| 126 |
0.02177 |
0.5385 |
b4162 |
orn |
-9.93 |
0.108535 |
62 -- 89 |
61 -- 86 |
oligoribonuclease |
|
_____________61___________________________90\n_____________|____________________________|\n5'-ACA...UUGGC_______CG_C___GC___CCU__G___AGUUU...CCG-3'\n______________GUUCACG__G_GCU__UGG___UU_GAG\n______________|||||||__|_|||__|:|___||_|||\n______________CAAGUGC__C_CGA__AUC___AA_CUC\n3'-CGC...GUUUU_______AA_____A____AAU__G___AACUC...AAG-5'\n_____________|____________________________|\n_____________87___________________________60\n |
62 -- 68 |
80 -- 86 |
-20.598 kcal/mol |
8.95458 kcal/mol |
1.70915 kcal/mol |
61 90@LB@ | |@LB@5'-ACA...UUGGC CG C GC CCU G AGUUU...CCG-3'@LB@ GUUCACG G GCU UGG UU GAG@LB@ ||||||| | ||| |:| || |||@LB@ CAAGUGC C CGA AUC AA CUC@LB@3'-CGC...GUUUU AA A AAU G AACUC...AAG-5'@LB@ | |@LB@ 87 60@LB@@LB@@LB@Energy -9.93 kcal/mol@LB@Hybridization Energy -20.598 kcal/mol@LB@Unfolding Energy - mRNA 8.95458 kcal/mol@LB@Unfolding Energy - sRNA 1.70915 kcal/mol@LB@@LB@Position - mRNA 62 -- 89@LB@Position - sRNA 61 -- 86@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 192 |
0.03364 |
0.5559 |
b2333 |
yfcP |
-8.48 |
0.190877 |
22 -- 36 |
61 -- 77 |
putative fimbrial-like adhesin protein |
|
_____________21________________37\n_____________|_________________|\n5'-GCA...UACCC_________A_______CUUCA...AUU-3'\n______________GGUUUUGGU___UCGAG\n______________||:|||:||___|||||\n______________CCGAAAUCA___AGCUC\n3'-CGC...UGCAA_________AUA_____AACUC...AAG-5'\n_____________|_________________|\n_____________78________________60\n |
23 -- 29 |
70 -- 76 |
-16.4218 kcal/mol |
7.14733 kcal/mol |
0.796269 kcal/mol |
21 37@LB@ | |@LB@5'-GCA...UACCC A CUUCA...AUU-3'@LB@ GGUUUUGGU UCGAG@LB@ ||:|||:|| |||||@LB@ CCGAAAUCA AGCUC@LB@3'-CGC...UGCAA AUA AACUC...AAG-5'@LB@ | |@LB@ 78 60@LB@@LB@@LB@Energy -8.48 kcal/mol@LB@Hybridization Energy -16.4218 kcal/mol@LB@Unfolding Energy - mRNA 7.14733 kcal/mol@LB@Unfolding Energy - sRNA 0.796269 kcal/mol@LB@@LB@Position - mRNA 22 -- 36@LB@Position - sRNA 61 -- 77@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 19 |
0.003195 |
0.5385 |
b3739 |
atpI |
-12.12 |
0.045044 |
59 -- 85 |
62 -- 85 |
ATP synthase membrane-bound accessory factor |
|
_____________58___________________________86\n_____________|____________________________|\n5'-GAA...AUUUA_____CUU______AC____________AAUCA...ACC-3'\n______________UUCAC___UUGGCU__UUA_UUGUUUGA\n______________|||||___||||||__|||_||:||:||\n______________AAGUG___AACCGA__AAU_AAUAAGCU\n3'-CGC...UUUUC_____C_____________C________CAACU...AAG-5'\n_____________|____________________________|\n_____________86___________________________61\n |
79 -- 85 |
62 -- 68 |
-17.7596 kcal/mol |
3.93623 kcal/mol |
1.70582 kcal/mol |
58 86@LB@ | |@LB@5'-GAA...AUUUA CUU AC AAUCA...ACC-3'@LB@ UUCAC UUGGCU UUA UUGUUUGA@LB@ ||||| |||||| ||| ||:||:||@LB@ AAGUG AACCGA AAU AAUAAGCU@LB@3'-CGC...UUUUC C C CAACU...AAG-5'@LB@ | |@LB@ 86 61@LB@@LB@@LB@Energy -12.12 kcal/mol@LB@Hybridization Energy -17.7596 kcal/mol@LB@Unfolding Energy - mRNA 3.93623 kcal/mol@LB@Unfolding Energy - sRNA 1.70582 kcal/mol@LB@@LB@Position - mRNA 59 -- 85@LB@Position - sRNA 62 -- 85@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 28 |
0.005203 |
0.5385 |
b3308 |
rplE |
-12.95 |
0.031988 |
121 -- 134 |
62 -- 77 |
50S ribosomal subunit protein L5 |
|
_____________120______________135\n_____________|________________|\n5'-AAA...GUGUA________________AGACG...AGA-3'\n______________GGCUUUAG__AUUCGA\n______________||||||||__||||||\n______________CCGAAAUC__UAAGCU\n3'-CGC...UGCAA________AA______CAACU...AAG-5'\n_____________|________________|\n_____________78_______________61\n |
122 -- 128 |
70 -- 76 |
-17.2589 kcal/mol |
3.56808 kcal/mol |
0.736118 kcal/mol |
120 135@LB@ | |@LB@5'-AAA...GUGUA AGACG...AGA-3'@LB@ GGCUUUAG AUUCGA@LB@ |||||||| ||||||@LB@ CCGAAAUC UAAGCU@LB@3'-CGC...UGCAA AA CAACU...AAG-5'@LB@ | |@LB@ 78 61@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -17.2589 kcal/mol@LB@Unfolding Energy - mRNA 3.56808 kcal/mol@LB@Unfolding Energy - sRNA 0.736118 kcal/mol@LB@@LB@Position - mRNA 121 -- 134@LB@Position - sRNA 62 -- 77@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 43 |
0.009109 |
0.5385 |
b2531 |
iscR |
-9.39 |
0.134324 |
275 -- 298 |
62 -- 87 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________274________________________299\n_____________|__________________________|\n5'-AUG...GGCCC___A__________GAUAUUUC____AC-3'\n______________GGU_C_CGUUGGCU_________CGA\n______________:||_|_||||||||_________|||\n______________UCA_G_GCAACCGA_________GCU\n3'-CGC...CGUUU___A_U________AAUCAAUAA___CAACU...AAG-5'\n_____________|__________________________|\n_____________88_________________________61\n |
281 -- 287 |
74 -- 80 |
-16.3089 kcal/mol |
5.20915 kcal/mol |
1.70771 kcal/mol |
274 299@LB@ | |@LB@5'-AUG...GGCCC A GAUAUUUC AC-3'@LB@ GGU C CGUUGGCU CGA@LB@ :|| | |||||||| |||@LB@ UCA G GCAACCGA GCU@LB@3'-CGC...CGUUU A U AAUCAAUAA CAACU...AAG-5'@LB@ | |@LB@ 88 61@LB@@LB@@LB@Energy -9.39 kcal/mol@LB@Hybridization Energy -16.3089 kcal/mol@LB@Unfolding Energy - mRNA 5.20915 kcal/mol@LB@Unfolding Energy - sRNA 1.70771 kcal/mol@LB@@LB@Position - mRNA 275 -- 298@LB@Position - sRNA 62 -- 87@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 44 |
0.009138 |
0.5385 |
b4148 |
sugE |
-12.73 |
0.035076 |
273 -- 288 |
62 -- 77 |
multidrug efflux system protein |
|
_____________272______________289\n_____________|________________|\n5'-CGC...CCCAC_________C______CGCCG...UUA-3'\n______________GGCUUUAGU_GUUUGA\n______________|||||||||_:||:||\n______________CCGAAAUCA_UAAGCU\n3'-CGC...UGCAA_________A______CAACU...AAG-5'\n_____________|________________|\n_____________78_______________61\n |
275 -- 281 |
69 -- 75 |
-18.0703 kcal/mol |
4.60455 kcal/mol |
0.736118 kcal/mol |
272 289@LB@ | |@LB@5'-CGC...CCCAC C CGCCG...UUA-3'@LB@ GGCUUUAGU GUUUGA@LB@ ||||||||| :||:||@LB@ CCGAAAUCA UAAGCU@LB@3'-CGC...UGCAA A CAACU...AAG-5'@LB@ | |@LB@ 78 61@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -18.0703 kcal/mol@LB@Unfolding Energy - mRNA 4.60455 kcal/mol@LB@Unfolding Energy - sRNA 0.736118 kcal/mol@LB@@LB@Position - mRNA 273 -- 288@LB@Position - sRNA 62 -- 77@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 82 |
0.01477 |
0.5385 |
b3527 |
yhjJ |
-9.01 |
0.155560 |
190 -- 221 |
62 -- 91 |
putative periplasmic M16 family chaperone |
|
_____________189_______________________________222\n_____________|_________________________________|\n5'-CUC...UUGAU___________AUGCAG___ACAAAA_______CUUUU...GGC-3'\n______________CAGGGGUUCAC______GGC_______AUUCGA\n______________||:::||||||______|||_______||||||\n______________GUUUUCAAGUG______CCG_______UAAGCU\n3'-CGC...UAGGC___________CAA______AAAUCAA______CAACU...AAG-5'\n_____________|_________________________________|\n_____________92________________________________61\n |
194 -- 200 |
81 -- 87 |
-19.9715 kcal/mol |
6.94165 kcal/mol |
4.01597 kcal/mol |
189 222@LB@ | |@LB@5'-CUC...UUGAU AUGCAG ACAAAA CUUUU...GGC-3'@LB@ CAGGGGUUCAC GGC AUUCGA@LB@ ||:::|||||| ||| ||||||@LB@ GUUUUCAAGUG CCG UAAGCU@LB@3'-CGC...UAGGC CAA AAAUCAA CAACU...AAG-5'@LB@ | |@LB@ 92 61@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -19.9715 kcal/mol@LB@Unfolding Energy - mRNA 6.94165 kcal/mol@LB@Unfolding Energy - sRNA 4.01597 kcal/mol@LB@@LB@Position - mRNA 190 -- 221@LB@Position - sRNA 62 -- 91@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 107 |
0.01867 |
0.5385 |
b1478 |
adhP |
-13.80 |
0.022588 |
200 -- 222 |
62 -- 83 |
ethanol-active dehydrogenase/acetaldehyde-active reductase |
|
_____________199_____________________223\n_____________|_______________________|\n5'-GCA...GGAAC____AA____GC_______A___AGGAU...GUU-3'\n______________UAUG__GGCU__AGUUGUU_CGA\n______________:|:|__||||__||||:||_|||\n______________GUGC__CCGA__UCAAUAA_GCU\n3'-CGC...UUCAA____AA____AA___________CAACU...AAG-5'\n_____________|_______________________|\n_____________84______________________61\n |
212 -- 218 |
65 -- 71 |
-18.0685 kcal/mol |
2.64248 kcal/mol |
1.62352 kcal/mol |
199 223@LB@ | |@LB@5'-GCA...GGAAC AA GC A AGGAU...GUU-3'@LB@ UAUG GGCU AGUUGUU CGA@LB@ :|:| |||| ||||:|| |||@LB@ GUGC CCGA UCAAUAA GCU@LB@3'-CGC...UUCAA AA AA CAACU...AAG-5'@LB@ | |@LB@ 84 61@LB@@LB@@LB@Energy -13.80 kcal/mol@LB@Hybridization Energy -18.0685 kcal/mol@LB@Unfolding Energy - mRNA 2.64248 kcal/mol@LB@Unfolding Energy - sRNA 1.62352 kcal/mol@LB@@LB@Position - mRNA 200 -- 222@LB@Position - sRNA 62 -- 83@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 141 |
0.02331 |
0.5385 |
b1844 |
exoX |
-7.22 |
0.302733 |
200 -- 217 |
62 -- 83 |
exodeoxyribonuclease 10; DNA exonuclease X |
|
_____________199_____________________218\n_____________|_______________________|\n5'-UUA...CAUGC_______C__A____________UACAG...UGA-3'\n______________CAUGUUG_GC_UUA_____UCGA\n______________||:||||_||_|||_____||||\n______________GUGCAAC_CG_AAU_____AGCU\n3'-CGC...UUCAA__________A___CAAUA____CAACU...AAG-5'\n_____________|_______________________|\n_____________84______________________61\n |
200 -- 206 |
77 -- 83 |
-13.618 kcal/mol |
4.77882 kcal/mol |
1.62352 kcal/mol |
199 218@LB@ | |@LB@5'-UUA...CAUGC C A UACAG...UGA-3'@LB@ CAUGUUG GC UUA UCGA@LB@ ||:|||| || ||| ||||@LB@ GUGCAAC CG AAU AGCU@LB@3'-CGC...UUCAA A CAAUA CAACU...AAG-5'@LB@ | |@LB@ 84 61@LB@@LB@@LB@Energy -7.22 kcal/mol@LB@Hybridization Energy -13.618 kcal/mol@LB@Unfolding Energy - mRNA 4.77882 kcal/mol@LB@Unfolding Energy - sRNA 1.62352 kcal/mol@LB@@LB@Position - mRNA 200 -- 217@LB@Position - sRNA 62 -- 83@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 162 |
0.02861 |
0.5559 |
b0564 |
appY |
-9.53 |
0.127084 |
148 -- 162 |
62 -- 79 |
global transcriptional activator; DLP12 prophage |
b1499 b3515 b4116 b0566 b3516 |
_____________147________________163\n_____________|__________________|\n5'-AAA...UUUAA__________________CUACU...UAA-3'\n______________UUGGUU___GUUAUUUGA\n______________||||:|___||||||:||\n______________AACCGA___CAAUAAGCU\n3'-CGC...AGUGC______AAU_________CAACU...AAG-5'\n_____________|__________________|\n_____________80_________________61\n |
156 -- 162 |
62 -- 68 |
-13.1987 kcal/mol |
2.92728 kcal/mol |
0.737706 kcal/mol |
147 163@LB@ | |@LB@5'-AAA...UUUAA CUACU...UAA-3'@LB@ UUGGUU GUUAUUUGA@LB@ ||||:| ||||||:||@LB@ AACCGA CAAUAAGCU@LB@3'-CGC...AGUGC AAU CAACU...AAG-5'@LB@ | |@LB@ 80 61@LB@@LB@@LB@Energy -9.53 kcal/mol@LB@Hybridization Energy -13.1987 kcal/mol@LB@Unfolding Energy - mRNA 2.92728 kcal/mol@LB@Unfolding Energy - sRNA 0.737706 kcal/mol@LB@@LB@Position - mRNA 148 -- 162@LB@Position - sRNA 62 -- 79@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 62 -- 68@LB@ |
