| 165 |
0.02909 |
0.5559 |
b3283 |
yrdD |
-9.69 |
0.119373 |
265 -- 285 |
52 -- 72 |
ssDNA-binding protein function unknown |
|
_____________264___________________286\n_____________|_____________________|\n5'-AAC...UGAAC___________UCC_______ACGGU...UUG-3'\n______________UGGUUAUUCGA___GGGAAAC\n______________|:|||||||||___|:|||||\n______________AUCAAUAAGCU___CUCUUUG\n3'-CGC...CCGAA___________CAA_______AGAGC...AAG-5'\n_____________|_____________________|\n_____________73____________________51\n |
279 -- 285 |
52 -- 58 |
-20.8466 kcal/mol |
6.85358 kcal/mol |
4.29991 kcal/mol |
264 286@LB@ | |@LB@5'-AAC...UGAAC UCC ACGGU...UUG-3'@LB@ UGGUUAUUCGA GGGAAAC@LB@ |:||||||||| |:|||||@LB@ AUCAAUAAGCU CUCUUUG@LB@3'-CGC...CCGAA CAA AGAGC...AAG-5'@LB@ | |@LB@ 73 51@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -20.8466 kcal/mol@LB@Unfolding Energy - mRNA 6.85358 kcal/mol@LB@Unfolding Energy - sRNA 4.29991 kcal/mol@LB@@LB@Position - mRNA 265 -- 285@LB@Position - sRNA 52 -- 72@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 87 |
0.01529 |
0.5385 |
b3636 |
rpmG |
-10.80 |
0.076825 |
199 -- 224 |
53 -- 84 |
50S ribosomal subunit protein L33 |
|
_____________198______________________________225\n_____________|________________________________|\n5'-CAC...AUAAA___________AA__G________________AUCAA...AAC-3'\n______________UCA___UGGCU__AG_UAUUCG___UGAGAAA\n______________|||___|||||__||_||||||___|||||||\n______________AGU___ACCGA__UC_AUAAGC___ACUCUUU\n3'-CGC...UUUCA___GCA_____AA__A______UCA_______GAGAG...AAG-5'\n_____________|________________________________|\n_____________85_______________________________52\n |
218 -- 224 |
53 -- 59 |
-20.7518 kcal/mol |
5.65772 kcal/mol |
4.29409 kcal/mol |
198 225@LB@ | |@LB@5'-CAC...AUAAA AA G AUCAA...AAC-3'@LB@ UCA UGGCU AG UAUUCG UGAGAAA@LB@ ||| ||||| || |||||| |||||||@LB@ AGU ACCGA UC AUAAGC ACUCUUU@LB@3'-CGC...UUUCA GCA AA A UCA GAGAG...AAG-5'@LB@ | |@LB@ 85 52@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -20.7518 kcal/mol@LB@Unfolding Energy - mRNA 5.65772 kcal/mol@LB@Unfolding Energy - sRNA 4.29409 kcal/mol@LB@@LB@Position - mRNA 199 -- 224@LB@Position - sRNA 53 -- 84@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 21 |
0.003546 |
0.5385 |
b0820 |
ybiT |
-11.98 |
0.047670 |
3 -- 23 |
55 -- 78 |
ABC-F family putative regulatory ATPase |
|
_____________2________________________24\n_____________|________________________|\n_________5'-CC_________GCCA___________AUAUU...UUG-3'\n______________UGGC___AG____UUGGGUUGAGA\n______________||||___||____|:|:|||||||\n______________ACCG___UC____AGCUCAACUCU\n3'-CGC...GUGCA____AAA__AAUA___________UUGAG...AAG-5'\n_____________|________________________|\n_____________79_______________________54\n |
17 -- 23 |
55 -- 61 |
-19.5112 kcal/mol |
4.68968 kcal/mol |
2.84302 kcal/mol |
2 24@LB@ | |@LB@ 5'-CC GCCA AUAUU...UUG-3'@LB@ UGGC AG UUGGGUUGAGA@LB@ |||| || |:|:|||||||@LB@ ACCG UC AGCUCAACUCU@LB@3'-CGC...GUGCA AAA AAUA UUGAG...AAG-5'@LB@ | |@LB@ 79 54@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -19.5112 kcal/mol@LB@Unfolding Energy - mRNA 4.68968 kcal/mol@LB@Unfolding Energy - sRNA 2.84302 kcal/mol@LB@@LB@Position - mRNA 3 -- 23@LB@Position - sRNA 55 -- 78@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 63 |
0.01271 |
0.5385 |
b3306 |
rpsH |
-10.49 |
0.086924 |
89 -- 100 |
56 -- 67 |
30S ribosomal subunit protein S8 |
|
_____________88___________101\n_____________|____________|\n5'-AGC...CGGAA____________CCGUA...AAG-3'\n______________GUUCGGGUUGAG\n______________:||||:||||||\n______________UAAGCUCAACUC\n3'-CGC...AUCAA____________UUUGA...AAG-5'\n_____________|____________|\n_____________68___________55\n |
94 -- 100 |
56 -- 62 |
-16.8063 kcal/mol |
4.74141 kcal/mol |
1.57281 kcal/mol |
88 101@LB@ | |@LB@5'-AGC...CGGAA CCGUA...AAG-3'@LB@ GUUCGGGUUGAG@LB@ :||||:||||||@LB@ UAAGCUCAACUC@LB@3'-CGC...AUCAA UUUGA...AAG-5'@LB@ | |@LB@ 68 55@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -16.8063 kcal/mol@LB@Unfolding Energy - mRNA 4.74141 kcal/mol@LB@Unfolding Energy - sRNA 1.57281 kcal/mol@LB@@LB@Position - mRNA 89 -- 100@LB@Position - sRNA 56 -- 67@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 154 |
0.02609 |
0.5541 |
b4195 |
ulaC |
-15.85 |
0.009707 |
6 -- 31 |
56 -- 80 |
L-ascorbate-specific enzyme IIA component of PTS |
|
_____________5__________________________32\n_____________|__________________________|\n______5'-GCGCG______GAGUACAAAAG_________UGGCG...UGG-3'\n______________GUUGGC___________CGAGUUGAG\n______________||||||___________|||||||||\n______________CAACCG___________GCUCAACUC\n3'-CGC...AAGUG______AAAUCAAUAA__________UUUGA...AAG-5'\n_____________|__________________________|\n_____________81_________________________55\n |
25 -- 31 |
56 -- 62 |
-23.4839 kcal/mol |
5.91355 kcal/mol |
1.71557 kcal/mol |
5 32@LB@ | |@LB@ 5'-GCGCG GAGUACAAAAG UGGCG...UGG-3'@LB@ GUUGGC CGAGUUGAG@LB@ |||||| |||||||||@LB@ CAACCG GCUCAACUC@LB@3'-CGC...AAGUG AAAUCAAUAA UUUGA...AAG-5'@LB@ | |@LB@ 81 55@LB@@LB@@LB@Energy -15.85 kcal/mol@LB@Hybridization Energy -23.4839 kcal/mol@LB@Unfolding Energy - mRNA 5.91355 kcal/mol@LB@Unfolding Energy - sRNA 1.71557 kcal/mol@LB@@LB@Position - mRNA 6 -- 31@LB@Position - sRNA 56 -- 80@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 182 |
0.03197 |
0.5559 |
b0212 |
gloB |
-7.96 |
0.231442 |
50 -- 71 |
56 -- 75 |
hydroxyacylglutathione hydrolase |
|
_____________49_____________________72\n_____________|______________________|\n5'-UUG...AUACA_______GAACCA_________CUGGC...AGC-3'\n______________UUUUAGU______CGGGUUGAG\n______________:||||||______||:||||||\n______________GAAAUCA______GCUCAACUC\n3'-CGC...CAACC_______AUAA___________UUUGA...AAG-5'\n_____________|______________________|\n_____________76_____________________55\n |
65 -- 71 |
56 -- 62 |
-16.3693 kcal/mol |
6.6953 kcal/mol |
1.71204 kcal/mol |
49 72@LB@ | |@LB@5'-UUG...AUACA GAACCA CUGGC...AGC-3'@LB@ UUUUAGU CGGGUUGAG@LB@ :|||||| ||:||||||@LB@ GAAAUCA GCUCAACUC@LB@3'-CGC...CAACC AUAA UUUGA...AAG-5'@LB@ | |@LB@ 76 55@LB@@LB@@LB@Energy -7.96 kcal/mol@LB@Hybridization Energy -16.3693 kcal/mol@LB@Unfolding Energy - mRNA 6.6953 kcal/mol@LB@Unfolding Energy - sRNA 1.71204 kcal/mol@LB@@LB@Position - mRNA 50 -- 71@LB@Position - sRNA 56 -- 75@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 14 |
0.002739 |
0.5385 |
b0903 |
pflB |
-11.82 |
0.050867 |
80 -- 105 |
57 -- 81 |
formate C-acetyltransferase 1 anaerobic; pyruvate formate-lyase 1 |
|
_____________79_________________________106\n_____________|__________________________|\n5'-CAC...AUUAU__G____GGUUU____G_________CAUAC...ACU-3'\n______________CG_UGGU_____GUUG_UUGGGUUGA\n______________||_|||:_____|||:_|:|:|||||\n______________GC_ACCG_____CAAU_AGCUCAACU\n3'-CGC...CAAGU__A____AAAU_____A_________CUUUG...AAG-5'\n_____________|__________________________|\n_____________82_________________________56\n |
99 -- 105 |
57 -- 63 |
-19.5015 kcal/mol |
6.38537 kcal/mol |
1.29708 kcal/mol |
79 106@LB@ | |@LB@5'-CAC...AUUAU G GGUUU G CAUAC...ACU-3'@LB@ CG UGGU GUUG UUGGGUUGA@LB@ || |||: |||: |:|:|||||@LB@ GC ACCG CAAU AGCUCAACU@LB@3'-CGC...CAAGU A AAAU A CUUUG...AAG-5'@LB@ | |@LB@ 82 56@LB@@LB@@LB@Energy -11.82 kcal/mol@LB@Hybridization Energy -19.5015 kcal/mol@LB@Unfolding Energy - mRNA 6.38537 kcal/mol@LB@Unfolding Energy - sRNA 1.29708 kcal/mol@LB@@LB@Position - mRNA 80 -- 105@LB@Position - sRNA 57 -- 81@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 57 -- 63@LB@ |
| 53 |
0.01075 |
0.5385 |
b2215 |
ompC |
-12.88 |
0.032936 |
67 -- 90 |
57 -- 76 |
outer membrane porin protein C |
|
_____________66_______________________91\n_____________|________________________|\n5'-AUC...UAAAA________AUCA______U_____AUUAU...AUC-3'\n______________GUUUUAGU____UAUUCG_GUUGG\n______________|:||||||____||||||_||||:\n______________CGAAAUCA____AUAAGC_CAACU\n3'-CGC...GCAAC__________________U_____CUUUG...AAG-5'\n_____________|________________________|\n_____________77_______________________56\n |
68 -- 74 |
69 -- 75 |
-17.5321 kcal/mol |
3.43109 kcal/mol |
1.21756 kcal/mol |
66 91@LB@ | |@LB@5'-AUC...UAAAA AUCA U AUUAU...AUC-3'@LB@ GUUUUAGU UAUUCG GUUGG@LB@ |:|||||| |||||| ||||:@LB@ CGAAAUCA AUAAGC CAACU@LB@3'-CGC...GCAAC U CUUUG...AAG-5'@LB@ | |@LB@ 77 56@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -17.5321 kcal/mol@LB@Unfolding Energy - mRNA 3.43109 kcal/mol@LB@Unfolding Energy - sRNA 1.21756 kcal/mol@LB@@LB@Position - mRNA 67 -- 90@LB@Position - sRNA 57 -- 76@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 104 |
0.0176 |
0.5385 |
b2788 |
gudX |
-9.05 |
0.153387 |
171 -- 179 |
57 -- 65 |
glucarate dehydratase-related protein substrate unknown |
|
_____________170_______180\n_____________|_________|\n5'-CGG...GCGUA_________AACCU...CAU-3'\n______________UCGAGUUGA\n______________|||||||||\n______________AGCUCAACU\n3'-CGC...CAAUA_________CUUUG...AAG-5'\n_____________|_________|\n_____________66________56\n |
173 -- 179 |
57 -- 63 |
-12.8916 kcal/mol |
2.7095 kcal/mol |
1.13183 kcal/mol |
170 180@LB@ | |@LB@5'-CGG...GCGUA AACCU...CAU-3'@LB@ UCGAGUUGA@LB@ |||||||||@LB@ AGCUCAACU@LB@3'-CGC...CAAUA CUUUG...AAG-5'@LB@ | |@LB@ 66 56@LB@@LB@@LB@Energy -9.05 kcal/mol@LB@Hybridization Energy -12.8916 kcal/mol@LB@Unfolding Energy - mRNA 2.7095 kcal/mol@LB@Unfolding Energy - sRNA 1.13183 kcal/mol@LB@@LB@Position - mRNA 171 -- 179@LB@Position - sRNA 57 -- 65@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 57 -- 63@LB@ |
| 149 |
0.0249 |
0.5467 |
b0737 |
tolQ |
-11.44 |
0.059241 |
123 -- 143 |
57 -- 77 |
membrane spanning protein in TolA-TolQ-TolR complex |
|
_____________122___________________144\n_____________|_____________________|\n5'-GCA...GCAGA____C__________C_____CCCAC...CCA-3'\n______________GGUU_UGGUUGUUUG_GUUGA\n______________||:|_|:|||:||:|_|||||\n______________CCGA_AUCAAUAAGC_CAACU\n3'-CGC...UGCAA____A__________U_____CUUUG...AAG-5'\n_____________|_____________________|\n_____________78____________________56\n |
130 -- 136 |
64 -- 70 |
-20.7122 kcal/mol |
8.05008 kcal/mol |
1.21841 kcal/mol |
122 144@LB@ | |@LB@5'-GCA...GCAGA C C CCCAC...CCA-3'@LB@ GGUU UGGUUGUUUG GUUGA@LB@ ||:| |:|||:||:| |||||@LB@ CCGA AUCAAUAAGC CAACU@LB@3'-CGC...UGCAA A U CUUUG...AAG-5'@LB@ | |@LB@ 78 56@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -20.7122 kcal/mol@LB@Unfolding Energy - mRNA 8.05008 kcal/mol@LB@Unfolding Energy - sRNA 1.21841 kcal/mol@LB@@LB@Position - mRNA 123 -- 143@LB@Position - sRNA 57 -- 77@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 64 -- 70@LB@ |
