91 |
0.007102 |
0.2604 |
bsu36520 |
glnK |
-7.98 |
0.387566 |
247 -- 267 |
32 -- 49 |
nitrogen regulatory PII-like protein |
|
_____________246____________________268\n_____________|______________________|\n5'-GGU...GGCAA_______AAAG_______C___AACUC...CUU-3'\n______________AUUUUGA____CUGA_AG_AGG\n______________||:||||____||||_||_|||\n______________UAGAACU____GACU_UC_UCC\n3'-UUU...AAGCC_______A_______A______CCAAC...AUA-5'\n_____________|______________________|\n_____________50_____________________31\n |
247 -- 253 |
43 -- 49 |
-11.0905 kcal/mol |
2.14263 kcal/mol |
0.970192 kcal/mol |
246 268@LB@ | |@LB@5'-GGU...GGCAA AAAG C AACUC...CUU-3'@LB@ AUUUUGA CUGA AG AGG@LB@ ||:|||| |||| || |||@LB@ UAGAACU GACU UC UCC@LB@3'-UUU...AAGCC A A CCAAC...AUA-5'@LB@ | |@LB@ 50 31@LB@@LB@@LB@Energy -7.98 kcal/mol@LB@Hybridization Energy -11.0905 kcal/mol@LB@Unfolding Energy - mRNA 2.14263 kcal/mol@LB@Unfolding Energy - sRNA 0.970192 kcal/mol@LB@@LB@Position - mRNA 247 -- 267@LB@Position - sRNA 32 -- 49@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 43 -- 49@LB@ |
92 |
0.007313 |
0.2652 |
bsu34470 |
yveA |
-16.72 |
0.013215 |
240 -- 265 |
25 -- 47 |
aspartate-proton symporter |
|
_____________239________________________266\n_____________|__________________________|\n5'-CCU...CGCUG___________UUU__UU___A____AGCCA...UCA-3'\n______________UUUGAUCUGAU___GA__GGG_UGGG\n______________:||||||||||___||__|||_||||\n______________GAACUAGACUA___CU__CCC_ACCC\n3'-UUU...GCCUA___________U____C____A____CUUGU...AUA-5'\n_____________|__________________________|\n_____________48_________________________24\n |
244 -- 250 |
37 -- 43 |
-24.6158 kcal/mol |
6.92071 kcal/mol |
0.975871 kcal/mol |
239 266@LB@ | |@LB@5'-CCU...CGCUG UUU UU A AGCCA...UCA-3'@LB@ UUUGAUCUGAU GA GGG UGGG@LB@ :|||||||||| || ||| ||||@LB@ GAACUAGACUA CU CCC ACCC@LB@3'-UUU...GCCUA U C A CUUGU...AUA-5'@LB@ | |@LB@ 48 24@LB@@LB@@LB@Energy -16.72 kcal/mol@LB@Hybridization Energy -24.6158 kcal/mol@LB@Unfolding Energy - mRNA 6.92071 kcal/mol@LB@Unfolding Energy - sRNA 0.975871 kcal/mol@LB@@LB@Position - mRNA 240 -- 265@LB@Position - sRNA 25 -- 47@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 37 -- 43@LB@ |
93 |
0.007837 |
0.2778 |
bsu33430 |
yvgQ |
-5.79 |
0.632053 |
172 -- 180 |
38 -- 46 |
sulfite reductase [NADPH] hemoprotein beta-component |
|
_____________171_______181\n_____________|_________|\n5'-GCU...GUAUA_________CUUGA...UGA-3'\n______________UUGAUUUGA\n______________|||||:|||\n______________AACUAGACU\n3'-UUU...CCUAG_________AUCUC...AUA-5'\n_____________|_________|\n_____________47________37\n |
174 -- 180 |
38 -- 44 |
-9.05403 kcal/mol |
2.31378 kcal/mol |
0.946105 kcal/mol |
171 181@LB@ | |@LB@5'-GCU...GUAUA CUUGA...UGA-3'@LB@ UUGAUUUGA@LB@ |||||:|||@LB@ AACUAGACU@LB@3'-UUU...CCUAG AUCUC...AUA-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -5.79 kcal/mol@LB@Hybridization Energy -9.05403 kcal/mol@LB@Unfolding Energy - mRNA 2.31378 kcal/mol@LB@Unfolding Energy - sRNA 0.946105 kcal/mol@LB@@LB@Position - mRNA 172 -- 180@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 38 -- 44@LB@ |
94 |
0.007849 |
0.2778 |
bsu27000 |
yraB |
-9.14 |
0.279232 |
183 -- 193 |
29 -- 39 |
MerR family transcriptional regulator |
|
_____________182_________194\n_____________|___________|\n5'-AGU...UACAG_______A___GAAGA...ACA-3'\n______________GAUAGAG_GGU\n______________|||||||_|||\n______________CUAUCUC_CCA\n3'-UUU...CUAGA_______C___ACCCC...AUA-5'\n_____________|___________|\n_____________40__________28\n |
183 -- 189 |
33 -- 39 |
-13.977 kcal/mol |
4.05751 kcal/mol |
0.779471 kcal/mol |
182 194@LB@ | |@LB@5'-AGU...UACAG A GAAGA...ACA-3'@LB@ GAUAGAG GGU@LB@ ||||||| |||@LB@ CUAUCUC CCA@LB@3'-UUU...CUAGA C ACCCC...AUA-5'@LB@ | |@LB@ 40 28@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -13.977 kcal/mol@LB@Unfolding Energy - mRNA 4.05751 kcal/mol@LB@Unfolding Energy - sRNA 0.779471 kcal/mol@LB@@LB@Position - mRNA 183 -- 193@LB@Position - sRNA 29 -- 39@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 33 -- 39@LB@ |
95 |
0.007929 |
0.2778 |
bsu40080 |
gntZ |
-7.93 |
0.392252 |
74 -- 93 |
34 -- 54 |
6-phosphogluconate dehydrogenase |
|
_____________73____________________94\n_____________|_____________________|\n5'-ACU...AAUAC________AAGCA____A___AACAU...ACA-3'\n______________UUCGGAUU______UGA_AGA\n______________|||||||:______|||_|||\n______________AAGCCUAG______ACU_UCU\n3'-UUU...CAAAA________AACUAG___A___CCCCA...AUA-5'\n_____________|_____________________|\n_____________55____________________33\n |
75 -- 81 |
47 -- 53 |
-13.3211 kcal/mol |
3.78785 kcal/mol |
1.60142 kcal/mol |
73 94@LB@ | |@LB@5'-ACU...AAUAC AAGCA A AACAU...ACA-3'@LB@ UUCGGAUU UGA AGA@LB@ |||||||: ||| |||@LB@ AAGCCUAG ACU UCU@LB@3'-UUU...CAAAA AACUAG A CCCCA...AUA-5'@LB@ | |@LB@ 55 33@LB@@LB@@LB@Energy -7.93 kcal/mol@LB@Hybridization Energy -13.3211 kcal/mol@LB@Unfolding Energy - mRNA 3.78785 kcal/mol@LB@Unfolding Energy - sRNA 1.60142 kcal/mol@LB@@LB@Position - mRNA 74 -- 93@LB@Position - sRNA 34 -- 54@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 47 -- 53@LB@ |
96 |
0.00803 |
0.2778 |
bsu39710 |
iolF |
-10.11 |
0.206009 |
172 -- 191 |
30 -- 53 |
minor myo-inositol transporter IolF |
|
_____________171______________________192\n_____________|________________________|\n5'-GGC...AGUUG__________________AU____AAUGA...CCG-3'\n______________UUGGAUCU_GG_CU__UA__GGGG\n______________|:||||||_|:_||__||__||||\n______________AGCCUAGA_CU_GA__AU__CCCC\n3'-UUU...AAAAA________A__A__CU__CU____AACCC...AUA-5'\n_____________|________________________|\n_____________54_______________________29\n |
173 -- 179 |
46 -- 52 |
-17.6548 kcal/mol |
6.56277 kcal/mol |
0.985344 kcal/mol |
171 192@LB@ | |@LB@5'-GGC...AGUUG AU AAUGA...CCG-3'@LB@ UUGGAUCU GG CU UA GGGG@LB@ |:|||||| |: || || ||||@LB@ AGCCUAGA CU GA AU CCCC@LB@3'-UUU...AAAAA A A CU CU AACCC...AUA-5'@LB@ | |@LB@ 54 29@LB@@LB@@LB@Energy -10.11 kcal/mol@LB@Hybridization Energy -17.6548 kcal/mol@LB@Unfolding Energy - mRNA 6.56277 kcal/mol@LB@Unfolding Energy - sRNA 0.985344 kcal/mol@LB@@LB@Position - mRNA 172 -- 191@LB@Position - sRNA 30 -- 53@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 46 -- 52@LB@ |
97 |
0.008118 |
0.2778 |
bsu16450 |
cheC |
-9.97 |
0.215069 |
178 -- 195 |
28 -- 47 |
Chey-P phosphatase CheC |
|
_____________177__________________196\n_____________|____________________|\n5'-CGA...UCAAG___A________A_______AUGAC...UGU-3'\n______________CUU_AUCU__UA_AGGGGUU\n______________|||_||||__||_|||||||\n______________GAA_UAGA__AU_UCCCCAA\n3'-UUU...GCCUA___C____CU__C_______CCCCU...AUA-5'\n_____________|____________________|\n_____________48___________________27\n |
189 -- 195 |
28 -- 34 |
-14.5799 kcal/mol |
3.63028 kcal/mol |
0.974663 kcal/mol |
177 196@LB@ | |@LB@5'-CGA...UCAAG A A AUGAC...UGU-3'@LB@ CUU AUCU UA AGGGGUU@LB@ ||| |||| || |||||||@LB@ GAA UAGA AU UCCCCAA@LB@3'-UUU...GCCUA C CU C CCCCU...AUA-5'@LB@ | |@LB@ 48 27@LB@@LB@@LB@Energy -9.97 kcal/mol@LB@Hybridization Energy -14.5799 kcal/mol@LB@Unfolding Energy - mRNA 3.63028 kcal/mol@LB@Unfolding Energy - sRNA 0.974663 kcal/mol@LB@@LB@Position - mRNA 178 -- 195@LB@Position - sRNA 28 -- 47@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 28 -- 34@LB@ |
98 |
0.008247 |
0.2778 |
bsu19360 |
odhB |
-11.30 |
0.136272 |
146 -- 191 |
23 -- 51 |
dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex |
|
_____________145____________________________________________192\n_____________|______________________________________________|\n5'-AAG...GAACA___ACGUA___U_________CUU_ACUCGCAAAAACUAAG_____AAUGA...AAU-3'\n______________GGA_____UUG_AUCUGAUAG___G________________GGGGA\n______________|||_____|||_|||||||||___|________________|||||\n______________CCU_____AAC_UAGACUAUC___C________________CCCCU\n3'-UUU...AAAAG___AG________________UCC_CAA__________________UGUCU...AUA-5'\n_____________|______________________________________________|\n_____________52_____________________________________________22\n |
160 -- 166 |
35 -- 41 |
-19.511 kcal/mol |
7.22607 kcal/mol |
0.980049 kcal/mol |
145 192@LB@ | |@LB@5'-AAG...GAACA ACGUA U CUU ACUCGCAAAAACUAAG AAUGA...AAU-3'@LB@ GGA UUG AUCUGAUAG G GGGGA@LB@ ||| ||| ||||||||| | |||||@LB@ CCU AAC UAGACUAUC C CCCCU@LB@3'-UUU...AAAAG AG UCC CAA UGUCU...AUA-5'@LB@ | |@LB@ 52 22@LB@@LB@@LB@Energy -11.30 kcal/mol@LB@Hybridization Energy -19.511 kcal/mol@LB@Unfolding Energy - mRNA 7.22607 kcal/mol@LB@Unfolding Energy - sRNA 0.980049 kcal/mol@LB@@LB@Position - mRNA 146 -- 191@LB@Position - sRNA 23 -- 51@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 35 -- 41@LB@ |
99 |
0.00842 |
0.2778 |
bsu19470 |
yojF |
-13.80 |
0.051174 |
184 -- 193 |
30 -- 39 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________183________194\n_____________|__________|\n5'-GAA...AAGAA__A_______AGCAA...CAG-3'\n______________GA_AGAGGGG\n______________||_|||||||\n______________CU_UCUCCCC\n3'-UUU...CUAGA__A_______AACCC...AUA-5'\n_____________|__________|\n_____________40_________29\n |
187 -- 193 |
30 -- 36 |
-15.454 kcal/mol |
0.87683 kcal/mol |
0.779184 kcal/mol |
183 194@LB@ | |@LB@5'-GAA...AAGAA A AGCAA...CAG-3'@LB@ GA AGAGGGG@LB@ || |||||||@LB@ CU UCUCCCC@LB@3'-UUU...CUAGA A AACCC...AUA-5'@LB@ | |@LB@ 40 29@LB@@LB@@LB@Energy -13.80 kcal/mol@LB@Hybridization Energy -15.454 kcal/mol@LB@Unfolding Energy - mRNA 0.87683 kcal/mol@LB@Unfolding Energy - sRNA 0.779184 kcal/mol@LB@@LB@Position - mRNA 184 -- 193@LB@Position - sRNA 30 -- 39@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 30 -- 36@LB@ |
100 |
0.008436 |
0.2778 |
bsu35250 |
ftsX |
-12.75 |
0.078592 |
182 -- 188 |
30 -- 36 |
cell division protein FtsX |
|
_____________181_____189\n_____________|_______|\n5'-UGC...AGUCA_______AGUAU...CGC-3'\n______________AGAGGGG\n______________|||||||\n______________UCUCCCC\n3'-UUU...GACUA_______AACCC...AUA-5'\n_____________|_______|\n_____________37______29\n |
182 -- 188 |
30 -- 36 |
-13.7147 kcal/mol |
0.82624 kcal/mol |
0.133643 kcal/mol |
181 189@LB@ | |@LB@5'-UGC...AGUCA AGUAU...CGC-3'@LB@ AGAGGGG@LB@ |||||||@LB@ UCUCCCC@LB@3'-UUU...GACUA AACCC...AUA-5'@LB@ | |@LB@ 37 29@LB@@LB@@LB@Energy -12.75 kcal/mol@LB@Hybridization Energy -13.7147 kcal/mol@LB@Unfolding Energy - mRNA 0.82624 kcal/mol@LB@Unfolding Energy - sRNA 0.133643 kcal/mol@LB@@LB@Position - mRNA 182 -- 188@LB@Position - sRNA 30 -- 36@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 30 -- 36@LB@ |