| 11 |
3.883e-05 |
0.01168 |
b4074 |
nrfE |
-17.71 |
0.001322 |
131 -- 144 |
35 -- 48 |
heme lyase (NrfEFG) for insertion of heme into c552 subunit NrfE |
|
_____________130____________145\n_____________|______________|\n5'-ACC...GAAAA______________ACGUA...UGC-3'\n______________GAGGUGGUUUCUGG\n______________|||||||||:||||\n______________CUCCACCAAGGACC\n3'-UUU...GAUUC______________AUGUC...UCG-5'\n_____________|______________|\n_____________49_____________34\n |
138 -- 144 |
35 -- 41 |
-26.5218 kcal/mol |
5.67902 kcal/mol |
3.13693 kcal/mol |
130 145@LB@ | |@LB@5'-ACC...GAAAA ACGUA...UGC-3'@LB@ GAGGUGGUUUCUGG@LB@ |||||||||:||||@LB@ CUCCACCAAGGACC@LB@3'-UUU...GAUUC AUGUC...UCG-5'@LB@ | |@LB@ 49 34@LB@@LB@@LB@Energy -17.71 kcal/mol@LB@Hybridization Energy -26.5218 kcal/mol@LB@Unfolding Energy - mRNA 5.67902 kcal/mol@LB@Unfolding Energy - sRNA 3.13693 kcal/mol@LB@@LB@Position - mRNA 131 -- 144@LB@Position - sRNA 35 -- 48@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 12 |
4.171e-05 |
0.01168 |
b0814 |
ompX |
-14.35 |
0.017131 |
192 -- 226 |
1 -- 48 |
outer membrane protein X |
|
_____________191______________________________________________227\n_____________|________________________________________________|\n5'-CUG...CAUUU_________A___AAAAAAAUU__________________C_______ACUGG...CAC-3'\n______________GAGGUGGUU__UG_________GCA____________UGU_UUUCAGC\n______________|||||||||__||_________|||____________|||_|||||||\n______________CUCCACCAA__AC_________CGU____________ACA_AAAGUCG\n3'-UUU...GAUUC_________GG__CAUGUCGAU___AAAAUACCCAAU___A_______-5'\n_____________|_______________________________________________|\n_____________49______________________________________________1\n |
220 -- 226 |
1 -- 7 |
-27.166 kcal/mol |
8.20777 kcal/mol |
4.60955 kcal/mol |
191 227@LB@ | |@LB@5'-CUG...CAUUU A AAAAAAAUU C ACUGG...CAC-3'@LB@ GAGGUGGUU UG GCA UGU UUUCAGC@LB@ ||||||||| || ||| ||| |||||||@LB@ CUCCACCAA AC CGU ACA AAAGUCG@LB@3'-UUU...GAUUC GG CAUGUCGAU AAAAUACCCAAU A -5'@LB@ | |@LB@ 49 1@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -27.166 kcal/mol@LB@Unfolding Energy - mRNA 8.20777 kcal/mol@LB@Unfolding Energy - sRNA 4.60955 kcal/mol@LB@@LB@Position - mRNA 192 -- 226@LB@Position - sRNA 1 -- 48@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 13 |
6.02e-05 |
0.01556 |
b1686 |
menI |
-18.50 |
0.000608 |
260 -- 300 |
10 -- 49 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________259_______________________________________300\n_____________|_________________________________________|\n5'-GGC...AACAU__U____________A___UC___UUGAACA___U___G___-3'\n______________GG_GG_GGUUCCUGG_UAU__GCU_______UAU_GGU_AUG\n______________||_||_|||||||||_||:__|||_______|||_|||_|||\n______________CC_CC_CCAAGGACC_AUG__CGA_______AUA_CCA_UAC\n3'-UUU...CGAUU__U__A_____________U____UCGUAAA___C___A___AAAAA...UCG-5'\n_____________|__________________________________________|\n_____________50_________________________________________9\n |
267 -- 273 |
35 -- 41 |
-31.9875 kcal/mol |
8.87718 kcal/mol |
4.60649 kcal/mol |
259 300@LB@ | |@LB@5'-GGC...AACAU U A UC UUGAACA U G -3'@LB@ GG GG GGUUCCUGG UAU GCU UAU GGU AUG@LB@ || || ||||||||| ||: ||| ||| ||| |||@LB@ CC CC CCAAGGACC AUG CGA AUA CCA UAC@LB@3'-UUU...CGAUU U A U UCGUAAA C A AAAAA...UCG-5'@LB@ | |@LB@ 50 9@LB@@LB@@LB@Energy -18.50 kcal/mol@LB@Hybridization Energy -31.9875 kcal/mol@LB@Unfolding Energy - mRNA 8.87718 kcal/mol@LB@Unfolding Energy - sRNA 4.60649 kcal/mol@LB@@LB@Position - mRNA 260 -- 300@LB@Position - sRNA 10 -- 49@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 14 |
9.306e-05 |
0.02121 |
b1205 |
ychH |
-11.92 |
0.068307 |
242 -- 277 |
15 -- 49 |
DUF2583 family putative inner membrane protein |
|
_____________241____________________________________278\n_____________|______________________________________|\n5'-CAA...CUCAU____U___G________GUAAU_G____CGGC______GUAUU...UAC-3'\n______________GGGG_UGG__UCUGGUG_____G_UGGU_____GUGGG\n______________||:|_|||__:|||||:_____|_|:|:_____:||||\n______________CCUC_ACC__GGACCAU_____C_AUCG_____UACCC\n3'-UUU...CGAUU____C___AA_______GU____G____UAAAA_____AAUAC...UCG-5'\n_____________|______________________________________|\n_____________50_____________________________________14\n |
251 -- 257 |
33 -- 39 |
-28.7764 kcal/mol |
12.2787 kcal/mol |
4.57366 kcal/mol |
241 278@LB@ | |@LB@5'-CAA...CUCAU U G GUAAU G CGGC GUAUU...UAC-3'@LB@ GGGG UGG UCUGGUG G UGGU GUGGG@LB@ ||:| ||| :|||||: | |:|: :||||@LB@ CCUC ACC GGACCAU C AUCG UACCC@LB@3'-UUU...CGAUU C AA GU G UAAAA AAUAC...UCG-5'@LB@ | |@LB@ 50 14@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -28.7764 kcal/mol@LB@Unfolding Energy - mRNA 12.2787 kcal/mol@LB@Unfolding Energy - sRNA 4.57366 kcal/mol@LB@@LB@Position - mRNA 242 -- 277@LB@Position - sRNA 15 -- 49@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 15 |
0.0001004 |
0.02121 |
b2416 |
ptsI |
-14.97 |
0.011388 |
179 -- 212 |
1 -- 32 |
PEP-protein phosphotransferase of PTS system (enzyme I) |
|
_____________178_________________________________213\n_____________|___________________________________|\n5'-GUG...AAAAU____CACA____AGG___________A___CA___AUUUU...CCG-3'\n______________CAGU____AGUA___UA_GGGUUAUG_UUU__GGC\n______________|||:____||:|___||_||||||||_|||__:||\n______________GUCG____UCGU___AU_CCCAAUAC_AAA__UCG\n3'-UUU...ACCAU____A_______AAA__A________A___AG___-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
197 -- 203 |
10 -- 16 |
-21.5882 kcal/mol |
5.12711 kcal/mol |
1.49075 kcal/mol |
178 213@LB@ | |@LB@5'-GUG...AAAAU CACA AGG A CA AUUUU...CCG-3'@LB@ CAGU AGUA UA GGGUUAUG UUU GGC@LB@ |||: ||:| || |||||||| ||| :||@LB@ GUCG UCGU AU CCCAAUAC AAA UCG@LB@3'-UUU...ACCAU A AAA A A AG -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -14.97 kcal/mol@LB@Hybridization Energy -21.5882 kcal/mol@LB@Unfolding Energy - mRNA 5.12711 kcal/mol@LB@Unfolding Energy - sRNA 1.49075 kcal/mol@LB@@LB@Position - mRNA 179 -- 212@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 16 |
0.000101 |
0.02121 |
b3428 |
glgP |
-10.27 |
0.148738 |
91 -- 131 |
1 -- 46 |
glycogen phosphorylase |
|
_____________90_____________________________________________132\n_____________|______________________________________________|\n5'-CCA...ACUGU__C_____G__CA___UCA____________CA____GA_______UGGCA...CGG-3'\n______________GG_GGUUU_UG__ACG___GGC____UAUGG___AUG__UUUUAGC\n______________||_||||:_||__||:___:||____|||||___|||__|||:|||\n______________CC_CCAAG_AC__UGU___UCG____AUACC___UAC__AAAGUCG\n3'-UUU...UUCCU__A_____G__CA___CGA___UAAA_____CAA___AA_______-5'\n_____________|_____________________________________________|\n_____________47____________________________________________1\n |
125 -- 131 |
1 -- 7 |
-28.7783 kcal/mol |
13.8975 kcal/mol |
4.60935 kcal/mol |
90 132@LB@ | |@LB@5'-CCA...ACUGU C G CA UCA CA GA UGGCA...CGG-3'@LB@ GG GGUUU UG ACG GGC UAUGG AUG UUUUAGC@LB@ || ||||: || ||: :|| ||||| ||| |||:|||@LB@ CC CCAAG AC UGU UCG AUACC UAC AAAGUCG@LB@3'-UUU...UUCCU A G CA CGA UAAA CAA AA -5'@LB@ | |@LB@ 47 1@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -28.7783 kcal/mol@LB@Unfolding Energy - mRNA 13.8975 kcal/mol@LB@Unfolding Energy - sRNA 4.60935 kcal/mol@LB@@LB@Position - mRNA 91 -- 131@LB@Position - sRNA 1 -- 46@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 17 |
0.0001135 |
0.02244 |
b3531 |
bcsZ |
-11.80 |
0.072553 |
125 -- 136 |
14 -- 30 |
endo-1 4-D-glucanase |
|
_____________124_______________137\n_____________|_________________|\n5'-UCA...AUAUU_________________ACUGU...AGG-3'\n______________GCUGGCA_____UGGGU\n______________|||:|||_____|||||\n______________CGAUCGU_____ACCCA\n3'-UUU...CAUGU_______AAAAU_____AUACA...UCG-5'\n_____________|_________________|\n_____________31________________13\n |
125 -- 131 |
24 -- 30 |
-17.2227 kcal/mol |
4.01076 kcal/mol |
1.40705 kcal/mol |
124 137@LB@ | |@LB@5'-UCA...AUAUU ACUGU...AGG-3'@LB@ GCUGGCA UGGGU@LB@ |||:||| |||||@LB@ CGAUCGU ACCCA@LB@3'-UUU...CAUGU AAAAU AUACA...UCG-5'@LB@ | |@LB@ 31 13@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -17.2227 kcal/mol@LB@Unfolding Energy - mRNA 4.01076 kcal/mol@LB@Unfolding Energy - sRNA 1.40705 kcal/mol@LB@@LB@Position - mRNA 125 -- 136@LB@Position - sRNA 14 -- 30@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 18 |
0.0001426 |
0.02662 |
b1824 |
yobF |
-14.57 |
0.014857 |
186 -- 218 |
1 -- 36 |
DUF2527 family heat-induced protein |
|
_____________185__________________________________219\n_____________|____________________________________|\n5'-GCC...AACGA____________UG______U__GGCA_________AAAGA...UGU-3'\n______________GGUACAGUU__C__UUUAUG_GU_____UUUUCAGU\n______________|||||||:|__|__||||||_||_____|||||||:\n______________CCAUGUCGA__G__AAAUAC_CA_____AAAAGUCG\n3'-UUU...AAGGA_________UC_UA______C__AUACA________-5'\n_____________|___________________________________|\n_____________37__________________________________1\n |
212 -- 218 |
1 -- 7 |
-24.9268 kcal/mol |
8.86182 kcal/mol |
1.49509 kcal/mol |
185 219@LB@ | |@LB@5'-GCC...AACGA UG U GGCA AAAGA...UGU-3'@LB@ GGUACAGUU C UUUAUG GU UUUUCAGU@LB@ |||||||:| | |||||| || |||||||:@LB@ CCAUGUCGA G AAAUAC CA AAAAGUCG@LB@3'-UUU...AAGGA UC UA C AUACA -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -14.57 kcal/mol@LB@Hybridization Energy -24.9268 kcal/mol@LB@Unfolding Energy - mRNA 8.86182 kcal/mol@LB@Unfolding Energy - sRNA 1.49509 kcal/mol@LB@@LB@Position - mRNA 186 -- 218@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 19 |
0.000151 |
0.02671 |
b2142 |
yohK |
-18.84 |
0.000427 |
90 -- 130 |
4 -- 49 |
LrgB family inner membrane protein |
|
_____________89______________________________________________131\n_____________|_______________________________________________|\n5'-GUA...GGCCC__UA____U_____________C____CGCU______G_________UGGUG...CGU-3'\n______________GG__GUGG_UUCCU_GUGCAGU_AGUA_______GGU___GUUUUUC\n______________||__||||_|||||_||:|||:_||:|_______|||___|||||||\n______________CC__CACC_AAGGA_CAUGUCG_UCGU_______CCA___CAAAAAG\n3'-UUU...CGAUU__UC__________C_______A____AAAAUAC___AUA_______UCG-5'\n_____________|_______________________________________________|\n_____________50______________________________________________3\n |
124 -- 130 |
4 -- 10 |
-35.205 kcal/mol |
11.7562 kcal/mol |
4.60954 kcal/mol |
89 131@LB@ | |@LB@5'-GUA...GGCCC UA U C CGCU G UGGUG...CGU-3'@LB@ GG GUGG UUCCU GUGCAGU AGUA GGU GUUUUUC@LB@ || |||| ||||| ||:|||: ||:| ||| |||||||@LB@ CC CACC AAGGA CAUGUCG UCGU CCA CAAAAAG@LB@3'-UUU...CGAUU UC C A AAAAUAC AUA UCG-5'@LB@ | |@LB@ 50 3@LB@@LB@@LB@Energy -18.84 kcal/mol@LB@Hybridization Energy -35.205 kcal/mol@LB@Unfolding Energy - mRNA 11.7562 kcal/mol@LB@Unfolding Energy - sRNA 4.60954 kcal/mol@LB@@LB@Position - mRNA 90 -- 130@LB@Position - sRNA 4 -- 49@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 20 |
0.0001678 |
0.0282 |
b2056 |
wcaD |
-17.66 |
0.001373 |
77 -- 104 |
24 -- 48 |
putative colanic acid polymerase |
|
_____________76___________________________105\n_____________|____________________________|\n5'-GCC...AAGAA______CUGCAA____________A___AACCG...UCA-3'\n______________GAGGUG______CUGGUGCAGUUA_GCA\n______________||||||______|||||:|||:||_|||\n______________CUCCAC______GACCAUGUCGAU_CGU\n3'-UUU...GAUUC______CAAG__________________AAAAU...UCG-5'\n_____________|____________________________|\n_____________49___________________________23\n |
94 -- 100 |
27 -- 33 |
-32.1729 kcal/mol |
9.95006 kcal/mol |
4.55899 kcal/mol |
76 105@LB@ | |@LB@5'-GCC...AAGAA CUGCAA A AACCG...UCA-3'@LB@ GAGGUG CUGGUGCAGUUA GCA@LB@ |||||| |||||:|||:|| |||@LB@ CUCCAC GACCAUGUCGAU CGU@LB@3'-UUU...GAUUC CAAG AAAAU...UCG-5'@LB@ | |@LB@ 49 23@LB@@LB@@LB@Energy -17.66 kcal/mol@LB@Hybridization Energy -32.1729 kcal/mol@LB@Unfolding Energy - mRNA 9.95006 kcal/mol@LB@Unfolding Energy - sRNA 4.55899 kcal/mol@LB@@LB@Position - mRNA 77 -- 104@LB@Position - sRNA 24 -- 48@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 27 -- 33@LB@ |
