35 |
0.006586 |
0.5385 |
b2351 |
gtrB |
-12.36 |
0.040837 |
174 -- 213 |
48 -- 89 |
CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase |
|
_____________173________________________________________214\n_____________|__________________________________________|\n5'-GCA...UAUUC_____________U______GG__G___AA___A__UA____UUGUA...AAG-3'\n______________AAAGUUCAU__UG_CUUUAG__AU_CGA__UGA_GA__UCUC\n______________||||||||:__||_||||||__||_|||__|||_:|__||||\n______________UUUCAAGUG__AC_GAAAUC__UA_GCU__ACU_UU__AGAG\n3'-CGC...GGCGU_________CA__C______AA__A___CA___C__UG____CUUUG...AAG-5'\n_____________|__________________________________________|\n_____________90_________________________________________47\n |
176 -- 182 |
81 -- 87 |
-27.281 kcal/mol |
10.5075 kcal/mol |
4.41572 kcal/mol |
173 214@LB@ | |@LB@5'-GCA...UAUUC U GG G AA A UA UUGUA...AAG-3'@LB@ AAAGUUCAU UG CUUUAG AU CGA UGA GA UCUC@LB@ ||||||||: || |||||| || ||| ||| :| ||||@LB@ UUUCAAGUG AC GAAAUC UA GCU ACU UU AGAG@LB@3'-CGC...GGCGU CA C AA A CA C UG CUUUG...AAG-5'@LB@ | |@LB@ 90 47@LB@@LB@@LB@Energy -12.36 kcal/mol@LB@Hybridization Energy -27.281 kcal/mol@LB@Unfolding Energy - mRNA 10.5075 kcal/mol@LB@Unfolding Energy - sRNA 4.41572 kcal/mol@LB@@LB@Position - mRNA 174 -- 213@LB@Position - sRNA 48 -- 89@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 81 -- 87@LB@ |
125 |
0.02168 |
0.5385 |
b3380 |
yhfW |
-9.99 |
0.106098 |
159 -- 190 |
48 -- 81 |
phosphopentomutase-related metalloenzyme superfamily protein |
|
_____________158_________________________________191\n_____________|___________________________________|\n5'-CUC...GAAAU___C___C________GAC___CUU__________UGGGG...GUG-3'\n______________CGU_GGU____GUUAU___AGU___GGAAACUCUC\n______________|||_||:____|||||___|||___:|||||||||\n______________GCA_CCG____CAAUA___UCA___UCUUUGAGAG\n3'-CGC...CAAGU___A___AAAU_____AGC___AC___________CUUUG...AAG-5'\n_____________|___________________________________|\n_____________82__________________________________47\n |
184 -- 190 |
48 -- 54 |
-22.1995 kcal/mol |
7.79728 kcal/mol |
4.41067 kcal/mol |
158 191@LB@ | |@LB@5'-CUC...GAAAU C C GAC CUU UGGGG...GUG-3'@LB@ CGU GGU GUUAU AGU GGAAACUCUC@LB@ ||| ||: ||||| ||| :|||||||||@LB@ GCA CCG CAAUA UCA UCUUUGAGAG@LB@3'-CGC...CAAGU A AAAU AGC AC CUUUG...AAG-5'@LB@ | |@LB@ 82 47@LB@@LB@@LB@Energy -9.99 kcal/mol@LB@Hybridization Energy -22.1995 kcal/mol@LB@Unfolding Energy - mRNA 7.79728 kcal/mol@LB@Unfolding Energy - sRNA 4.41067 kcal/mol@LB@@LB@Position - mRNA 159 -- 190@LB@Position - sRNA 48 -- 81@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 48 -- 54@LB@ |
99 |
0.01653 |
0.5385 |
b0004 |
thrC |
-7.16 |
0.308279 |
183 -- 210 |
49 -- 64 |
L-threonine synthase |
|
_____________182__________________________211\n_____________|____________________________|\n5'-CGC...GCGCA_____AC___AAAACUAAAU________ACAAU...ACG-3'\n______________CGAGU__UGG__________GAAACUCU\n______________|||||__||:__________||||||||\n______________GCUCA__ACU__________CUUUGAGA\n3'-CGC...AAUAA____________________________GCUUU...AAG-5'\n_____________|____________________________|\n_____________65___________________________48\n |
204 -- 210 |
49 -- 55 |
-14.0058 kcal/mol |
2.63666 kcal/mol |
4.20534 kcal/mol |
182 211@LB@ | |@LB@5'-CGC...GCGCA AC AAAACUAAAU ACAAU...ACG-3'@LB@ CGAGU UGG GAAACUCU@LB@ ||||| ||: ||||||||@LB@ GCUCA ACU CUUUGAGA@LB@3'-CGC...AAUAA GCUUU...AAG-5'@LB@ | |@LB@ 65 48@LB@@LB@@LB@Energy -7.16 kcal/mol@LB@Hybridization Energy -14.0058 kcal/mol@LB@Unfolding Energy - mRNA 2.63666 kcal/mol@LB@Unfolding Energy - sRNA 4.20534 kcal/mol@LB@@LB@Position - mRNA 183 -- 210@LB@Position - sRNA 49 -- 64@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 49 -- 55@LB@ |
113 |
0.0192 |
0.5385 |
b2573 |
rpoE |
-9.32 |
0.137991 |
165 -- 193 |
49 -- 83 |
RNA polymerase sigma E factor |
|
_____________164___________________________________194\n_____________|_____________________________________|\n5'-ACA...GAUAG________AAA_______UG_________________ACCUC...UGG-3'\n______________CGCG_UGG___UUUGGUU_________GGGAGACUUU\n______________|:||_|||___|||:|||_________|:||:|||:|\n______________GUGC_ACC___AAAUCAA_________CUCUUUGAGA\n3'-CGC...UUCAA____A___G_________UAAGCUCAA__________GCUUU...AAG-5'\n_____________|_____________________________________|\n_____________84____________________________________48\n |
184 -- 190 |
52 -- 58 |
-21.709 kcal/mol |
7.98 kcal/mol |
4.40602 kcal/mol |
164 194@LB@ | |@LB@5'-ACA...GAUAG AAA UG ACCUC...UGG-3'@LB@ CGCG UGG UUUGGUU GGGAGACUUU@LB@ |:|| ||| |||:||| |:||:|||:|@LB@ GUGC ACC AAAUCAA CUCUUUGAGA@LB@3'-CGC...UUCAA A G UAAGCUCAA GCUUU...AAG-5'@LB@ | |@LB@ 84 48@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -21.709 kcal/mol@LB@Unfolding Energy - mRNA 7.98 kcal/mol@LB@Unfolding Energy - sRNA 4.40602 kcal/mol@LB@@LB@Position - mRNA 165 -- 193@LB@Position - sRNA 49 -- 83@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 52 -- 58@LB@ |
8 |
0.001355 |
0.5385 |
b3915 |
fieF |
-13.87 |
0.021962 |
2 -- 39 |
50 -- 90 |
ferrous iron and zinc transporter |
|
_____________1_____________________________________________40\n_____________|_____________________________________________|\n__________5'-A_________U_____AA___A_____________A_U__C_____ACGUU...AUA-3'\n______________AAAAGUUCA_CGUUG__GCU________UUGAGU_G_AG_AACUC\n______________|||||||||_|||||__|||________|:||||_|_||_|||||\n______________UUUUCAAGU_GCAAC__CGA________AGCUCA_C_UC_UUGAG\n3'-CGC...AGGCG____________________AAUCAAUA______A____U_____AGCUU...AAG-5'\n_____________|_____________________________________________|\n_____________91____________________________________________49\n |
4 -- 10 |
82 -- 88 |
-26.5193 kcal/mol |
8.24047 kcal/mol |
4.40801 kcal/mol |
1 40@LB@ | |@LB@ 5'-A U AA A A U C ACGUU...AUA-3'@LB@ AAAAGUUCA CGUUG GCU UUGAGU G AG AACUC@LB@ ||||||||| ||||| ||| |:|||| | || |||||@LB@ UUUUCAAGU GCAAC CGA AGCUCA C UC UUGAG@LB@3'-CGC...AGGCG AAUCAAUA A U AGCUU...AAG-5'@LB@ | |@LB@ 91 49@LB@@LB@@LB@Energy -13.87 kcal/mol@LB@Hybridization Energy -26.5193 kcal/mol@LB@Unfolding Energy - mRNA 8.24047 kcal/mol@LB@Unfolding Energy - sRNA 4.40801 kcal/mol@LB@@LB@Position - mRNA 2 -- 39@LB@Position - sRNA 50 -- 90@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 82 -- 88@LB@ |
73 |
0.0135 |
0.5385 |
b3362 |
yhfG |
-12.23 |
0.043008 |
184 -- 212 |
50 -- 86 |
putative antitoxin for Fic |
|
_____________183___________________________________213\n_____________|_____________________________________|\n5'-GAU...GACAC_____G_GA___A__________A___GA________ACCGA...CUU-3'\n______________GUUCA_G__GGC_________UC_AGU__AGAAACUC\n______________|||||_|__|||_________||_|||__||||||||\n______________CAAGU_C__CCG_________AG_UCA__UCUUUGAG\n3'-CGC...GUUUU_____G_AA___AAAUCAAUA__C___AC________AGCUU...AAG-5'\n_____________|_____________________________________|\n_____________87____________________________________49\n |
206 -- 212 |
50 -- 56 |
-25.6976 kcal/mol |
9.05881 kcal/mol |
4.40785 kcal/mol |
183 213@LB@ | |@LB@5'-GAU...GACAC G GA A A GA ACCGA...CUU-3'@LB@ GUUCA G GGC UC AGU AGAAACUC@LB@ ||||| | ||| || ||| ||||||||@LB@ CAAGU C CCG AG UCA UCUUUGAG@LB@3'-CGC...GUUUU G AA AAAUCAAUA C AC AGCUU...AAG-5'@LB@ | |@LB@ 87 49@LB@@LB@@LB@Energy -12.23 kcal/mol@LB@Hybridization Energy -25.6976 kcal/mol@LB@Unfolding Energy - mRNA 9.05881 kcal/mol@LB@Unfolding Energy - sRNA 4.40785 kcal/mol@LB@@LB@Position - mRNA 184 -- 212@LB@Position - sRNA 50 -- 86@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 50 -- 56@LB@ |
144 |
0.02429 |
0.5467 |
b3156 |
yhbS |
-10.71 |
0.079718 |
207 -- 222 |
50 -- 67 |
GNAT family putative N-acetyltransferase |
|
_____________206________________223\n_____________|__________________|\n5'-CCG...UGCUA__________________CCAUU...AUC-3'\n______________AUUCGAGU__AGAAAUUC\n______________||||||||__|||||:||\n______________UAAGCUCA__UCUUUGAG\n3'-CGC...AUCAA________AC________AGCUU...AAG-5'\n_____________|__________________|\n_____________68_________________49\n |
216 -- 222 |
50 -- 56 |
-17.6544 kcal/mol |
2.73618 kcal/mol |
4.21029 kcal/mol |
206 223@LB@ | |@LB@5'-CCG...UGCUA CCAUU...AUC-3'@LB@ AUUCGAGU AGAAAUUC@LB@ |||||||| |||||:||@LB@ UAAGCUCA UCUUUGAG@LB@3'-CGC...AUCAA AC AGCUU...AAG-5'@LB@ | |@LB@ 68 49@LB@@LB@@LB@Energy -10.71 kcal/mol@LB@Hybridization Energy -17.6544 kcal/mol@LB@Unfolding Energy - mRNA 2.73618 kcal/mol@LB@Unfolding Energy - sRNA 4.21029 kcal/mol@LB@@LB@Position - mRNA 207 -- 222@LB@Position - sRNA 50 -- 67@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 50 -- 56@LB@ |
47 |
0.009854 |
0.5385 |
b3408 |
feoA |
-10.27 |
0.095129 |
159 -- 188 |
52 -- 83 |
ferrous iron transporter protein A |
|
_____________158_________________________________189\n_____________|___________________________________|\n5'-AGC...CGCCC____A_______________C___UAA________AAGUA...CUG-3'\n______________CAUG__GGU___AGUUA_UC_AGU___UGAGAAAC\n______________||:|__||:___|||||_||_|||___||||||||\n______________GUGC__CCG___UCAAU_AG_UCA___ACUCUUUG\n3'-CGC...UUCAA____AA___AAA_____A__C______________AGAGC...AAG-5'\n_____________|___________________________________|\n_____________84__________________________________51\n |
182 -- 188 |
52 -- 58 |
-20.9255 kcal/mol |
6.25891 kcal/mol |
4.4004 kcal/mol |
158 189@LB@ | |@LB@5'-AGC...CGCCC A C UAA AAGUA...CUG-3'@LB@ CAUG GGU AGUUA UC AGU UGAGAAAC@LB@ ||:| ||: ||||| || ||| ||||||||@LB@ GUGC CCG UCAAU AG UCA ACUCUUUG@LB@3'-CGC...UUCAA AA AAA A C AGAGC...AAG-5'@LB@ | |@LB@ 84 51@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -20.9255 kcal/mol@LB@Unfolding Energy - mRNA 6.25891 kcal/mol@LB@Unfolding Energy - sRNA 4.4004 kcal/mol@LB@@LB@Position - mRNA 159 -- 188@LB@Position - sRNA 52 -- 83@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 52 -- 58@LB@ |
137 |
0.02312 |
0.5385 |
b2153 |
folE |
-12.97 |
0.031813 |
230 -- 265 |
52 -- 87 |
GTP cyclohydrolase I |
|
_____________229___________________________________266\n_____________|_____________________________________|\n5'-CUG...GCCCU________AA___G_______CG____GACU______ACCGC...ACG-3'\n______________GGUUCAUG___GC_UUAGUUG__CGAG____GGAAAC\n______________:|||||:|___||_||||||:__||||____:|||||\n______________UCAAGUGC___CG_AAUCAAU__GCUC____UCUUUG\n3'-CGC...CGUUU________AAC__A_______AA____AAC_______AGAGC...AAG-5'\n_____________|_____________________________________|\n_____________88____________________________________51\n |
243 -- 249 |
67 -- 73 |
-29.7116 kcal/mol |
12.3362 kcal/mol |
4.40736 kcal/mol |
229 266@LB@ | |@LB@5'-CUG...GCCCU AA G CG GACU ACCGC...ACG-3'@LB@ GGUUCAUG GC UUAGUUG CGAG GGAAAC@LB@ :|||||:| || ||||||: |||| :|||||@LB@ UCAAGUGC CG AAUCAAU GCUC UCUUUG@LB@3'-CGC...CGUUU AAC A AA AAC AGAGC...AAG-5'@LB@ | |@LB@ 88 51@LB@@LB@@LB@Energy -12.97 kcal/mol@LB@Hybridization Energy -29.7116 kcal/mol@LB@Unfolding Energy - mRNA 12.3362 kcal/mol@LB@Unfolding Energy - sRNA 4.40736 kcal/mol@LB@@LB@Position - mRNA 230 -- 265@LB@Position - sRNA 52 -- 87@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 67 -- 73@LB@ |
140 |
0.02329 |
0.5385 |
b3026 |
qseC |
-7.47 |
0.277092 |
174 -- 202 |
52 -- 78 |
quorum sensing sensory histidine kinase in two-component regulatory system with QseB |
|
_____________173___________________________203\n_____________|_____________________________|\n5'-AAA...GUGCA____A_______CA_AUU__G________GAAAU...GGA-3'\n______________UGGU_UUGGUUA__C___AG_UGAGAAAU\n______________|||:_||:||||__|___||_|||||||:\n______________ACCG_AAUCAAU__G___UC_ACUCUUUG\n3'-CGC...GUGCA____A_______AA_C____A________AGAGC...AAG-5'\n_____________|_____________________________|\n_____________79____________________________51\n |
196 -- 202 |
52 -- 58 |
-18.6962 kcal/mol |
6.8409 kcal/mol |
4.38944 kcal/mol |
173 203@LB@ | |@LB@5'-AAA...GUGCA A CA AUU G GAAAU...GGA-3'@LB@ UGGU UUGGUUA C AG UGAGAAAU@LB@ |||: ||:|||| | || |||||||:@LB@ ACCG AAUCAAU G UC ACUCUUUG@LB@3'-CGC...GUGCA A AA C A AGAGC...AAG-5'@LB@ | |@LB@ 79 51@LB@@LB@@LB@Energy -7.47 kcal/mol@LB@Hybridization Energy -18.6962 kcal/mol@LB@Unfolding Energy - mRNA 6.8409 kcal/mol@LB@Unfolding Energy - sRNA 4.38944 kcal/mol@LB@@LB@Position - mRNA 174 -- 202@LB@Position - sRNA 52 -- 78@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 52 -- 58@LB@ |