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CopraRNA 5172788

Input and runtime details for job 5172788 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 5172788 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:22:27 CET 2018
?CopraRNA Started@ Fri Feb 16 15:22:50 CET 2018
?CopraRNA Finished & Post-Processing@ Fri Feb 16 20:35:14 CET 2018
?Post-Processing Finished@ Fri Feb 16 20:35:22 CET 2018
?Job Completed@ Fri Feb 16 20:35:53 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=5172788&toolName=CopraRNA ( 30 days expiry )

Description of the job

CyaR

Output download complete results [zip]

Downloadable files

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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
1 0 0 b3824 rhtB -9.47 0.207720 26 -- 71 1 -- 43 homoserine homoserine lactone and S-methyl-methionine efflux pump  
2 1.307e-08 2.196e-05 b1825 yebO -18.49 0.000616 254 -- 287 16 -- 49 putative inner membrane protein  
3 2.088e-07 0.000234 b2077 iceT -18.53 0.000593 226 -- 254 1 -- 30 putative citrate/iron-citrate/zinc-citrate efflux transporter  
4 1.432e-06 0.001203 b4547 ypfN -14.60 0.014593 223 -- 236 33 -- 46 putative membrane protein UPF0370 family  
5 6.68e-06 0.00395 b1918 yecS -16.73 0.003069 259 -- 299 1 -- 36 ABC family putative inner membrane permease  
6 7.051e-06 0.00395 b1213 ychQ -11.22 0.096653 74 -- 98 15 -- 40 SIRB family inner membrane protein  
7 1.492e-05 0.007162 b0903 pflB -20.16 0.000088 81 -- 115 14 -- 49 formate C-acetyltransferase 1 anaerobic; pyruvate formate-lyase 1  
8 1.749e-05 0.007346 b3294 rplQ -17.07 0.002316 5 -- 20 29 -- 46 50S ribosomal subunit protein L17  
9 2.519e-05 0.009407 b0435 bolA -15.32 0.008970 138 -- 163 15 -- 36 stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC  
10 2.916e-05 0.0098 b1890 motA -14.10 0.019983 224 -- 242 28 -- 46 proton conductor component of flagella motor  
11 3.883e-05 0.01168 b4074 nrfE -17.71 0.001322 131 -- 144 35 -- 48 heme lyase (NrfEFG) for insertion of heme into c552 subunit NrfE  
12 4.171e-05 0.01168 b0814 ompX -14.35 0.017131 192 -- 226 1 -- 48 outer membrane protein X  
13 6.02e-05 0.01556 b1686 menI -18.50 0.000608 260 -- 300 10 -- 49 1 4-dihydroxy-2-naphthoyl-CoA hydrolase  
14 9.306e-05 0.02121 b1205 ychH -11.92 0.068307 242 -- 277 15 -- 49 DUF2583 family putative inner membrane protein  
15 0.0001004 0.02121 b2416 ptsI -14.97 0.011388 179 -- 212 1 -- 32 PEP-protein phosphotransferase of PTS system (enzyme I)  
16 0.000101 0.02121 b3428 glgP -10.27 0.148738 91 -- 131 1 -- 46 glycogen phosphorylase  
17 0.0001135 0.02244 b3531 bcsZ -11.80 0.072553 125 -- 136 14 -- 30 endo-1 4-D-glucanase  
18 0.0001426 0.02662 b1824 yobF -14.57 0.014857 186 -- 218 1 -- 36 DUF2527 family heat-induced protein  
19 0.000151 0.02671 b2142 yohK -18.84 0.000427 90 -- 130 4 -- 49 LrgB family inner membrane protein  
20 0.0001678 0.0282 b2056 wcaD -17.66 0.001373 77 -- 104 24 -- 48 putative colanic acid polymerase  
21 0.0001799 0.02879 b0107 hofB -20.93 0.000028 267 -- 289 25 -- 48 T2SE secretion family protein; P-loop ATPase superfamily protein  
22 0.0002072 0.03165 b2341 fadJ -8.08 0.343546 182 -- 217 1 -- 44 enoyl-CoA hydratase/epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase  
23 0.0002818 0.04118 b1813 nudL -13.86 0.023273 1 -- 17 22 -- 39 putative CoA pyrophosphohydrolase weak 3-phosphohydroxypyruvate phosphatase  
24 0.0003458 0.04652 b2308 hisQ -16.60 0.003436 190 -- 219 2 -- 36 histidine ABC transporter permease  
25 0.0003503 0.04652 b3233 yhcB -13.45 0.029595 190 -- 239 1 -- 50 DUF1043 family inner membrane-anchored protein  
26 0.0003609 0.04652 b0197 metQ -15.58 0.007466 80 -- 120 1 -- 43 DL-methionine transporter subunit  
27 0.0003737 0.04652 b2828 lgt -19.83 0.000134 254 -- 300 13 -- 50 phosphatidylglycerol-prolipoprotein diacylglyceryl transferase  
28 0.000409 0.0491 b1688 ydiK -9.69 0.189548 195 -- 219 1 -- 33 UPF0118 family inner membrane protein  
29 0.0004753 0.05348 b3412 bioH -14.38 0.016792 146 -- 163 23 -- 40 pimeloyl-ACP methyl ester carboxylesterase  
30 0.0004774 0.05348 b2148 mglC -7.69 0.389595 275 -- 281 24 -- 30 methyl-galactoside transporter subunit  
31 0.0004941 0.05357 b1272 sohB -11.06 0.104388 188 -- 235 1 -- 51 inner membrane protein S49 peptidase family protein  
32 0.0005297 0.05563 b3456 livM -14.95 0.011565 245 -- 274 15 -- 42 branched-chain amino acid ABC transporter permease  
33 0.0006117 0.0623 b1795 yeaQ -12.41 0.053010 276 -- 283 42 -- 49 UPF0410 family protein  
34 0.0006341 0.06268 b3312 rpmC -15.21 0.009642 105 -- 128 25 -- 49 50S ribosomal subunit protein L29  
35 0.0006725 0.06313 b3455 livG -12.92 0.040223 97 -- 112 32 -- 46 branched-chain amino acid ABC transporter ATPase  
36 0.0006761 0.06313 b0759 galE -8.98 0.250354 205 -- 236 22 -- 48 UDP-galactose-4-epimerase  
37 0.0006972 0.06333 b1594 mlc -9.54 0.201866 190 -- 226 24 -- 50 glucosamine anaerobic growth regulon transcriptional repressor; autorepressor  
38 0.0007298 0.06455 b3196 yrbG -13.22 0.033821 90 -- 115 1 -- 31 putative calcium/sodium:proton antiporter  
39 0.0008004 0.06626 b1533 eamA -12.23 0.058236 233 -- 264 16 -- 49 cysteine and O-acetyl-L-serine efflux system  
40 0.0008246 0.06626 b4019 metH -11.44 0.086775 244 -- 271 15 -- 42 homocysteine-N5-methyltetrahydrofolate transmethylase B12-dependent  
41 0.0008276 0.06626 b1218 chaC -8.54 0.293650 119 -- 139 24 -- 45 cation transport regulator  
42 0.000828 0.06626 b2129 yehX -13.83 0.023625 55 -- 85 15 -- 47 putative ABC transporter ATPase  
43 0.0008959 0.07003 b3068 mug -12.52 0.050096 232 -- 248 1 -- 17 G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase  
44 0.0009392 0.07174 b3453 ugpB -12.21 0.059079 239 -- 268 1 -- 32 sn-glycerol-3-phosphate ABC transporter periplasmic binding protein  
45 0.001037 0.07744 b0857 potI -11.49 0.084883 37 -- 88 3 -- 46 putrescine ABC transporter permease  
46 0.00106 0.07744 b3234 degQ -13.26 0.033170 226 -- 262 1 -- 35 serine endoprotease periplasmic  
47 0.001093 0.07744 b0128 yadH -6.67 0.521304 272 -- 286 25 -- 36 putative ABC transporter permease  
48 0.001117 0.07744 b2829 ptsP -13.12 0.035810 22 -- 37 14 -- 33 PEP-protein phosphotransferase enzyme I; GAF domain containing protein  
49 0.001147 0.07744 b3039 ygiD -13.27 0.032900 280 -- 298 15 -- 33 4 5- DOPA-extradiol-dioxygenase  
50 0.001175 0.07744 b3543 dppB -14.13 0.019609 196 -- 210 1 -- 17 dipeptide/heme ABC transporter permease  
51 0.001198 0.07744 b2174 lpxT -10.53 0.132559 260 -- 270 31 -- 41 lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase  
52 0.001222 0.07744 b2217 rcsB -14.74 0.013297 68 -- 91 9 -- 38 response regulator in two-component regulatory system with RcsC and YojN  
53 0.001234 0.07744 b0884 infA -13.12 0.035785 57 -- 86 2 -- 40 translation initiation factor IF-1  
54 0.001244 0.07744 b1874 cutC -11.77 0.073856 3 -- 15 22 -- 35 copper homeostasis protein  
55 0.001331 0.08097 b2742 nlpD -12.02 0.064935 253 -- 272 24 -- 44 activator of AmiC murein hydrolase activity lipoprotein  
56 0.001349 0.08097 b0287 yagU -10.29 0.147287 182 -- 196 14 -- 37 DUF1440 family inner membrane acid resistance protein  
57 0.001403 0.08147 b0948 rlmL -12.46 0.051711 286 -- 300 33 -- 47 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases SAM-dependent  
58 0.001429 0.08147 b0698 kdpA -14.04 0.020858 136 -- 172 7 -- 35 potassium translocating ATPase subunit A  
59 0.00143 0.08147 b0848 ybjM -6.77 0.507403 86 -- 118 1 -- 33 inner membrane protein  
60 0.001479 0.08283 b1886 tar -8.65 0.283085 258 -- 290 4 -- 38 methyl-accepting chemotaxis protein II  
61 0.001594 0.08781 b1905 ftnA -13.68 0.025904 280 -- 298 27 -- 44 ferritin iron storage protein (cytoplasmic)  
62 0.00164 0.08891 b0922 mukF -17.51 0.001582 1 -- 30 14 -- 38 chromosome condensin MukBEF kleisin-like subunit binds calcium  
63 0.00172 0.09016 b1209 lolB -15.80 0.006355 144 -- 167 11 -- 36 lipoprotein localization factor  
64 0.001739 0.09016 b4463 ygcU -11.99 0.066010 140 -- 150 36 -- 46 putative FAD-linked oxidoreductase  
65 0.001744 0.09016 b3541 dppD -12.71 0.044996 114 -- 148 14 -- 40 dipeptide/heme ABC transporter ATPas  
66 0.001771 0.09017 b0924 mukB -12.08 0.063147 4 -- 24 1 -- 22 chromosome condensin MukBEF ATPase and DNA-binding subunit  
67 0.00183 0.09081 b1607 ydgC -12.69 0.045650 228 -- 262 1 -- 36 GlpM family inner membrane protein  
68 0.001845 0.09081 b2957 ansB -14.03 0.020893 243 -- 268 22 -- 43 periplasmic L-asparaginase 2  
69 0.001909 0.09081 b1830 prc -10.38 0.141777 185 -- 217 2 -- 49 carboxy-terminal protease for penicillin-binding protein 3  
70 0.00193 0.09081 b1823 cspC -11.95 0.067388 30 -- 62 1 -- 36 stress protein member of the CspA-family  
71 0.001933 0.09081 b2044 wcaL -10.40 0.140507 12 -- 21 24 -- 33 putative glycosyl transferase  
72 0.001945 0.09081 b3024 ygiW -9.51 0.204072 108 -- 126 18 -- 35 hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein  
73 0.002141 0.09621 b0740 tolB -11.17 0.098836 117 -- 150 8 -- 46 periplasmic protein  
74 0.00218 0.09621 b2722 hycD -16.42 0.003958 87 -- 124 10 -- 46 hydrogenase 3 membrane subunit  
75 0.002192 0.09621 b3950 frwB -15.16 0.010002 30 -- 54 11 -- 46 putative enzyme IIB component of PTS b3899
76 0.002251 0.09621 b0020 nhaR -13.73 0.025158 90 -- 112 25 -- 46 transcriptional activator of nhaA  
77 0.002255 0.09621 b3052 hldE -16.16 0.004835 103 -- 144 10 -- 48 heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase  
78 0.002256 0.09621 b0509 glxR -14.00 0.021344 191 -- 236 14 -- 48 tartronate semialdehyde reductase NADH-dependent b3882 b3125
79 0.002261 0.09621 b2556 glrK -15.72 0.006745 240 -- 258 20 -- 38 sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR  
80 0.002475 0.104 b2468 aegA -11.19 0.098238 223 -- 245 11 -- 33 putative oxidoreductase FeS binding subunit/NAD/FAD-binding subunit  
81 0.002689 0.1082 b1498 ydeN -15.88 0.005981 253 -- 275 21 -- 44 putative Ser-type periplasmic non-aryl sulfatase b3678 b3801
82 0.002694 0.1082 b2474 tmcA -11.34 0.091143 115 -- 147 1 -- 34 elongator methionine tRNA (ac4C34) acetyltransferase  
83 0.002775 0.1082 b2049 cpsB -6.85 0.497101 286 -- 298 17 -- 31 mannose-1-phosphate guanyltransferase  
84 0.00278 0.1082 b1418 cybB -11.15 0.099871 281 -- 297 37 -- 49 cytochrome b561  
85 0.002796 0.1082 b4536 yobH -12.68 0.045962 237 -- 287 1 -- 38 uncharacterized protein  
86 0.002806 0.1082 b1107 nagZ -13.13 0.035629 98 -- 119 25 -- 47 beta N-acetyl-glucosaminidase  
87 0.00283 0.1082 b0657 lnt -15.14 0.010132 15 -- 41 15 -- 46 apolipoprotein N-acyltransferase  
88 0.002837 0.1082 b4377 yjjU -10.09 0.160689 120 -- 144 1 -- 33 putative patatin-like family phospholipase  
89 0.002865 0.1082 b2378 lpxP -9.84 0.178666 41 -- 76 9 -- 35 palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase  
90 0.002979 0.1113 b3328 gspG -12.13 0.061461 284 -- 293 37 -- 46 pseudopilin cryptic general secretion pathway  
91 0.003099 0.1126 b2343 yfcZ -10.72 0.122030 27 -- 34 42 -- 49 UPF0381 family protein  
92 0.00311 0.1126 b1042 csgA -13.02 0.037954 257 -- 281 29 -- 49 curlin subunit amyloid curli fibers cryptic  
93 0.003115 0.1126 b2595 bamD -5.90 0.625252 19 -- 35 31 -- 48 BamABCDE complex OM biogenesis lipoprotein  
94 0.003268 0.1162 b2687 luxS -10.18 0.155002 189 -- 196 42 -- 49 S-ribosylhomocysteine lyase  
95 0.003283 0.1162 b3298 rpsM -13.37 0.031144 190 -- 221 22 -- 50 30S ribosomal subunit protein S13  
96 0.003358 0.117 b3367 nirC -13.97 0.021706 56 -- 81 6 -- 37 nitrite transporter  
97 0.003376 0.117 b2145 yeiS -12.83 0.042234 207 -- 237 4 -- 35 DUF2542 family protein  
98 0.003416 0.1172 b2024 hisA -13.42 0.030138 147 -- 168 25 -- 49 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase  
99 0.003591 0.1219 b0533 sfmH -7.90 0.364135 113 -- 140 1 -- 34 FimA homolog function unknown b3145 b0941
100 0.003656 0.1229 b2287 nuoB -12.04 0.064387 31 -- 70 8 -- 47 NADH:ubiquinone oxidoreductase chain B  
101 0.003756 0.123 b2972 pppA -13.47 0.029286 211 -- 222 1 -- 12 bifunctional prepilin leader peptidase/ methylase  
102 0.003761 0.123 b0928 aspC -10.71 0.122473 105 -- 118 20 -- 33 aspartate aminotransferase PLP-dependent  
103 0.00377 0.123 b2922 yggE -10.91 0.111523 45 -- 69 24 -- 45 oxidative stress defense protein  
104 0.003825 0.1236 b0081 mraZ -12.90 0.040525 169 -- 210 15 -- 49 RsmH methytransferase inhibitor  
105 0.003867 0.1238 b0716 ybgO -11.28 0.093728 281 -- 296 25 -- 40 putative fimbrial protein b3048
106 0.003955 0.1254 b1767 ansA -7.74 0.383564 250 -- 272 11 -- 34 cytoplasmic L-asparaginase 1  
107 0.004137 0.1296 b2164 psuT -12.74 0.044381 225 -- 254 21 -- 50 putative nucleoside transporter b2161
108 0.004185 0.1296 b2158 yeiH -13.47 0.029300 232 -- 260 12 -- 35 UPF0324 family inner membrane protein  
109 0.004204 0.1296 b1384 feaR -11.47 0.085662 210 -- 231 1 -- 26 transcriptional activator for tynA and feaB  
110 0.004262 0.1302 b1871 cmoB -11.44 0.086999 165 -- 182 22 -- 44 tRNA (cmo5U34)-carboxymethyltransferase carboxy-SAM-dependent  
111 0.004429 0.1334 b0141 yadN -9.15 0.234499 216 -- 249 16 -- 43 putative fimbrial-like adhesin protein  
112 0.004445 0.1334 b0132 yadD -7.85 0.370183 131 -- 161 16 -- 48 transposase_31 family protein b3411 b2244 b2305
113 0.004738 0.1404 b3197 kdsD -14.34 0.017174 210 -- 240 1 -- 35 D-arabinose 5-phosphate isomerase  
114 0.004808 0.1404 b2372 yfdV -9.14 0.236047 240 -- 266 1 -- 35 putative transporter  
115 0.004814 0.1404 b2743 pcm -10.63 0.126788 157 -- 183 29 -- 48 L-isoaspartate protein carboxylmethyltransferase type II  
116 0.004845 0.1404 b2277 nuoM -9.49 0.205960 1 -- 40 8 -- 43 NADH:ubiquinone oxidoreductase membrane subunit M  
117 0.004938 0.1407 b2560 pgpC -11.09 0.102961 189 -- 233 4 -- 51 phosphatidylglycerophosphatase C membrane bound  
118 0.00496 0.1407 b1128 roxA -15.27 0.009267 80 -- 105 22 -- 49 50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase  
119 0.005024 0.1407 b2342 fadI -9.59 0.197573 199 -- 214 6 -- 21 beta-ketoacyl-CoA thiolase anaerobic subunit  
120 0.005024 0.1407 b2564 pdxJ -10.23 0.151404 275 -- 296 21 -- 43 pyridoxine 5'-phosphate synthase  
121 0.005123 0.1413 b1735 chbR -8.25 0.324466 38 -- 46 30 -- 38 repressor of chb operon for N N'-diacetylchitobiose utilization  
122 0.005134 0.1413 b0437 clpP -11.97 0.066798 162 -- 180 3 -- 36 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases  
123 0.005173 0.1413 b0839 dacC -12.36 0.054489 29 -- 38 24 -- 33 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a  
124 0.00526 0.1416 b3170 rimP -10.72 0.121991 191 -- 217 24 -- 49 ribosome maturation factor for 30S subunits  
125 0.005266 0.1416 b0957 ompA -12.88 0.041122 280 -- 293 25 -- 39 outer membrane protein A (3a;II*;G;d)  
126 0.00537 0.142 b3789 rffH -9.20 0.230539 124 -- 140 30 -- 46 glucose-1-phosphate thymidylyltransferase  
127 0.005388 0.142 b2721 hycE -10.66 0.125013 137 -- 158 1 -- 36 hydrogenase 3 large subunit  
128 0.005434 0.142 b1628 rsxB -10.87 0.114026 241 -- 273 10 -- 44 SoxR iron-sulfur cluster reduction factor component; putative iron-sulfur protein  
129 0.005449 0.142 b2502 ppx -11.35 0.090652 145 -- 164 17 -- 36 exopolyphosphatase  
130 0.005552 0.1429 b1622 malY -10.60 0.128513 216 -- 278 1 -- 51 PLP-dependent beta-cystathionase and maltose regulon regulator  
131 0.005571 0.1429 b3102 yqjG -9.67 0.191738 57 -- 77 24 -- 46 putative S-transferase  
132 0.005751 0.146 b2294 yfbU -8.39 0.309344 3 -- 25 24 -- 50 UPF0304 family protein  
133 0.005817 0.146 b3461 rpoH -7.67 0.391921 235 -- 243 24 -- 32 RNA polymerase sigma 32 (sigma H) factor  
134 0.005847 0.146 b0065 yabI -9.48 0.206647 266 -- 290 24 -- 46 DedA family inner membrane protein  
135 0.005891 0.146 b3009 yghB -12.71 0.045213 257 -- 299 7 -- 46 general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter  
136 0.005909 0.146 b1291 sapD -11.34 0.091029 118 -- 151 12 -- 36 antimicrobial peptide ABC transporter ATPase  
137 0.006165 0.1512 b1024 pgaA -6.60 0.530802 267 -- 274 1 -- 8 biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1 6-N-acetyl-D-glucosamine export protein  
138 0.006247 0.1521 b1063 yceB -7.15 0.457702 84 -- 117 1 -- 32 lipoprotein DUF1439 family  
139 0.00635 0.1535 b0800 ybiB -9.74 0.186276 120 -- 129 27 -- 36 putative family 3 glycosyltransferase  
140 0.006493 0.1559 b1916 sdiA -12.48 0.051059 182 -- 224 1 -- 50 quorum-sensing transcriptional activator  
141 0.006623 0.1579 b1992 cobS -16.13 0.004945 167 -- 192 24 -- 49 cobalamin synthase  
142 0.006672 0.1579 b3168 infB -12.04 0.064271 249 -- 267 29 -- 45 translation initiation factor IF-2  
143 0.00681 0.158 b2418 pdxK -15.34 0.008827 271 -- 292 15 -- 47 pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase  
144 0.006813 0.158 b0111 ampE -6.38 0.559697 294 -- 300 1 -- 7 ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation  
145 0.006858 0.158 b2079 baeR -14.59 0.014658 61 -- 107 1 -- 46 response regulator in two-component regulatory system with BaeS  
146 0.006865 0.158 b2701 mltB -8.70 0.277719 77 -- 106 9 -- 36 membrane-bound lytic murein transglycosylase B  
147 0.006963 0.1592 b0723 sdhA -11.23 0.096056 156 -- 186 10 -- 46 succinate dehydrogenase flavoprotein subunit  
148 0.00721 0.1633 b0643 ybeL -14.84 0.012433 12 -- 39 23 -- 48 DUF1451 family protein  
149 0.00724 0.1633 b3494 uspB -9.24 0.227320 190 -- 228 15 -- 51 universal stress (ethanol tolerance) protein B  
150 0.00729 0.1634 b3184 yhbE -11.29 0.093352 190 -- 235 1 -- 50 EamA family inner membrane putative transporter  
151 0.007423 0.1652 b2895 fldB -9.53 0.202764 191 -- 224 1 -- 31 flavodoxin 2  
152 0.007594 0.1679 b3992 thiF -12.60 0.047865 3 -- 22 24 -- 47 adenylyltransferase modifies ThiS C-terminus  
153 0.00769 0.1686 b3292 zntR -12.84 0.042049 212 -- 231 16 -- 37 zntA gene transcriptional activator  
154 0.007726 0.1686 b4203 rplI -9.34 0.218324 285 -- 297 29 -- 41 50S ribosomal subunit protein L9  
155 0.007835 0.1694 b2239 glpQ -10.90 0.112133 59 -- 106 1 -- 45 periplasmic glycerophosphodiester phosphodiesterase  
156 0.007969 0.1694 b4025 pgi -9.69 0.190093 4 -- 41 3 -- 36 glucosephosphate isomerase  
157 0.007972 0.1694 b4350 hsdR -17.86 0.001148 15 -- 50 1 -- 35 endonuclease R Type I restriction enzyme  
158 0.007987 0.1694 b0756 galM -12.34 0.055034 97 -- 122 25 -- 48 aldose 1-epimerase; type-1 mutarotase; galactose mutarotase  
159 0.008045 0.1694 b1780 yeaD -12.23 0.058242 44 -- 57 32 -- 44 D-hexose-6-phosphate epimerase-like protein  
160 0.008086 0.1694 b3350 kefB -10.41 0.139805 251 -- 273 23 -- 46 potassium:proton antiporter  
161 0.008114 0.1694 b3656 yicI -11.96 0.067144 124 -- 143 14 -- 37 putative alpha-glucosidase b3878
162 0.008285 0.1719 b3671 ilvB -15.19 0.009769 264 -- 284 22 -- 41 acetolactate synthase 2 large subunit  
163 0.008426 0.1737 b2780 pyrG -11.06 0.104451 98 -- 140 14 -- 51 CTP synthetase  
164 0.008548 0.1748 b0461 tomB -9.85 0.177976 15 -- 39 9 -- 30 Hha toxicity attenuator; conjugation-related protein  
165 0.008583 0.1748 b4075 nrfF -7.99 0.354712 71 -- 77 63 -- 69 heme lyase (NrfEFG) for insertion of heme into c552 subunit NrfF  
166 0.008687 0.1759 b3210 arcB -6.83 0.499810 260 -- 284 24 -- 46 aerobic respiration control sensor histidine protein kinase cognate to two-component response regulators ArcA and RssB  
167 0.00885 0.1781 b0241 phoE -12.37 0.054121 1 -- 29 1 -- 31 outer membrane phosphoporin protein E b0929 b2215 b1377
168 0.00897 0.1795 b3139 agaC -13.68 0.025868 233 -- 273 1 -- 39 N-acetylgalactosamine-specific enzyme IIC component of PTS  
169 0.009174 0.1803 b1467 narY -12.55 0.049142 183 -- 194 25 -- 36 nitrate reductase 2 (NRZ) beta subunit  
170 0.009245 0.1803 b3205 yhbJ -9.78 0.183109 251 -- 276 13 -- 39 adaptor protein for GlmZ/GlmY sRNA decay glucosamine-6-phosphate-regulated; NTPase  
171 0.00925 0.1803 b3832 rmuC -14.29 0.017807 191 -- 257 1 -- 50 DNA recombination protein  
172 0.009254 0.1803 b1676 pykF -8.82 0.265733 268 -- 283 23 -- 40 pyruvate kinase I  
173 0.009278 0.1803 b3495 uspA -10.68 0.124344 253 -- 279 16 -- 40 universal stress global response regulator  
174 0.009477 0.1831 b3186 rplU -11.27 0.094314 2 -- 27 9 -- 34 50S ribosomal subunit protein L21  
175 0.009651 0.1848 b2016 yeeZ -14.25 0.018278 222 -- 265 1 -- 50 putative epimerase  
176 0.009679 0.1848 b4348 hsdS -12.85 0.041875 168 -- 192 15 -- 42 specificity determinant for hsdM and hsdR  
177 0.009845 0.1869 b3241 aaeA -6.34 0.565531 229 -- 235 29 -- 35 p-hydroxybenzoic acid efflux system component  
178 0.009929 0.1875 b1278 pgpB -11.49 0.084643 145 -- 171 10 -- 41 phosphatidylglycerophosphatase B  
179 0.01003 0.1882 b0619 citA -9.15 0.235039 224 -- 237 20 -- 33 sensory histidine kinase in two-component regulatory system with CitB  
180 0.01039 0.1919 b1778 msrB -9.69 0.189810 88 -- 95 29 -- 36 methionine sulfoxide reductase B  
181 0.0104 0.1919 b2106 rcnA -12.10 0.062308 133 -- 155 15 -- 50 membrane protein conferring nickel and cobalt resistance  
182 0.01043 0.1919 b1235 rssB -12.59 0.048266 47 -- 57 25 -- 36 PcnB-degradosome interaction factor; response regulator  
183 0.01048 0.1919 b1250 kch -17.60 0.001460 228 -- 258 1 -- 33 voltage-gated potassium channel  
184 0.01055 0.1919 b2175 mepS -11.10 0.102353 43 -- 84 9 -- 46 murein DD-endopeptidase space-maker hydrolase mutational suppressor of prc thermosensitivity outer membrane lipoprotein weak murein LD-carboxypeptidase  
185 0.01059 0.1919 b3856 mobB -14.40 0.016564 123 -- 150 1 -- 31 molybdopterin-guanine dinucleotide biosynthesis protein B  
186 0.01069 0.1919 b1614 ydgA -8.85 0.262719 182 -- 191 16 -- 25 DUF945 family protein  
187 0.01074 0.1919 b2536 hcaT -7.74 0.383266 275 -- 291 25 -- 41 putative 3-phenylpropionic transporter  
188 0.01085 0.1919 b1878 flhE -11.23 0.096033 252 -- 283 16 -- 51 proton seal during flagellar secretion  
189 0.01085 0.1919 b3606 trmL -8.64 0.283903 120 -- 126 63 -- 69 tRNA Leu mC34 mU34 2'-O-methyltransferase SAM-dependent  
190 0.0109 0.1919 b2749 ygbE -11.00 0.107048 99 -- 107 29 -- 37 DUF3561 family inner membrane protein  
191 0.01094 0.1919 b3554 yiaF -11.44 0.087025 256 -- 281 6 -- 37 barrier effect co-colonization resistance factor; DUF3053 family lipoprotein  
192 0.01101 0.1919 b2478 dapA -6.78 0.505920 248 -- 269 25 -- 47 dihydrodipicolinate synthase  
193 0.01107 0.1919 b3532 bcsB -10.24 0.150531 226 -- 241 15 -- 35 regulator of cellulose synthase cyclic di-GMP binding  
194 0.01107 0.1919 b3288 fmt -14.89 0.012048 76 -- 114 11 -- 48 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase  
195 0.01134 0.1946 b0633 rlpA -8.12 0.339483 43 -- 55 25 -- 37 septal ring protein suppressor of prc minor lipoprotein  
196 0.01135 0.1946 b1515 lsrD -9.63 0.194390 56 -- 86 16 -- 44 autoinducer 2 import system permease protein  
197 0.01153 0.1967 b0610 rnk -10.49 0.135367 130 -- 162 7 -- 39 regulator of nucleoside diphosphate kinase  
198 0.01161 0.1971 b2712 hypF -10.23 0.151482 281 -- 290 24 -- 33 carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein  
199 0.0118 0.1975 b0077 ilvI -11.98 0.066447 6 -- 27 1 -- 30 acetolactate synthase 3 large subunit  
200 0.01185 0.1975 b0025 ribF -6.09 0.598433 35 -- 41 28 -- 34 bifunctional riboflavin kinase/FAD synthetase  

Details of Selected Interaction Download Interaction Details 

mRNA

sRNA


		

		

		

		
		

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

		
 
		
		

		
		

		
		
		
		
Evolutionary conservation of mRNA targets
			(alignment generated with
			Jalview)

		
		
		
Evolutionary conservation of sRNA
			(alignment generated with
			Jalview)

		
		
		

		
	

	
	
	

	
	
	




			 
	





	
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Results are computed with CopraRNA version 2.1.2



		 
	

			





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