| 177 |
0.03112 |
0.5559 |
b0080 |
cra |
-12.94 |
0.032158 |
57 -- 78 |
62 -- 84 |
transcriptional repressor-activator for carbon metabolism |
|
_____________56_______________________79\n_____________|________________________|\n5'-GGC...ACAUG_________G____UU________AAUCA...AAA-3'\n______________UCACGUUGG_CUUU__UUG__CGA\n______________|||||||||_||||__||:__|||\n______________AGUGCAACC_GAAA__AAU__GCU\n3'-CGC...UUUCA______________UC___AA___CAACU...AAG-5'\n_____________|________________________|\n_____________85_______________________61\n |
59 -- 65 |
76 -- 82 |
-19.2849 kcal/mol |
4.65103 kcal/mol |
1.6921 kcal/mol |
56 79@LB@ | |@LB@5'-GGC...ACAUG G UU AAUCA...AAA-3'@LB@ UCACGUUGG CUUU UUG CGA@LB@ ||||||||| |||| ||: |||@LB@ AGUGCAACC GAAA AAU GCU@LB@3'-CGC...UUUCA UC AA CAACU...AAG-5'@LB@ | |@LB@ 85 61@LB@@LB@@LB@Energy -12.94 kcal/mol@LB@Hybridization Energy -19.2849 kcal/mol@LB@Unfolding Energy - mRNA 4.65103 kcal/mol@LB@Unfolding Energy - sRNA 1.6921 kcal/mol@LB@@LB@Position - mRNA 57 -- 78@LB@Position - sRNA 62 -- 84@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 178 |
0.03115 |
0.5559 |
b2528 |
iscA |
-9.66 |
0.120899 |
187 -- 207 |
62 -- 80 |
FeS cluster assembly protein |
|
_____________186___________________208\n_____________|_____________________|\n5'-UUC...UAAGA____A_G_________G____UUACA...CCG-3'\n______________GUUG_G_UUUGGUUAU_UCGA\n______________||||_|_|||:|||||_||||\n______________CAAC_C_AAAUCAAUA_AGCU\n3'-CGC...AAGUG______G______________CAACU...AAG-5'\n_____________|_____________________|\n_____________81____________________61\n |
196 -- 202 |
66 -- 72 |
-17.7068 kcal/mol |
7.30815 kcal/mol |
0.737855 kcal/mol |
186 208@LB@ | |@LB@5'-UUC...UAAGA A G G UUACA...CCG-3'@LB@ GUUG G UUUGGUUAU UCGA@LB@ |||| | |||:||||| ||||@LB@ CAAC C AAAUCAAUA AGCU@LB@3'-CGC...AAGUG G CAACU...AAG-5'@LB@ | |@LB@ 81 61@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -17.7068 kcal/mol@LB@Unfolding Energy - mRNA 7.30815 kcal/mol@LB@Unfolding Energy - sRNA 0.737855 kcal/mol@LB@@LB@Position - mRNA 187 -- 207@LB@Position - sRNA 62 -- 80@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 34 |
0.00612 |
0.5385 |
b1837 |
yebW |
-12.39 |
0.040382 |
203 -- 226 |
63 -- 86 |
uncharacterized protein |
|
_____________202______________________227\n_____________|________________________|\n5'-ACC...GAAAU_______C____ACUUU_______CUACC...UGA-3'\n______________GUUCGCG_UGGU_____UUGUUUG\n______________||||:||_|||:_____||:||:|\n______________CAAGUGC_ACCG_____AAUAAGC\n3'-CGC...GUUUU_______A____AAAUC_______UCAAC...AAG-5'\n_____________|________________________|\n_____________87_______________________62\n |
220 -- 226 |
63 -- 69 |
-18.9836 kcal/mol |
4.90011 kcal/mol |
1.69827 kcal/mol |
202 227@LB@ | |@LB@5'-ACC...GAAAU C ACUUU CUACC...UGA-3'@LB@ GUUCGCG UGGU UUGUUUG@LB@ ||||:|| |||: ||:||:|@LB@ CAAGUGC ACCG AAUAAGC@LB@3'-CGC...GUUUU A AAAUC UCAAC...AAG-5'@LB@ | |@LB@ 87 62@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -18.9836 kcal/mol@LB@Unfolding Energy - mRNA 4.90011 kcal/mol@LB@Unfolding Energy - sRNA 1.69827 kcal/mol@LB@@LB@Position - mRNA 203 -- 226@LB@Position - sRNA 63 -- 86@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 83 |
0.01501 |
0.5385 |
b2114 |
metG |
-6.55 |
0.379655 |
47 -- 64 |
63 -- 79 |
methionyl-tRNA synthetase |
|
_____________46_________________65\n_____________|__________________|\n5'-AUU...GUGAU_____CUG__A_______UUCAU...AUG-3'\n______________UUGGC___GG_UUGUUCG\n______________|||||___:|_||:||||\n______________AACCG___UC_AAUAAGC\n3'-CGC...AGUGC_____AAA__________UCAAC...AAG-5'\n_____________|__________________|\n_____________80_________________62\n |
58 -- 64 |
63 -- 69 |
-14.0866 kcal/mol |
6.80006 kcal/mol |
0.735636 kcal/mol |
46 65@LB@ | |@LB@5'-AUU...GUGAU CUG A UUCAU...AUG-3'@LB@ UUGGC GG UUGUUCG@LB@ ||||| :| ||:||||@LB@ AACCG UC AAUAAGC@LB@3'-CGC...AGUGC AAA UCAAC...AAG-5'@LB@ | |@LB@ 80 62@LB@@LB@@LB@Energy -6.55 kcal/mol@LB@Hybridization Energy -14.0866 kcal/mol@LB@Unfolding Energy - mRNA 6.80006 kcal/mol@LB@Unfolding Energy - sRNA 0.735636 kcal/mol@LB@@LB@Position - mRNA 47 -- 64@LB@Position - sRNA 63 -- 79@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 55 |
0.01095 |
0.5385 |
b1220 |
ychO |
-5.56 |
0.517016 |
132 -- 175 |
64 -- 91 |
putative invasin |
|
_____________131__________________________________________176\n_____________|____________________________________________|\n5'-UCA...UACGA________GCCAGUAAU____AUUCUUUAA____A_____U___AUUAU...CAA-3'\n______________CAAAAGUU_________CGUU_________GGCU_UGGUU_UUC\n______________||||||||_________||||_________||||_|:|||_|||\n______________GUUUUCAA_________GCAA_________CCGA_AUCAA_AAG\n3'-CGC...UAGGC________GU________________________A_____U___CUCAA...AAG-5'\n_____________|____________________________________________|\n_____________92___________________________________________63\n |
133 -- 139 |
84 -- 90 |
-16.5622 kcal/mol |
8.12255 kcal/mol |
2.88465 kcal/mol |
131 176@LB@ | |@LB@5'-UCA...UACGA GCCAGUAAU AUUCUUUAA A U AUUAU...CAA-3'@LB@ CAAAAGUU CGUU GGCU UGGUU UUC@LB@ |||||||| |||| |||| |:||| |||@LB@ GUUUUCAA GCAA CCGA AUCAA AAG@LB@3'-CGC...UAGGC GU A U CUCAA...AAG-5'@LB@ | |@LB@ 92 63@LB@@LB@@LB@Energy -5.56 kcal/mol@LB@Hybridization Energy -16.5622 kcal/mol@LB@Unfolding Energy - mRNA 8.12255 kcal/mol@LB@Unfolding Energy - sRNA 2.88465 kcal/mol@LB@@LB@Position - mRNA 132 -- 175@LB@Position - sRNA 64 -- 91@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 79 |
0.01412 |
0.5385 |
b2830 |
rppH |
-5.99 |
0.454649 |
93 -- 100 |
64 -- 71 |
RNA pyrophosphohydrolase |
|
_____________92_______101\n_____________|________|\n5'-UUC...CUGUG________AAUUG...GGC-3'\n______________AGUUAUUC\n______________||||||||\n______________UCAAUAAG\n3'-CGC...CGAAA________CUCAA...AAG-5'\n_____________|________|\n_____________72_______63\n |
94 -- 100 |
64 -- 70 |
-7.84269 kcal/mol |
1.74359 kcal/mol |
0.11296 kcal/mol |
92 101@LB@ | |@LB@5'-UUC...CUGUG AAUUG...GGC-3'@LB@ AGUUAUUC@LB@ ||||||||@LB@ UCAAUAAG@LB@3'-CGC...CGAAA CUCAA...AAG-5'@LB@ | |@LB@ 72 63@LB@@LB@@LB@Energy -5.99 kcal/mol@LB@Hybridization Energy -7.84269 kcal/mol@LB@Unfolding Energy - mRNA 1.74359 kcal/mol@LB@Unfolding Energy - sRNA 0.11296 kcal/mol@LB@@LB@Position - mRNA 93 -- 100@LB@Position - sRNA 64 -- 71@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 89 |
0.01549 |
0.5385 |
b3147 |
lpoA |
-11.44 |
0.059349 |
235 -- 255 |
64 -- 83 |
OM lipoprotein stimulator of MrcA transpeptidase |
|
_____________234___________________256\n_____________|_____________________|\n5'-UAU...AGCCG_______U__GCCU_______UGGCA...AUC-3'\n______________CGCGUUG_CU____GUUGUUC\n______________|:|||||_||____|||:|||\n______________GUGCAAC_GA____CAAUAAG\n3'-CGC...UUCAA_______C__AAU________CUCAA...AAG-5'\n_____________|_____________________|\n_____________84____________________63\n |
249 -- 255 |
64 -- 70 |
-16.9353 kcal/mol |
4.93537 kcal/mol |
0.560651 kcal/mol |
234 256@LB@ | |@LB@5'-UAU...AGCCG U GCCU UGGCA...AUC-3'@LB@ CGCGUUG CU GUUGUUC@LB@ |:||||| || |||:|||@LB@ GUGCAAC GA CAAUAAG@LB@3'-CGC...UUCAA C AAU CUCAA...AAG-5'@LB@ | |@LB@ 84 63@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -16.9353 kcal/mol@LB@Unfolding Energy - mRNA 4.93537 kcal/mol@LB@Unfolding Energy - sRNA 0.560651 kcal/mol@LB@@LB@Position - mRNA 235 -- 255@LB@Position - sRNA 64 -- 83@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 105 |
0.01788 |
0.5385 |
b0619 |
citA |
-6.78 |
0.351941 |
4 -- 24 |
64 -- 89 |
sensory histidine kinase in two-component regulatory system with CitB |
|
_____________3__________________________25\n_____________|__________________________|\n________5'-CAU______AG__________________AUUUA...UCA-3'\n______________AGAGUU_____UGGUUUU__UUAUUU\n______________|:||||_____|||:|||__|||||:\n______________UUUCAA_____ACCGAAA__AAUAAG\n3'-CGC...GGCGU______GUGCA_______UC______CUCAA...AAG-5'\n_____________|__________________________|\n_____________90_________________________63\n |
12 -- 18 |
72 -- 78 |
-10.9037 kcal/mol |
3.54899 kcal/mol |
0.576654 kcal/mol |
3 25@LB@ | |@LB@ 5'-CAU AG AUUUA...UCA-3'@LB@ AGAGUU UGGUUUU UUAUUU@LB@ |:|||| |||:||| |||||:@LB@ UUUCAA ACCGAAA AAUAAG@LB@3'-CGC...GGCGU GUGCA UC CUCAA...AAG-5'@LB@ | |@LB@ 90 63@LB@@LB@@LB@Energy -6.78 kcal/mol@LB@Hybridization Energy -10.9037 kcal/mol@LB@Unfolding Energy - mRNA 3.54899 kcal/mol@LB@Unfolding Energy - sRNA 0.576654 kcal/mol@LB@@LB@Position - mRNA 4 -- 24@LB@Position - sRNA 64 -- 89@LB@Position Seed - mRNA 12 -- 18@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 112 |
0.0191 |
0.5385 |
b0854 |
potF |
-9.27 |
0.140763 |
36 -- 50 |
64 -- 78 |
putrescine ABC transporter periplasmic binding protein |
|
_____________35______________51\n_____________|_______________|\n5'-UAC...AACCC_____AA________UUGCG...ACA-3'\n______________UGGCU__AGUUAUUC\n______________|||||__||||||||\n______________ACCGA__UCAAUAAG\n3'-CGC...GUGCA_____AA________CUCAA...AAG-5'\n_____________|_______________|\n_____________79______________63\n |
44 -- 50 |
64 -- 70 |
-15.0609 kcal/mol |
5.5152 kcal/mol |
0.273858 kcal/mol |
35 51@LB@ | |@LB@5'-UAC...AACCC AA UUGCG...ACA-3'@LB@ UGGCU AGUUAUUC@LB@ ||||| ||||||||@LB@ ACCGA UCAAUAAG@LB@3'-CGC...GUGCA AA CUCAA...AAG-5'@LB@ | |@LB@ 79 63@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -15.0609 kcal/mol@LB@Unfolding Energy - mRNA 5.5152 kcal/mol@LB@Unfolding Energy - sRNA 0.273858 kcal/mol@LB@@LB@Position - mRNA 36 -- 50@LB@Position - sRNA 64 -- 78@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 119 |
0.02023 |
0.5385 |
b3579 |
yiaO |
-11.14 |
0.066893 |
104 -- 124 |
64 -- 84 |
2 3-diketo-L-gulonate-binding periplasmic protein |
|
_____________103_____________________125\n_____________|_______________________|\n5'-ACU...UUCCC______CC_______________AUUAU...AAA-3'\n______________UUACGU__UGGUUUUA__UAUUC\n______________|:||||__|||:||||__|||||\n______________AGUGCA__ACCGAAAU__AUAAG\n3'-CGC...UUUCA________________CA_____CUCAA...AAG-5'\n_____________|_______________________|\n_____________85______________________63\n |
113 -- 119 |
71 -- 77 |
-15.3214 kcal/mol |
3.60448 kcal/mol |
0.573392 kcal/mol |
103 125@LB@ | |@LB@5'-ACU...UUCCC CC AUUAU...AAA-3'@LB@ UUACGU UGGUUUUA UAUUC@LB@ |:|||| |||:|||| |||||@LB@ AGUGCA ACCGAAAU AUAAG@LB@3'-CGC...UUUCA CA CUCAA...AAG-5'@LB@ | |@LB@ 85 63@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -15.3214 kcal/mol@LB@Unfolding Energy - mRNA 3.60448 kcal/mol@LB@Unfolding Energy - sRNA 0.573392 kcal/mol@LB@@LB@Position - mRNA 104 -- 124@LB@Position - sRNA 64 -- 84@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 71 -- 77@LB@ |
