Freiburg RNA Tools
CopraRNA - Results
BIF
IFF
CopraRNA 6214435

Input and runtime details for job 6214435 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 6214435 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:29:52 CET 2014
?Processing Started@ Mon Oct 27 19:30:06 CET 2014
?CopraRNA Finished & Post-Processing@ Mon Oct 27 22:45:49 CET 2014
?Post-Processing Finished@ Mon Oct 27 22:45:50 CET 2014
?Job Completed@ Mon Oct 27 22:46:06 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=6214435&toolName=CopraRNA ( 30 days expiry )

The job description you specified

CyaR

Output download complete results [zip]

Downloadable files

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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 3.945e-06 0.01422 b1825 yebO -18.42 0.000718 254 -- 287 16 -- 49 putative inner membrane protein   0
2 3.73e-05 0.06725 b1205 ychH -12.02 0.068234 242 -- 279 14 -- 48 DUF2583 family putative inner membrane protein   0
3 7.183e-05 0.08635 b2341 fadJ -9.23 0.234253 182 -- 217 1 -- 44 fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase   0
4 0.0002485 0.1928 b3428 glgP -10.99 0.112016 91 -- 131 1 -- 46 glycogen phosphorylase   0
5 0.0004289 0.238 b4074 nrfE -19.93 0.000126 131 -- 144 35 -- 48 heme lyase (NrfEFG) for insertion of heme into c552 subunit NrfE   3
6 0.000486 0.238 b1824 yobF -14.92 0.012558 176 -- 218 1 -- 43 DUF2527 family heat-induced protein   4
7 0.0005591 0.238 b1823 cspC -14.18 0.020218 20 -- 62 1 -- 43 stress protein member of the CspA-family   0
8 0.0005939 0.238 b0814 ompX -13.55 0.029594 192 -- 226 1 -- 48 outer membrane protein X   0
9 0.001733 0.5351 b2077 mdtD -16.66 0.003496 226 -- 254 1 -- 30 putative arabinose efflux transporter   0
10 0.001781 0.5351 b3456 livM -14.05 0.021926 245 -- 274 15 -- 42 leucine/isoleucine/valine transporter subunit   0

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.0.1