18 |
0.003137 |
0.5385 |
b1824 |
yobF |
-13.30 |
0.027752 |
169 -- 188 |
14 -- 35 |
DUF2527 family heat-induced protein |
|
_____________168____________________189\n_____________|______________________|\n5'-GCC...UAACA________________C_____ACAGU...UGU-3'\n______________GAUUUC__GGGUUAAA_GAGGU\n______________||:|||__||||||||_|||||\n______________CUGAAG__CCCAAUUU_CUCCA\n3'-CGC...CGUCA______UU________U_____CGGCG...AAG-5'\n_____________|______________________|\n_____________36_____________________13\n |
176 -- 182 |
20 -- 26 |
-23.4961 kcal/mol |
6.86312 kcal/mol |
3.33183 kcal/mol |
168 189@LB@ | |@LB@5'-GCC...UAACA C ACAGU...UGU-3'@LB@ GAUUUC GGGUUAAA GAGGU@LB@ ||:||| |||||||| |||||@LB@ CUGAAG CCCAAUUU CUCCA@LB@3'-CGC...CGUCA UU U CGGCG...AAG-5'@LB@ | |@LB@ 36 13@LB@@LB@@LB@Energy -13.30 kcal/mol@LB@Hybridization Energy -23.4961 kcal/mol@LB@Unfolding Energy - mRNA 6.86312 kcal/mol@LB@Unfolding Energy - sRNA 3.33183 kcal/mol@LB@@LB@Position - mRNA 169 -- 188@LB@Position - sRNA 14 -- 35@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 20 -- 26@LB@ |
130 |
0.02238 |
0.5385 |
b4365 |
yjjQ |
-17.31 |
0.005324 |
260 -- 274 |
14 -- 28 |
putative transcriptional regulator |
|
_____________259_____________275\n_____________|_______________|\n5'-AGG...CAAGC_______________CAUGA...AUG-3'\n______________AGGGUUAAAAGAGGU\n______________|||||||||||||||\n______________UCCCAAUUUUCUCCA\n3'-CGC...GAAGU_______________CGGCG...AAG-5'\n_____________|_______________|\n_____________29______________13\n |
268 -- 274 |
14 -- 20 |
-23.2971 kcal/mol |
2.73817 kcal/mol |
3.24497 kcal/mol |
259 275@LB@ | |@LB@5'-AGG...CAAGC CAUGA...AUG-3'@LB@ AGGGUUAAAAGAGGU@LB@ |||||||||||||||@LB@ UCCCAAUUUUCUCCA@LB@3'-CGC...GAAGU CGGCG...AAG-5'@LB@ | |@LB@ 29 13@LB@@LB@@LB@Energy -17.31 kcal/mol@LB@Hybridization Energy -23.2971 kcal/mol@LB@Unfolding Energy - mRNA 2.73817 kcal/mol@LB@Unfolding Energy - sRNA 3.24497 kcal/mol@LB@@LB@Position - mRNA 260 -- 274@LB@Position - sRNA 14 -- 28@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 14 -- 20@LB@ |
142 |
0.02338 |
0.5385 |
b1126 |
potA |
-10.56 |
0.084569 |
277 -- 295 |
14 -- 34 |
spermidine/putrescine ABC transporter ATPase |
|
_____________276___________________296\n_____________|_____________________|\n5'-CAA...CAAAU_______U_____________CAUUC-3'\n______________GCUUUGA_GGU__AAAGAGGU\n______________:|||::|_|||__||||||||\n______________UGAAGUU_CCA__UUUCUCCA\n3'-CGC...GUCAC_______C___AU________CGGCG...AAG-5'\n_____________|_____________________|\n_____________35____________________13\n |
289 -- 295 |
14 -- 20 |
-18.1028 kcal/mol |
4.21038 kcal/mol |
3.33169 kcal/mol |
276 296@LB@ | |@LB@5'-CAA...CAAAU U CAUUC-3'@LB@ GCUUUGA GGU AAAGAGGU@LB@ :|||::| ||| ||||||||@LB@ UGAAGUU CCA UUUCUCCA@LB@3'-CGC...GUCAC C AU CGGCG...AAG-5'@LB@ | |@LB@ 35 13@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -18.1028 kcal/mol@LB@Unfolding Energy - mRNA 4.21038 kcal/mol@LB@Unfolding Energy - sRNA 3.33169 kcal/mol@LB@@LB@Position - mRNA 277 -- 295@LB@Position - sRNA 14 -- 34@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 14 -- 20@LB@ |
185 |
0.03283 |
0.5559 |
b1937 |
fliE |
-12.05 |
0.046361 |
209 -- 229 |
14 -- 35 |
flagellar basal-body component |
|
_____________208____________________230\n_____________|______________________|\n5'-CUG...UCAGC___A_______AUU________UAUCA...GUU-3'\n______________GAU__CAGGGG___GAAGGGGU\n______________||:__||:|||___:|||:|||\n______________CUG__GUUCCC___UUUCUCCA\n3'-CGC...CGUCA___AA______AAU________CGGCG...AAG-5'\n_____________|______________________|\n_____________36_____________________13\n |
223 -- 229 |
14 -- 20 |
-20.5154 kcal/mol |
5.13678 kcal/mol |
3.33183 kcal/mol |
208 230@LB@ | |@LB@5'-CUG...UCAGC A AUU UAUCA...GUU-3'@LB@ GAU CAGGGG GAAGGGGU@LB@ ||: ||:||| :|||:|||@LB@ CUG GUUCCC UUUCUCCA@LB@3'-CGC...CGUCA AA AAU CGGCG...AAG-5'@LB@ | |@LB@ 36 13@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -20.5154 kcal/mol@LB@Unfolding Energy - mRNA 5.13678 kcal/mol@LB@Unfolding Energy - sRNA 3.33183 kcal/mol@LB@@LB@Position - mRNA 209 -- 229@LB@Position - sRNA 14 -- 35@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 14 -- 20@LB@ |
26 |
0.00484 |
0.5385 |
b3033 |
yqiB |
-11.20 |
0.065436 |
106 -- 117 |
15 -- 27 |
DUF1249 protein YqiB |
|
_____________105___________118\n_____________|_____________|\n5'-UGG...CCAGU_____________GGAAA...GCG-3'\n______________GGG_UAGAAGAGG\n______________|||_||:||||||\n______________CCC_AUUUUCUCC\n3'-CGC...AAGUU___A_________ACGGC...AAG-5'\n_____________|_____________|\n_____________28____________14\n |
111 -- 117 |
15 -- 21 |
-17.3581 kcal/mol |
2.92425 kcal/mol |
3.23583 kcal/mol |
105 118@LB@ | |@LB@5'-UGG...CCAGU GGAAA...GCG-3'@LB@ GGG UAGAAGAGG@LB@ ||| ||:||||||@LB@ CCC AUUUUCUCC@LB@3'-CGC...AAGUU A ACGGC...AAG-5'@LB@ | |@LB@ 28 14@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -17.3581 kcal/mol@LB@Unfolding Energy - mRNA 2.92425 kcal/mol@LB@Unfolding Energy - sRNA 3.23583 kcal/mol@LB@@LB@Position - mRNA 106 -- 117@LB@Position - sRNA 15 -- 27@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 15 -- 21@LB@ |
40 |
0.008109 |
0.5385 |
b0784 |
moaD |
-13.26 |
0.028244 |
179 -- 200 |
15 -- 38 |
molybdopterin synthase small subunit |
|
_____________178______________________201\n_____________|________________________|\n5'-GCA...AGUCG_____________________C__AUGAU...AGC-3'\n______________GGUGACUUUAAGG__UGGAAG_GG\n______________:|||||||:||||__|::|||_||\n______________UCACUGAAGUUCC__AUUUUC_CC\n3'-CGC...GCCCG_____________CA______U__ACGGC...AAG-5'\n_____________|________________________|\n_____________39_______________________14\n |
185 -- 191 |
26 -- 32 |
-24.646 kcal/mol |
4.81525 kcal/mol |
6.57247 kcal/mol |
178 201@LB@ | |@LB@5'-GCA...AGUCG C AUGAU...AGC-3'@LB@ GGUGACUUUAAGG UGGAAG GG@LB@ :|||||||:|||| |::||| ||@LB@ UCACUGAAGUUCC AUUUUC CC@LB@3'-CGC...GCCCG CA U ACGGC...AAG-5'@LB@ | |@LB@ 39 14@LB@@LB@@LB@Energy -13.26 kcal/mol@LB@Hybridization Energy -24.646 kcal/mol@LB@Unfolding Energy - mRNA 4.81525 kcal/mol@LB@Unfolding Energy - sRNA 6.57247 kcal/mol@LB@@LB@Position - mRNA 179 -- 200@LB@Position - sRNA 15 -- 38@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 26 -- 32@LB@ |
45 |
0.009513 |
0.5385 |
b2513 |
yfgM |
-9.58 |
0.124672 |
177 -- 189 |
15 -- 27 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________176___________190\n_____________|_____________|\n5'-GGC...UUACU_________A___AGAAG...UUG-3'\n______________GGGUUAAGG_AGG\n______________|||||||::_|||\n______________CCCAAUUUU_UCC\n3'-CGC...AAGUU_________C___ACGGC...AAG-5'\n_____________|_____________|\n_____________28____________14\n |
179 -- 185 |
19 -- 25 |
-14.0675 kcal/mol |
1.24912 kcal/mol |
3.23583 kcal/mol |
176 190@LB@ | |@LB@5'-GGC...UUACU A AGAAG...UUG-3'@LB@ GGGUUAAGG AGG@LB@ |||||||:: |||@LB@ CCCAAUUUU UCC@LB@3'-CGC...AAGUU C ACGGC...AAG-5'@LB@ | |@LB@ 28 14@LB@@LB@@LB@Energy -9.58 kcal/mol@LB@Hybridization Energy -14.0675 kcal/mol@LB@Unfolding Energy - mRNA 1.24912 kcal/mol@LB@Unfolding Energy - sRNA 3.23583 kcal/mol@LB@@LB@Position - mRNA 177 -- 189@LB@Position - sRNA 15 -- 27@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 19 -- 25@LB@ |
74 |
0.01362 |
0.5385 |
b0946 |
zapC |
-12.02 |
0.046851 |
175 -- 197 |
15 -- 35 |
FtsZ stabilizer |
|
_____________174_____________________198\n_____________|_______________________|\n5'-AUU...GCUGC_______U_____AG________CAGAU...GUU-3'\n______________GGUUUUA_AGGGU__GGGAGAGG\n______________|::||:|_|||||__:::|||||\n______________CUGAAGU_UCCCA__UUUUCUCC\n3'-CGC...CGUCA_____________A_________ACGGC...AAG-5'\n_____________|_______________________|\n_____________36______________________14\n |
191 -- 197 |
15 -- 21 |
-19.3355 kcal/mol |
3.98393 kcal/mol |
3.33058 kcal/mol |
174 198@LB@ | |@LB@5'-AUU...GCUGC U AG CAGAU...GUU-3'@LB@ GGUUUUA AGGGU GGGAGAGG@LB@ |::||:| ||||| :::|||||@LB@ CUGAAGU UCCCA UUUUCUCC@LB@3'-CGC...CGUCA A ACGGC...AAG-5'@LB@ | |@LB@ 36 14@LB@@LB@@LB@Energy -12.02 kcal/mol@LB@Hybridization Energy -19.3355 kcal/mol@LB@Unfolding Energy - mRNA 3.98393 kcal/mol@LB@Unfolding Energy - sRNA 3.33058 kcal/mol@LB@@LB@Position - mRNA 175 -- 197@LB@Position - sRNA 15 -- 35@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 15 -- 21@LB@ |
77 |
0.01396 |
0.5385 |
b3644 |
yicC |
-11.79 |
0.051421 |
238 -- 254 |
15 -- 31 |
UPF0701 family protein |
|
_____________237_______________255\n_____________|_________________|\n5'-UCU...UGAAA________GAAU_____AGCGC...AAA-3'\n______________UCAAGGGU____GGGGG\n______________||||||||____:|:||\n______________AGUUCCCA____UCUCC\n3'-CGC...ACUGA________AUUU_____ACGGC...AAG-5'\n_____________|_________________|\n_____________32________________14\n |
239 -- 245 |
24 -- 30 |
-20.4957 kcal/mol |
5.4171 kcal/mol |
3.28624 kcal/mol |
237 255@LB@ | |@LB@5'-UCU...UGAAA GAAU AGCGC...AAA-3'@LB@ UCAAGGGU GGGGG@LB@ |||||||| :|:||@LB@ AGUUCCCA UCUCC@LB@3'-CGC...ACUGA AUUU ACGGC...AAG-5'@LB@ | |@LB@ 32 14@LB@@LB@@LB@Energy -11.79 kcal/mol@LB@Hybridization Energy -20.4957 kcal/mol@LB@Unfolding Energy - mRNA 5.4171 kcal/mol@LB@Unfolding Energy - sRNA 3.28624 kcal/mol@LB@@LB@Position - mRNA 238 -- 254@LB@Position - sRNA 15 -- 31@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 24 -- 30@LB@ |
187 |
0.03332 |
0.5559 |
b2019 |
hisG |
-10.76 |
0.077976 |
170 -- 191 |
15 -- 34 |
ATP phosphoribosyltransferase |
|
_____________169____________________192\n_____________|______________________|\n5'-UUU...AUAAC_G_____ACA____U_______AAUAA...AUC-3'\n______________G_UUCAG___GGUU_AAAGAGG\n______________:_||||:___||||_|||||||\n______________U_AAGUU___CCAA_UUUCUCC\n3'-CGC...GUCAC_G_____C______U_______ACGGC...AAG-5'\n_____________|______________________|\n_____________35_____________________14\n |
185 -- 191 |
15 -- 21 |
-17.0816 kcal/mol |
2.9882 kcal/mol |
3.33044 kcal/mol |
169 192@LB@ | |@LB@5'-UUU...AUAAC G ACA U AAUAA...AUC-3'@LB@ G UUCAG GGUU AAAGAGG@LB@ : ||||: |||| |||||||@LB@ U AAGUU CCAA UUUCUCC@LB@3'-CGC...GUCAC G C U ACGGC...AAG-5'@LB@ | |@LB@ 35 14@LB@@LB@@LB@Energy -10.76 kcal/mol@LB@Hybridization Energy -17.0816 kcal/mol@LB@Unfolding Energy - mRNA 2.9882 kcal/mol@LB@Unfolding Energy - sRNA 3.33044 kcal/mol@LB@@LB@Position - mRNA 170 -- 191@LB@Position - sRNA 15 -- 34@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 15 -- 21@LB@ |