| 121 |
0.005123 |
0.1413 |
b1735 |
chbR |
-8.25 |
0.324466 |
38 -- 46 |
30 -- 38 |
repressor of chb operon for N N'-diacetylchitobiose utilization |
|
_____________37________47\n_____________|_________|\n5'-GAU...CGCAU_________ACGAA...CUG-3'\n______________CUGGUACAG\n______________|||||||||\n______________GACCAUGUC\n3'-UUU...CCAAG_________GAUCG...UCG-5'\n_____________|_________|\n_____________39________29\n |
40 -- 46 |
30 -- 36 |
-15.5432 kcal/mol |
3.07825 kcal/mol |
4.2107 kcal/mol |
37 47@LB@ | |@LB@5'-GAU...CGCAU ACGAA...CUG-3'@LB@ CUGGUACAG@LB@ |||||||||@LB@ GACCAUGUC@LB@3'-UUU...CCAAG GAUCG...UCG-5'@LB@ | |@LB@ 39 29@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -15.5432 kcal/mol@LB@Unfolding Energy - mRNA 3.07825 kcal/mol@LB@Unfolding Energy - sRNA 4.2107 kcal/mol@LB@@LB@Position - mRNA 38 -- 46@LB@Position - sRNA 30 -- 38@LB@Position Seed - mRNA 40 -- 46@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 122 |
0.005134 |
0.1413 |
b0437 |
clpP |
-11.97 |
0.066798 |
162 -- 180 |
3 -- 36 |
proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases |
|
_____________161________________________________181\n_____________|__________________________________|\n5'-CCA...CAAUC________A_________________________AUUUU...UCU-3'\n______________GGUACAGC_GGU_______________UUUUUCA\n______________||||||||_:|:_______________|||||||\n______________CCAUGUCG_UCG_______________AAAAAGU\n3'-UUU...AAGGA________A___UAAAAUACCCAAUAC_______CG-5'\n_____________|__________________________________|\n_____________37_________________________________2\n |
174 -- 180 |
3 -- 9 |
-16.9285 kcal/mol |
3.46571 kcal/mol |
1.49503 kcal/mol |
161 181@LB@ | |@LB@5'-CCA...CAAUC A AUUUU...UCU-3'@LB@ GGUACAGC GGU UUUUUCA@LB@ |||||||| :|: |||||||@LB@ CCAUGUCG UCG AAAAAGU@LB@3'-UUU...AAGGA A UAAAAUACCCAAUAC CG-5'@LB@ | |@LB@ 37 2@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -16.9285 kcal/mol@LB@Unfolding Energy - mRNA 3.46571 kcal/mol@LB@Unfolding Energy - sRNA 1.49503 kcal/mol@LB@@LB@Position - mRNA 162 -- 180@LB@Position - sRNA 3 -- 36@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 123 |
0.005173 |
0.1413 |
b0839 |
dacC |
-12.36 |
0.054489 |
29 -- 38 |
24 -- 33 |
D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a |
|
_____________28_________39\n_____________|__________|\n5'-AUG...AAGCA__________AAAAA...AAG-3'\n______________ACAGCUGGCA\n______________||||||:|||\n______________UGUCGAUCGU\n3'-UUU...GACCA__________AAAAU...UCG-5'\n_____________|__________|\n_____________34_________23\n |
32 -- 38 |
24 -- 30 |
-17.0494 kcal/mol |
3.2632 kcal/mol |
1.42716 kcal/mol |
28 39@LB@ | |@LB@5'-AUG...AAGCA AAAAA...AAG-3'@LB@ ACAGCUGGCA@LB@ ||||||:|||@LB@ UGUCGAUCGU@LB@3'-UUU...GACCA AAAAU...UCG-5'@LB@ | |@LB@ 34 23@LB@@LB@@LB@Energy -12.36 kcal/mol@LB@Hybridization Energy -17.0494 kcal/mol@LB@Unfolding Energy - mRNA 3.2632 kcal/mol@LB@Unfolding Energy - sRNA 1.42716 kcal/mol@LB@@LB@Position - mRNA 29 -- 38@LB@Position - sRNA 24 -- 33@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 124 |
0.00526 |
0.1416 |
b3170 |
rimP |
-10.72 |
0.121991 |
191 -- 217 |
24 -- 49 |
ribosome maturation factor for 30S subunits |
|
_____________190__________________________218\n_____________|____________________________|\n5'-CUU...GUCUU________G_____UCC___UUAG____AAAAU...CAU-3'\n______________GGGGGUGG__CUUG___ACA____AGCA\n______________||:|||||__|:||___|||____||||\n______________CCUCCACC__GGAC___UGU____UCGU\n3'-UUU...CGAUU________AA____CA____CGA_____AAAAU...UCG-5'\n_____________|____________________________|\n_____________50___________________________23\n |
192 -- 198 |
42 -- 48 |
-23.9554 kcal/mol |
8.6777 kcal/mol |
4.5591 kcal/mol |
190 218@LB@ | |@LB@5'-CUU...GUCUU G UCC UUAG AAAAU...CAU-3'@LB@ GGGGGUGG CUUG ACA AGCA@LB@ ||:||||| |:|| ||| ||||@LB@ CCUCCACC GGAC UGU UCGU@LB@3'-UUU...CGAUU AA CA CGA AAAAU...UCG-5'@LB@ | |@LB@ 50 23@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -23.9554 kcal/mol@LB@Unfolding Energy - mRNA 8.6777 kcal/mol@LB@Unfolding Energy - sRNA 4.5591 kcal/mol@LB@@LB@Position - mRNA 191 -- 217@LB@Position - sRNA 24 -- 49@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 125 |
0.005266 |
0.1416 |
b0957 |
ompA |
-12.88 |
0.041122 |
280 -- 293 |
25 -- 39 |
outer membrane protein A (3a;II*;G;d) |
|
_____________279_____________294\n_____________|_______________|\n5'-CUU...UAACA_______________GCUAAAC-3'\n______________CCUGGUACA_CUGGU\n______________|||||||||_||:|:\n______________GGACCAUGU_GAUCG\n3'-UUU...ACCAA_________C_____UAAAA...UCG-5'\n_____________|_______________|\n_____________40______________24\n |
282 -- 288 |
31 -- 37 |
-21.2564 kcal/mol |
3.82713 kcal/mol |
4.55153 kcal/mol |
279 294@LB@ | |@LB@5'-CUU...UAACA GCUAAAC-3'@LB@ CCUGGUACA CUGGU@LB@ ||||||||| ||:|:@LB@ GGACCAUGU GAUCG@LB@3'-UUU...ACCAA C UAAAA...UCG-5'@LB@ | |@LB@ 40 24@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -21.2564 kcal/mol@LB@Unfolding Energy - mRNA 3.82713 kcal/mol@LB@Unfolding Energy - sRNA 4.55153 kcal/mol@LB@@LB@Position - mRNA 280 -- 293@LB@Position - sRNA 25 -- 39@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 126 |
0.00537 |
0.142 |
b3789 |
rffH |
-9.20 |
0.230539 |
124 -- 140 |
30 -- 46 |
glucose-1-phosphate thymidylyltransferase |
|
_____________123_______________141\n_____________|_________________|\n5'-GGC...AAGCU_____AAG_A_______GACGG...UGA-3'\n______________GGUGG___C_GGUGCAG\n______________|||||___|_|||:|||\n______________CCACC___G_CCAUGUC\n3'-UUU...UUCCU_____AAG_A_______GAUCG...UCG-5'\n_____________|_________________|\n_____________47________________29\n |
134 -- 140 |
30 -- 36 |
-19.3061 kcal/mol |
5.8192 kcal/mol |
4.28755 kcal/mol |
123 141@LB@ | |@LB@5'-GGC...AAGCU AAG A GACGG...UGA-3'@LB@ GGUGG C GGUGCAG@LB@ ||||| | |||:|||@LB@ CCACC G CCAUGUC@LB@3'-UUU...UUCCU AAG A GAUCG...UCG-5'@LB@ | |@LB@ 47 29@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -19.3061 kcal/mol@LB@Unfolding Energy - mRNA 5.8192 kcal/mol@LB@Unfolding Energy - sRNA 4.28755 kcal/mol@LB@@LB@Position - mRNA 124 -- 140@LB@Position - sRNA 30 -- 46@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 127 |
0.005388 |
0.142 |
b2721 |
hycE |
-10.66 |
0.125013 |
137 -- 158 |
1 -- 36 |
hydrogenase 3 large subunit |
|
_____________136___________________________________159\n_____________|_____________________________________|\n5'-UUC...GGCUG___UU____UU__________________________GUUCG...UGA-3'\n______________GGU__GGCU__GCAU_______________UUUUAGC\n______________|||__:|||__||||_______________|||:|||\n______________CCA__UCGA__CGUA_______________AAAGUCG\n3'-UUU...AAGGA___UG____U_____AAAUACCCAAUACAA_______-5'\n_____________|____________________________________|\n_____________37___________________________________1\n |
152 -- 158 |
1 -- 7 |
-16.3373 kcal/mol |
4.17778 kcal/mol |
1.49509 kcal/mol |
136 159@LB@ | |@LB@5'-UUC...GGCUG UU UU GUUCG...UGA-3'@LB@ GGU GGCU GCAU UUUUAGC@LB@ ||| :||| |||| |||:|||@LB@ CCA UCGA CGUA AAAGUCG@LB@3'-UUU...AAGGA UG U AAAUACCCAAUACAA -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -10.66 kcal/mol@LB@Hybridization Energy -16.3373 kcal/mol@LB@Unfolding Energy - mRNA 4.17778 kcal/mol@LB@Unfolding Energy - sRNA 1.49509 kcal/mol@LB@@LB@Position - mRNA 137 -- 158@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 128 |
0.005434 |
0.142 |
b1628 |
rsxB |
-10.87 |
0.114026 |
241 -- 273 |
10 -- 44 |
SoxR iron-sulfur cluster reduction factor component; putative iron-sulfur protein |
|
_____________240___________________________________274\n_____________|_____________________________________|\n5'-CAC...CCUGC___G______CGUU____GC_____C___________CCUCC...ACG-3'\n______________UGG__CCUGG____UGGC___CAUU___UGGGUUAUG\n______________|||__|||||____::||___||||___|||||||||\n______________ACC__GGACC____GUCG___GUAA___ACCCAAUAC\n3'-UUU...CCUCC___AA_____AU______AUC____AAU_________AAAAA...UCG-5'\n_____________|_____________________________________|\n_____________45____________________________________9\n |
267 -- 273 |
10 -- 16 |
-28.3112 kcal/mol |
12.8396 kcal/mol |
4.60525 kcal/mol |
240 274@LB@ | |@LB@5'-CAC...CCUGC G CGUU GC C CCUCC...ACG-3'@LB@ UGG CCUGG UGGC CAUU UGGGUUAUG@LB@ ||| ||||| ::|| |||| |||||||||@LB@ ACC GGACC GUCG GUAA ACCCAAUAC@LB@3'-UUU...CCUCC AA AU AUC AAU AAAAA...UCG-5'@LB@ | |@LB@ 45 9@LB@@LB@@LB@Energy -10.87 kcal/mol@LB@Hybridization Energy -28.3112 kcal/mol@LB@Unfolding Energy - mRNA 12.8396 kcal/mol@LB@Unfolding Energy - sRNA 4.60525 kcal/mol@LB@@LB@Position - mRNA 241 -- 273@LB@Position - sRNA 10 -- 44@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 129 |
0.005449 |
0.142 |
b2502 |
ppx |
-11.35 |
0.090652 |
145 -- 164 |
17 -- 36 |
exopolyphosphatase |
|
_____________144__________________165\n_____________|____________________|\n5'-GGC...GUACG__C__________A______ACUAC...GUG-3'\n______________GG_GCAGUUGGCG_UUUAUG\n______________||_:|||:|:||:_||||||\n______________CC_UGUCGAUCGU_AAAUAC\n3'-UUU...AAGGA__A__________A______CCAAU...UCG-5'\n_____________|____________________|\n_____________37___________________16\n |
151 -- 157 |
24 -- 30 |
-21.6291 kcal/mol |
8.82633 kcal/mol |
1.44969 kcal/mol |
144 165@LB@ | |@LB@5'-GGC...GUACG C A ACUAC...GUG-3'@LB@ GG GCAGUUGGCG UUUAUG@LB@ || :|||:|:||: ||||||@LB@ CC UGUCGAUCGU AAAUAC@LB@3'-UUU...AAGGA A A CCAAU...UCG-5'@LB@ | |@LB@ 37 16@LB@@LB@@LB@Energy -11.35 kcal/mol@LB@Hybridization Energy -21.6291 kcal/mol@LB@Unfolding Energy - mRNA 8.82633 kcal/mol@LB@Unfolding Energy - sRNA 1.44969 kcal/mol@LB@@LB@Position - mRNA 145 -- 164@LB@Position - sRNA 17 -- 36@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 130 |
0.005552 |
0.1429 |
b1622 |
malY |
-10.60 |
0.128513 |
216 -- 278 |
1 -- 51 |
PLP-dependent beta-cystathionase and maltose regulon regulator |
|
_____________215_____________________________________________________________279\n_____________|_______________________________________________________________|\n5'-UCG...UUUCA____UC____A__G_CAUG___CA______ACACA_____A______CGCUGACCG_______ACUGC...UCA-3'\n______________AAGG__GUGG_UC_U____GCA__UGGUGU_____GUGGG_UUAUGU_________UUUCGGC\n______________||||__||||_||_|____:||__|:|::|_____:||||_||||||_________||||:||\n______________UUCC__CACC_AG_A____UGU__AUCGUA_____UACCC_AAUACA_________AAAGUCG\n3'-UUU...UCCGA____UC____A__G_CCA____CG______AAA______________A_______________-5'\n_____________|______________________________________________________________|\n_____________52_____________________________________________________________1\n |
272 -- 278 |
1 -- 7 |
-34.7892 kcal/mol |
19.4932 kcal/mol |
4.69283 kcal/mol |
215 279@LB@ | |@LB@5'-UCG...UUUCA UC A G CAUG CA ACACA A CGCUGACCG ACUGC...UCA-3'@LB@ AAGG GUGG UC U GCA UGGUGU GUGGG UUAUGU UUUCGGC@LB@ |||| |||| || | :|| |:|::| :|||| |||||| ||||:||@LB@ UUCC CACC AG A UGU AUCGUA UACCC AAUACA AAAGUCG@LB@3'-UUU...UCCGA UC A G CCA CG AAA A -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -34.7892 kcal/mol@LB@Unfolding Energy - mRNA 19.4932 kcal/mol@LB@Unfolding Energy - sRNA 4.69283 kcal/mol@LB@@LB@Position - mRNA 216 -- 278@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 1 -- 7@LB@ |
