________________|\n_____________51__________________________24\n |
15 -- 21 |
36 -- 42 |
-17.5884 kcal/mol |
3.73957 kcal/mol |
0.976057 kcal/mol |
5 32@LB@ | |@LB@ 5'-CAAAU ACAAAU AU AA AAGUA...CGU-3'@LB@ GAU UCUGAUA GG UGGG@LB@ ||| ||||||| || ||||@LB@ CUA AGACUAU CC ACCC@LB@3'-UUU...AAAGC GAACU CU CCA CUUGU...AUA-5'@LB@ | |@LB@ 51 24@LB@@LB@@LB@Energy -12.87 kcal/mol@LB@Hybridization Energy -17.5884 kcal/mol@LB@Unfolding Energy - mRNA 3.73957 kcal/mol@LB@Unfolding Energy - sRNA 0.976057 kcal/mol@LB@@LB@Position - mRNA 6 -- 31@LB@Position - sRNA 25 -- 50@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 36 -- 42@LB@ |
