| 91 |
0.003099 |
0.1126 |
b2343 |
yfcZ |
-10.72 |
0.122030 |
27 -- 34 |
42 -- 49 |
UPF0381 family protein |
|
_____________26_______35\n_____________|________|\n5'-GAA...AAUUU________CGCAC...UGU-3'\n______________GGAGGUGG\n______________||||||||\n______________CCUCCACC\n3'-UUU...CGAUU________AAGGA...UCG-5'\n_____________|________|\n_____________50_______41\n |
28 -- 34 |
42 -- 48 |
-16.5707 kcal/mol |
3.08276 kcal/mol |
2.77009 kcal/mol |
26 35@LB@ | |@LB@5'-GAA...AAUUU CGCAC...UGU-3'@LB@ GGAGGUGG@LB@ ||||||||@LB@ CCUCCACC@LB@3'-UUU...CGAUU AAGGA...UCG-5'@LB@ | |@LB@ 50 41@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -16.5707 kcal/mol@LB@Unfolding Energy - mRNA 3.08276 kcal/mol@LB@Unfolding Energy - sRNA 2.77009 kcal/mol@LB@@LB@Position - mRNA 27 -- 34@LB@Position - sRNA 42 -- 49@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 92 |
0.00311 |
0.1126 |
b1042 |
csgA |
-13.02 |
0.037954 |
257 -- 281 |
29 -- 49 |
curlin subunit amyloid curli fibers cryptic |
|
_____________256_______________________282\n_____________|_________________________|\n5'-CAA...GCUCU__C_____UU______CA_______GGCGG...GUG-3'\n______________GG_AGGUG__GUUCCU__GUACGGC\n______________||_|||||__||||||__||||:||\n______________CC_UCCAC__CAAGGA__CAUGUCG\n3'-UUU...CGAUU________________C________AUCGU...UCG-5'\n_____________|_________________________|\n_____________50________________________28\n |
275 -- 281 |
29 -- 35 |
-27.0821 kcal/mol |
9.75964 kcal/mol |
4.30143 kcal/mol |
256 282@LB@ | |@LB@5'-CAA...GCUCU C UU CA GGCGG...GUG-3'@LB@ GG AGGUG GUUCCU GUACGGC@LB@ || ||||| |||||| ||||:||@LB@ CC UCCAC CAAGGA CAUGUCG@LB@3'-UUU...CGAUU C AUCGU...UCG-5'@LB@ | |@LB@ 50 28@LB@@LB@@LB@Energy -13.02 kcal/mol@LB@Hybridization Energy -27.0821 kcal/mol@LB@Unfolding Energy - mRNA 9.75964 kcal/mol@LB@Unfolding Energy - sRNA 4.30143 kcal/mol@LB@@LB@Position - mRNA 257 -- 281@LB@Position - sRNA 29 -- 49@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 93 |
0.003115 |
0.1126 |
b2595 |
bamD |
-5.90 |
0.625252 |
19 -- 35 |
31 -- 48 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________18_________________36\n_____________|__________________|\n5'-CUG...UGACC___U_______C______CCGUU...AUG-3'\n______________GAG_UGGUUUU_GG_ACA\n______________|||_|||||::_||_|||\n______________CUC_ACCAAGG_CC_UGU\n3'-UUU...GAUUC___C_______A__A___CGAUC...UCG-5'\n_____________|__________________|\n_____________49_________________30\n |
23 -- 29 |
38 -- 44 |
-14.3523 kcal/mol |
5.2001 kcal/mol |
3.25694 kcal/mol |
18 36@LB@ | |@LB@5'-CUG...UGACC U C CCGUU...AUG-3'@LB@ GAG UGGUUUU GG ACA@LB@ ||| |||||:: || |||@LB@ CUC ACCAAGG CC UGU@LB@3'-UUU...GAUUC C A A CGAUC...UCG-5'@LB@ | |@LB@ 49 30@LB@@LB@@LB@Energy -5.90 kcal/mol@LB@Hybridization Energy -14.3523 kcal/mol@LB@Unfolding Energy - mRNA 5.2001 kcal/mol@LB@Unfolding Energy - sRNA 3.25694 kcal/mol@LB@@LB@Position - mRNA 19 -- 35@LB@Position - sRNA 31 -- 48@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 94 |
0.003268 |
0.1162 |
b2687 |
luxS |
-10.18 |
0.155002 |
189 -- 196 |
42 -- 49 |
S-ribosylhomocysteine lyase |
|
_____________188______197\n_____________|________|\n5'-GAA...UUACC________CUAAA...UCA-3'\n______________GGAGGUGG\n______________||||||||\n______________CCUCCACC\n3'-UUU...CGAUU________AAGGA...UCG-5'\n_____________|________|\n_____________50_______41\n |
190 -- 196 |
42 -- 48 |
-16.7111 kcal/mol |
3.76521 kcal/mol |
2.77009 kcal/mol |
188 197@LB@ | |@LB@5'-GAA...UUACC CUAAA...UCA-3'@LB@ GGAGGUGG@LB@ ||||||||@LB@ CCUCCACC@LB@3'-UUU...CGAUU AAGGA...UCG-5'@LB@ | |@LB@ 50 41@LB@@LB@@LB@Energy -10.18 kcal/mol@LB@Hybridization Energy -16.7111 kcal/mol@LB@Unfolding Energy - mRNA 3.76521 kcal/mol@LB@Unfolding Energy - sRNA 2.77009 kcal/mol@LB@@LB@Position - mRNA 189 -- 196@LB@Position - sRNA 42 -- 49@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 95 |
0.003283 |
0.1162 |
b3298 |
rpsM |
-13.37 |
0.031144 |
190 -- 221 |
22 -- 50 |
30S ribosomal subunit protein S13 |
|
_____________189_________________________________222\n_____________|___________________________________|\n5'-GUC...AUAGU_____UGCAUA____C____________A______AACAU...UCC-3'\n______________AGGAG______GUGG__CC__GUAUAGC_GGCAUU\n______________|||||______||||__||__|||:|||_:|||||\n______________UCCUC______CACC__GG__CAUGUCG_UCGUAA\n3'-UUU...CCGAU_______________AA__AC_______A______AAUAC...UCG-5'\n_____________|___________________________________|\n_____________51__________________________________21\n |
208 -- 214 |
29 -- 35 |
-26.0998 kcal/mol |
8.11911 kcal/mol |
4.61397 kcal/mol |
189 222@LB@ | |@LB@5'-GUC...AUAGU UGCAUA C A AACAU...UCC-3'@LB@ AGGAG GUGG CC GUAUAGC GGCAUU@LB@ ||||| |||| || |||:||| :|||||@LB@ UCCUC CACC GG CAUGUCG UCGUAA@LB@3'-UUU...CCGAU AA AC A AAUAC...UCG-5'@LB@ | |@LB@ 51 21@LB@@LB@@LB@Energy -13.37 kcal/mol@LB@Hybridization Energy -26.0998 kcal/mol@LB@Unfolding Energy - mRNA 8.11911 kcal/mol@LB@Unfolding Energy - sRNA 4.61397 kcal/mol@LB@@LB@Position - mRNA 190 -- 221@LB@Position - sRNA 22 -- 50@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 96 |
0.003358 |
0.117 |
b3367 |
nirC |
-13.97 |
0.021706 |
56 -- 81 |
6 -- 37 |
nitrite transporter |
|
_____________55_________________________________82\n_____________|__________________________________|\n5'-AUG...CGGCG___________C______________A_______AACGG...UGG-3'\n______________UGGUGCAGCUG_GC________GGUU_AUGUUUU\n______________||||:|||||:_||________||||_|||||||\n______________ACCAUGUCGAU_CG________CCAA_UACAAAA\n3'-UUU...CAAGG______________UAAAAUAC____________AGUCG-5'\n_____________|__________________________________|\n_____________38_________________________________5\n |
75 -- 81 |
6 -- 12 |
-26.6239 kcal/mol |
9.95316 kcal/mol |
2.70019 kcal/mol |
55 82@LB@ | |@LB@5'-AUG...CGGCG C A AACGG...UGG-3'@LB@ UGGUGCAGCUG GC GGUU AUGUUUU@LB@ ||||:|||||: || |||| |||||||@LB@ ACCAUGUCGAU CG CCAA UACAAAA@LB@3'-UUU...CAAGG UAAAAUAC AGUCG-5'@LB@ | |@LB@ 38 5@LB@@LB@@LB@Energy -13.97 kcal/mol@LB@Hybridization Energy -26.6239 kcal/mol@LB@Unfolding Energy - mRNA 9.95316 kcal/mol@LB@Unfolding Energy - sRNA 2.70019 kcal/mol@LB@@LB@Position - mRNA 56 -- 81@LB@Position - sRNA 6 -- 37@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 97 |
0.003376 |
0.117 |
b2145 |
yeiS |
-12.83 |
0.042234 |
207 -- 237 |
4 -- 35 |
DUF2542 family protein |
|
_____________206_______________________________238\n_____________|_________________________________|\n5'-AUG...UGGAU___________U______C_____CC_______UCCUU...AUA-3'\n______________GUACAGC_AGU_UUUUGU__GUUG__GUUUUUU\n______________|||||||_||:_||||:|__|||:__||||||:\n______________CAUGUCG_UCG_AAAAUA__CAAU__CAAAAAG\n3'-UUU...AGGAC_______A___U______CC____A________UCG-5'\n_____________|_________________________________|\n_____________36________________________________3\n |
231 -- 237 |
4 -- 10 |
-21.2811 kcal/mol |
6.9566 kcal/mol |
1.49488 kcal/mol |
206 238@LB@ | |@LB@5'-AUG...UGGAU U C CC UCCUU...AUA-3'@LB@ GUACAGC AGU UUUUGU GUUG GUUUUUU@LB@ ||||||| ||: ||||:| |||: ||||||:@LB@ CAUGUCG UCG AAAAUA CAAU CAAAAAG@LB@3'-UUU...AGGAC A U CC A UCG-5'@LB@ | |@LB@ 36 3@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -21.2811 kcal/mol@LB@Unfolding Energy - mRNA 6.9566 kcal/mol@LB@Unfolding Energy - sRNA 1.49488 kcal/mol@LB@@LB@Position - mRNA 207 -- 237@LB@Position - sRNA 4 -- 35@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 98 |
0.003416 |
0.1172 |
b2024 |
hisA |
-13.42 |
0.030138 |
147 -- 168 |
25 -- 49 |
N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase |
|
_____________146_______________________169\n_____________|_________________________|\n5'-CAG...CACCC____C_____________C______GCUAA...CGC-3'\n______________GGAG___GUU_CUGGUGC_GCUGGU\n______________||||___|||_|||||:|_|||:|:\n______________CCUC___CAA_GACCAUG_CGAUCG\n3'-UUU...CGAUU____CAC___G_______U______UAAAA...UCG-5'\n_____________|_________________________|\n_____________50________________________24\n |
155 -- 161 |
32 -- 38 |
-27.4512 kcal/mol |
9.47045 kcal/mol |
4.5577 kcal/mol |
146 169@LB@ | |@LB@5'-CAG...CACCC C C GCUAA...CGC-3'@LB@ GGAG GUU CUGGUGC GCUGGU@LB@ |||| ||| |||||:| |||:|:@LB@ CCUC CAA GACCAUG CGAUCG@LB@3'-UUU...CGAUU CAC G U UAAAA...UCG-5'@LB@ | |@LB@ 50 24@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -27.4512 kcal/mol@LB@Unfolding Energy - mRNA 9.47045 kcal/mol@LB@Unfolding Energy - sRNA 4.5577 kcal/mol@LB@@LB@Position - mRNA 147 -- 168@LB@Position - sRNA 25 -- 49@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 99 |
0.003591 |
0.1219 |
b0533 |
sfmH |
-7.90 |
0.364135 |
113 -- 140 |
1 -- 34 |
FimA homolog function unknown |
b3145 b0941 |
_____________112________________________________141\n_____________|__________________________________|\n5'-GAC...AAGCU______A___CGUCACU_________________AGUUU...AUA-3'\n______________UACAGC_AGC_________GUUA____UUUCGGC\n______________||||||_|||_________||||____||||:||\n______________AUGUCG_UCG_________CAAU____AAAGUCG\n3'-UUU...GGACC______A___UAAAAUACC____ACAA_______-5'\n_____________|_________________________________|\n_____________35________________________________1\n |
134 -- 140 |
1 -- 7 |
-18.6412 kcal/mol |
9.24123 kcal/mol |
1.49507 kcal/mol |
112 141@LB@ | |@LB@5'-GAC...AAGCU A CGUCACU AGUUU...AUA-3'@LB@ UACAGC AGC GUUA UUUCGGC@LB@ |||||| ||| |||| ||||:||@LB@ AUGUCG UCG CAAU AAAGUCG@LB@3'-UUU...GGACC A UAAAAUACC ACAA -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -7.90 kcal/mol@LB@Hybridization Energy -18.6412 kcal/mol@LB@Unfolding Energy - mRNA 9.24123 kcal/mol@LB@Unfolding Energy - sRNA 1.49507 kcal/mol@LB@@LB@Position - mRNA 113 -- 140@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 100 |
0.003656 |
0.1229 |
b2287 |
nuoB |
-12.04 |
0.064387 |
31 -- 70 |
8 -- 47 |
NADH:ubiquinone oxidoreductase chain B |
|
_____________30___________________________________________71\n_____________|____________________________________________|\n5'-CAU...CGGCU____A__C___G___A__________AU______UU________ACUGG...UUA-3'\n______________GGGU_GG_UUU_UGG___AGCU_GCA__UUUUAU___UUGUGUU\n______________:|||_||_||:_|||___||||_|||__||||||___||:||||\n______________UCCA_CC_AAG_ACC___UCGA_CGU__AAAAUA___AAUACAA\n3'-UUU...AUUCC___________G___AUG____U___________CCC_______AAAGUCG-5'\n_____________|____________________________________________|\n_____________48___________________________________________7\n |
64 -- 70 |
8 -- 14 |
-25.7516 kcal/mol |
9.10307 kcal/mol |
4.60908 kcal/mol |
30 71@LB@ | |@LB@5'-CAU...CGGCU A C G A AU UU ACUGG...UUA-3'@LB@ GGGU GG UUU UGG AGCU GCA UUUUAU UUGUGUU@LB@ :||| || ||: ||| |||| ||| |||||| ||:||||@LB@ UCCA CC AAG ACC UCGA CGU AAAAUA AAUACAA@LB@3'-UUU...AUUCC G AUG U CCC AAAGUCG-5'@LB@ | |@LB@ 48 7@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -25.7516 kcal/mol@LB@Unfolding Energy - mRNA 9.10307 kcal/mol@LB@Unfolding Energy - sRNA 4.60908 kcal/mol@LB@@LB@Position - mRNA 31 -- 70@LB@Position - sRNA 8 -- 47@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 8 -- 14@LB@ |
