| 81 |
0.002689 |
0.1082 |
b1498 |
ydeN |
-15.88 |
0.005981 |
253 -- 275 |
21 -- 44 |
putative Ser-type periplasmic non-aryl sulfatase |
b3678 b3801 |
_____________252______________________276\n_____________|________________________|\n5'-AUU...GAUAC___CA___________________GCUGC...UAA-3'\n______________UGG__UCUGGUAUGGCU_GCAUUU\n______________|||__:||||||::|||_||||||\n______________ACC__GGACCAUGUCGA_CGUAAA\n3'-UUU...CCUCC___AA____________U______AUACC...UCG-5'\n_____________|________________________|\n_____________45_______________________20\n |
263 -- 269 |
28 -- 34 |
-26.8614 kcal/mol |
6.42389 kcal/mol |
4.55918 kcal/mol |
252 276@LB@ | |@LB@5'-AUU...GAUAC CA GCUGC...UAA-3'@LB@ UGG UCUGGUAUGGCU GCAUUU@LB@ ||| :||||||::||| ||||||@LB@ ACC GGACCAUGUCGA CGUAAA@LB@3'-UUU...CCUCC AA U AUACC...UCG-5'@LB@ | |@LB@ 45 20@LB@@LB@@LB@Energy -15.88 kcal/mol@LB@Hybridization Energy -26.8614 kcal/mol@LB@Unfolding Energy - mRNA 6.42389 kcal/mol@LB@Unfolding Energy - sRNA 4.55918 kcal/mol@LB@@LB@Position - mRNA 253 -- 275@LB@Position - sRNA 21 -- 44@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 82 |
0.002694 |
0.1082 |
b2474 |
tmcA |
-11.34 |
0.091143 |
115 -- 147 |
1 -- 34 |
elongator methionine tRNA (ac4C34) acetyltransferase |
|
_____________114________________________________148\n_____________|__________________________________|\n5'-GAU...AACGC__________UUAAACGU____UCGACAG_____GAUCC...UUG-3'\n______________UACAGCUGGU________GGUU________CGGC\n______________|||||||:|:________||||________|:||\n______________AUGUCGAUCG________CCAA________GUCG\n3'-UUU...GGACC__________UAAAAUAC____UACAAAAA____-5'\n_____________|_________________________________|\n_____________35________________________________1\n |
118 -- 124 |
25 -- 31 |
-23.7384 kcal/mol |
10.9014 kcal/mol |
1.49507 kcal/mol |
114 148@LB@ | |@LB@5'-GAU...AACGC UUAAACGU UCGACAG GAUCC...UUG-3'@LB@ UACAGCUGGU GGUU CGGC@LB@ |||||||:|: |||| |:||@LB@ AUGUCGAUCG CCAA GUCG@LB@3'-UUU...GGACC UAAAAUAC UACAAAAA -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -11.34 kcal/mol@LB@Hybridization Energy -23.7384 kcal/mol@LB@Unfolding Energy - mRNA 10.9014 kcal/mol@LB@Unfolding Energy - sRNA 1.49507 kcal/mol@LB@@LB@Position - mRNA 115 -- 147@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 83 |
0.002775 |
0.1082 |
b2049 |
cpsB |
-6.85 |
0.497101 |
286 -- 298 |
17 -- 31 |
mannose-1-phosphate guanyltransferase |
|
_____________285_____________299\n_____________|_______________|\n5'-ACA...UCCCA_______________CC-3'\n______________AGC_AGU_UUUUAUG\n______________|||_||:_|||||||\n______________UCG_UCG_AAAAUAC\n3'-UUU...CCAUG___A___U_______CCAAU...UCG-5'\n_____________|_______________|\n_____________32______________16\n |
292 -- 298 |
17 -- 23 |
-8.99018 kcal/mol |
0.716641 kcal/mol |
1.4259 kcal/mol |
285 299@LB@ | |@LB@5'-ACA...UCCCA CC-3'@LB@ AGC AGU UUUUAUG@LB@ ||| ||: |||||||@LB@ UCG UCG AAAAUAC@LB@3'-UUU...CCAUG A U CCAAU...UCG-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -6.85 kcal/mol@LB@Hybridization Energy -8.99018 kcal/mol@LB@Unfolding Energy - mRNA 0.716641 kcal/mol@LB@Unfolding Energy - sRNA 1.4259 kcal/mol@LB@@LB@Position - mRNA 286 -- 298@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 84 |
0.00278 |
0.1082 |
b1418 |
cybB |
-11.15 |
0.099871 |
281 -- 297 |
37 -- 49 |
cytochrome b561 |
|
_____________280_______________298\n_____________|_________________|\n5'-AAC...GCAAU____UUUC_________UCC-3'\n______________GGAG____GUGGUUUCU\n______________||||____||||||:||\n______________CCUC____CACCAAGGA\n3'-UUU...CGAUU_________________CCAUG...UCG-5'\n_____________|_________________|\n_____________50________________36\n |
291 -- 297 |
37 -- 43 |
-16.7846 kcal/mol |
2.49998 kcal/mol |
3.13428 kcal/mol |
280 298@LB@ | |@LB@5'-AAC...GCAAU UUUC UCC-3'@LB@ GGAG GUGGUUUCU@LB@ |||| ||||||:||@LB@ CCUC CACCAAGGA@LB@3'-UUU...CGAUU CCAUG...UCG-5'@LB@ | |@LB@ 50 36@LB@@LB@@LB@Energy -11.15 kcal/mol@LB@Hybridization Energy -16.7846 kcal/mol@LB@Unfolding Energy - mRNA 2.49998 kcal/mol@LB@Unfolding Energy - sRNA 3.13428 kcal/mol@LB@@LB@Position - mRNA 281 -- 297@LB@Position - sRNA 37 -- 49@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 85 |
0.002796 |
0.1082 |
b4536 |
yobH |
-12.68 |
0.045962 |
237 -- 287 |
1 -- 38 |
uncharacterized protein |
|
_____________236__________________________________________________288\n_____________|____________________________________________________|\n5'-CAA...UAGCA_________AUAGGAUUAUUA__C____GA______C___U__A__GGA___AAAGA...CCG-3'\n______________CUGGUAUGG____________CU_AGCG___UAUGG_GUU_UG_UU___AGC\n______________||||||::|____________||_|||:___|||||_|||_||_||___|||\n______________GACCAUGUC____________GA_UCGU___AUACC_CAA_AC_AA___UCG\n3'-UUU...CCAAG____________________________AAA_________U__A__AAG___-5'\n_____________|___________________________________________________|\n_____________39__________________________________________________1\n |
239 -- 245 |
30 -- 36 |
-25.5821 kcal/mol |
8.3664 kcal/mol |
4.54019 kcal/mol |
236 288@LB@ | |@LB@5'-CAA...UAGCA AUAGGAUUAUUA C GA C U A GGA AAAGA...CCG-3'@LB@ CUGGUAUGG CU AGCG UAUGG GUU UG UU AGC@LB@ ||||||::| || |||: ||||| ||| || || |||@LB@ GACCAUGUC GA UCGU AUACC CAA AC AA UCG@LB@3'-UUU...CCAAG AAA U A AAG -5'@LB@ | |@LB@ 39 1@LB@@LB@@LB@Energy -12.68 kcal/mol@LB@Hybridization Energy -25.5821 kcal/mol@LB@Unfolding Energy - mRNA 8.3664 kcal/mol@LB@Unfolding Energy - sRNA 4.54019 kcal/mol@LB@@LB@Position - mRNA 237 -- 287@LB@Position - sRNA 1 -- 38@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 86 |
0.002806 |
0.1082 |
b1107 |
nagZ |
-13.13 |
0.035629 |
98 -- 119 |
25 -- 47 |
beta N-acetyl-glucosaminidase |
|
_____________97______________________120\n_____________|_______________________|\n5'-AUU...AAGCA_________GA_____C______GACAA...CGC-3'\n______________GGGUGGUUU___GUAC_GCUGGC\n______________:|||||||:___||||_|||:||\n______________UCCACCAAG___CAUG_CGAUCG\n3'-UUU...AUUCC_________GAC____U______UAAAA...UCG-5'\n_____________|_______________________|\n_____________48______________________24\n |
100 -- 106 |
39 -- 45 |
-29.3426 kcal/mol |
11.6523 kcal/mol |
4.55753 kcal/mol |
97 120@LB@ | |@LB@5'-AUU...AAGCA GA C GACAA...CGC-3'@LB@ GGGUGGUUU GUAC GCUGGC@LB@ :|||||||: |||| |||:||@LB@ UCCACCAAG CAUG CGAUCG@LB@3'-UUU...AUUCC GAC U UAAAA...UCG-5'@LB@ | |@LB@ 48 24@LB@@LB@@LB@Energy -13.13 kcal/mol@LB@Hybridization Energy -29.3426 kcal/mol@LB@Unfolding Energy - mRNA 11.6523 kcal/mol@LB@Unfolding Energy - sRNA 4.55753 kcal/mol@LB@@LB@Position - mRNA 98 -- 119@LB@Position - sRNA 25 -- 47@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 87 |
0.00283 |
0.1082 |
b0657 |
lnt |
-15.14 |
0.010132 |
15 -- 41 |
15 -- 46 |
apolipoprotein N-acyltransferase |
|
_____________14_______________________________42\n_____________|________________________________|\n5'-AAG...CUAUC______________AU__A_____________CAUCU...UCU-3'\n______________GGUGG__UCUGGUG__GC_GGCAUU___UGGG\n______________|||||__:|||||:__||_:|||||___||||\n______________CCACC__GGACCAU__CG_UCGUAA___ACCC\n3'-UUU...UUCCU_____AA_______GU__A______AAU____AAUAC...UCG-5'\n_____________|________________________________|\n_____________47_______________________________14\n |
20 -- 26 |
33 -- 39 |
-31.43 kcal/mol |
11.7158 kcal/mol |
4.57271 kcal/mol |
14 42@LB@ | |@LB@5'-AAG...CUAUC AU A CAUCU...UCU-3'@LB@ GGUGG UCUGGUG GC GGCAUU UGGG@LB@ ||||| :|||||: || :||||| ||||@LB@ CCACC GGACCAU CG UCGUAA ACCC@LB@3'-UUU...UUCCU AA GU A AAU AAUAC...UCG-5'@LB@ | |@LB@ 47 14@LB@@LB@@LB@Energy -15.14 kcal/mol@LB@Hybridization Energy -31.43 kcal/mol@LB@Unfolding Energy - mRNA 11.7158 kcal/mol@LB@Unfolding Energy - sRNA 4.57271 kcal/mol@LB@@LB@Position - mRNA 15 -- 41@LB@Position - sRNA 15 -- 46@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 88 |
0.002837 |
0.1082 |
b4377 |
yjjU |
-10.09 |
0.160689 |
120 -- 144 |
1 -- 33 |
putative patatin-like family phospholipase |
|
_____________119________________________________145\n_____________|__________________________________|\n5'-AGG...GUCCA____A___________C_________________GAAUA...GAC-3'\n______________GCGG_CUGGC_UUUUG_GG________UUUUAGC\n______________:|:|_||:||_||||:_||________|||:|||\n______________UGUC_GAUCG_AAAAU_CC________AAAGUCG\n3'-UUU...GACCA__________U_____A__CAAUACAA_______-5'\n_____________|_________________________________|\n_____________34________________________________1\n |
138 -- 144 |
1 -- 7 |
-20.956 kcal/mol |
9.37145 kcal/mol |
1.49313 kcal/mol |
119 145@LB@ | |@LB@5'-AGG...GUCCA A C GAAUA...GAC-3'@LB@ GCGG CUGGC UUUUG GG UUUUAGC@LB@ :|:| ||:|| ||||: || |||:|||@LB@ UGUC GAUCG AAAAU CC AAAGUCG@LB@3'-UUU...GACCA U A CAAUACAA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -20.956 kcal/mol@LB@Unfolding Energy - mRNA 9.37145 kcal/mol@LB@Unfolding Energy - sRNA 1.49313 kcal/mol@LB@@LB@Position - mRNA 120 -- 144@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 89 |
0.002865 |
0.1082 |
b2378 |
lpxP |
-9.84 |
0.178666 |
41 -- 76 |
9 -- 35 |
palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase |
|
_____________40____________________________________77\n_____________|_____________________________________|\n5'-AUU...AUAAA______AUACC_____C____CUCCUCGU________CCUGA...CUU-3'\n______________GUACAG_____GCAUU__AUG________GGUUAUGU\n______________||||||_____|||||__|||________||||||||\n______________CAUGUC_____CGUAA__UAC________CCAAUACA\n3'-UUU...AGGAC______GAU_______AA___________________AAAAGUCG-5'\n_____________|_____________________________________|\n_____________36____________________________________8\n |
70 -- 76 |
9 -- 15 |
-19.6308 kcal/mol |
8.30521 kcal/mol |
1.48708 kcal/mol |
40 77@LB@ | |@LB@5'-AUU...AUAAA AUACC C CUCCUCGU CCUGA...CUU-3'@LB@ GUACAG GCAUU AUG GGUUAUGU@LB@ |||||| ||||| ||| ||||||||@LB@ CAUGUC CGUAA UAC CCAAUACA@LB@3'-UUU...AGGAC GAU AA AAAAGUCG-5'@LB@ | |@LB@ 36 8@LB@@LB@@LB@Energy -9.84 kcal/mol@LB@Hybridization Energy -19.6308 kcal/mol@LB@Unfolding Energy - mRNA 8.30521 kcal/mol@LB@Unfolding Energy - sRNA 1.48708 kcal/mol@LB@@LB@Position - mRNA 41 -- 76@LB@Position - sRNA 9 -- 35@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 90 |
0.002979 |
0.1113 |
b3328 |
gspG |
-12.13 |
0.061461 |
284 -- 293 |
37 -- 46 |
pseudopilin cryptic general secretion pathway |
|
_____________283________294\n_____________|__________|\n5'-AAA...AGCCU__________AACCUAA-3'\n______________GGUGGUUCCU\n______________||||||||||\n______________CCACCAAGGA\n3'-UUU...UUCCU__________CCAUG...UCG-5'\n_____________|__________|\n_____________47_________36\n |
287 -- 293 |
37 -- 43 |
-18.4741 kcal/mol |
3.21142 kcal/mol |
3.13317 kcal/mol |
283 294@LB@ | |@LB@5'-AAA...AGCCU AACCUAA-3'@LB@ GGUGGUUCCU@LB@ ||||||||||@LB@ CCACCAAGGA@LB@3'-UUU...UUCCU CCAUG...UCG-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -18.4741 kcal/mol@LB@Unfolding Energy - mRNA 3.21142 kcal/mol@LB@Unfolding Energy - sRNA 3.13317 kcal/mol@LB@@LB@Position - mRNA 284 -- 293@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 37 -- 43@LB@ |
