160 |
0.02589 |
0.526 |
b3297 |
rpsK |
-10.33 |
0.083340 |
178 -- 193 |
52 -- 64 |
30S ribosomal subunit protein S11 |
|
_____________177______________194\n_____________|________________|\n5'-CGA...AUCAA______AUC_______UUGAA...CUA-3'\n______________GAAAUA___GGGGUGA\n______________||||||___|||||:|\n______________CUUUAU___CCCCAUU\n3'-UUU...GCCAA________________UGUCU...UCG-5'\n_____________|________________|\n_____________65_______________51\n |
187 -- 193 |
52 -- 58 |
-13.1856 kcal/mol |
2.77978 kcal/mol |
0.0778991 kcal/mol |
177 194@LB@ | |@LB@5'-CGA...AUCAA AUC UUGAA...CUA-3'@LB@ GAAAUA GGGGUGA@LB@ |||||| |||||:|@LB@ CUUUAU CCCCAUU@LB@3'-UUU...GCCAA UGUCU...UCG-5'@LB@ | |@LB@ 65 51@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -13.1856 kcal/mol@LB@Unfolding Energy - mRNA 2.77978 kcal/mol@LB@Unfolding Energy - sRNA 0.0778991 kcal/mol@LB@@LB@Position - mRNA 178 -- 193@LB@Position - sRNA 52 -- 64@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 52 -- 58@LB@ |
159 |
0.02583 |
0.526 |
b2572 |
rseA |
-12.83 |
0.023837 |
184 -- 236 |
1 -- 63 |
anti-sigma factor |
|
_____________183_____________________________________________________________237\n_____________|_______________________________________________________________|\n5'-UCC...AUACU_____A_____U________G__________CA__UUUCCGCU____________________GAAAC...GGG-3'\n______________GGAUA_GGGUA__UAGGCAU_CAGAAA_GAA__AC______________UUAAUGG__AUGGC\n______________::|||_|||||__:||:|||_||||||_|||__||______________||||||:__||:||\n______________UUUAU_CCCAU__GUCUGUA_GUCUUU_CUU__UG______________AAUUACU__UAUCG\n3'-UUU...CCAAC_____C_____UU_______A______A___AC__CCAUUAUUUAUUUC_______AC_____-5'\n_____________|______________________________________________________________|\n_____________64_____________________________________________________________1\n |
225 -- 231 |
8 -- 14 |
-31.1691 kcal/mol |
11.9981 kcal/mol |
6.344 kcal/mol |
183 237@LB@ | |@LB@5'-UCC...AUACU A U G CA UUUCCGCU GAAAC...GGG-3'@LB@ GGAUA GGGUA UAGGCAU CAGAAA GAA AC UUAAUGG AUGGC@LB@ ::||| ||||| :||:||| |||||| ||| || ||||||: ||:||@LB@ UUUAU CCCAU GUCUGUA GUCUUU CUU UG AAUUACU UAUCG@LB@3'-UUU...CCAAC C UU A A AC CCAUUAUUUAUUUC AC -5'@LB@ | |@LB@ 64 1@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -31.1691 kcal/mol@LB@Unfolding Energy - mRNA 11.9981 kcal/mol@LB@Unfolding Energy - sRNA 6.344 kcal/mol@LB@@LB@Position - mRNA 184 -- 236@LB@Position - sRNA 1 -- 63@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 8 -- 14@LB@ |
166 |
0.02659 |
0.526 |
b1580 |
rspB |
-9.76 |
0.108040 |
184 -- 209 |
1 -- 29 |
putative Zn-dependent NAD(P)-binding oxidoreductase |
|
_____________183___________________________210\n_____________|_____________________________|\n5'-AUG...GGAAC______G_______A_______AA_____AUAUU...UUG-3'\n______________UGGUAA_GAGUAAG__UAAUGA____AGC\n______________:|||||_:|:|||:__||||||____|||\n______________GCCAUU_UUUAUUU__AUUACU____UCG\n3'-UUU...UUACU______A_______CA______ACUA___-5'\n_____________|____________________________|\n_____________30___________________________1\n |
191 -- 197 |
16 -- 22 |
-16.0836 kcal/mol |
4.192 kcal/mol |
2.12711 kcal/mol |
183 210@LB@ | |@LB@5'-AUG...GGAAC G A AA AUAUU...UUG-3'@LB@ UGGUAA GAGUAAG UAAUGA AGC@LB@ :||||| :|:|||: |||||| |||@LB@ GCCAUU UUUAUUU AUUACU UCG@LB@3'-UUU...UUACU A CA ACUA -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -9.76 kcal/mol@LB@Hybridization Energy -16.0836 kcal/mol@LB@Unfolding Energy - mRNA 4.192 kcal/mol@LB@Unfolding Energy - sRNA 2.12711 kcal/mol@LB@@LB@Position - mRNA 184 -- 209@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 16 -- 22@LB@ |
98 |
0.01586 |
0.5059 |
b1860 |
ruvB |
-8.95 |
0.154425 |
184 -- 211 |
1 -- 30 |
ATP-dependent DNA helicase component of RuvABC resolvasome |
|
_____________183_____________________________212\n_____________|_______________________________|\n5'-ACG...GCGCC___U__UG_______________U_______AGACC...GUC-3'\n______________GCG_UA__AGGUAAAG__GAUGA_UGA_AGC\n______________:||_||__|::|||||__:||||_|||_|||\n______________UGC_AU__UUUAUUUC__UUACU_ACU_UCG\n3'-UUU...CUUAC___C__UA________AA_________A___-5'\n_____________|______________________________|\n_____________31_____________________________1\n |
193 -- 199 |
15 -- 21 |
-17.0174 kcal/mol |
5.93551 kcal/mol |
2.12822 kcal/mol |
183 212@LB@ | |@LB@5'-ACG...GCGCC U UG U AGACC...GUC-3'@LB@ GCG UA AGGUAAAG GAUGA UGA AGC@LB@ :|| || |::||||| :|||| ||| |||@LB@ UGC AU UUUAUUUC UUACU ACU UCG@LB@3'-UUU...CUUAC C UA AA A -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -8.95 kcal/mol@LB@Hybridization Energy -17.0174 kcal/mol@LB@Unfolding Energy - mRNA 5.93551 kcal/mol@LB@Unfolding Energy - sRNA 2.12822 kcal/mol@LB@@LB@Position - mRNA 184 -- 211@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 15 -- 21@LB@ |
32 |
0.003146 |
0.3086 |
b1553 |
rzpQ |
-12.95 |
0.022283 |
187 -- 223 |
23 -- 60 |
Rz-like protein Qin prophage |
|
_____________186______________________________________224\n_____________|________________________________________|\n5'-UAU...CCUGC______AUA______UGAA_____UAUUC___________UUUUC...GUG-3'\n______________UGGGGG___GAACAG____UCAGA________AUGGUGAU\n______________|:||||___:|||||____|||||________|:|||:||\n______________AUCCCC___UUUGUC____AGUCU________UGCCAUUA\n3'-UUU...ACUUU______A________UGUA_____UUACUUAC________UUUAU...UCG-5'\n_____________|________________________________________|\n_____________61_______________________________________22\n |
217 -- 223 |
23 -- 29 |
-27.4351 kcal/mol |
8.1631 kcal/mol |
6.31885 kcal/mol |
186 224@LB@ | |@LB@5'-UAU...CCUGC AUA UGAA UAUUC UUUUC...GUG-3'@LB@ UGGGGG GAACAG UCAGA AUGGUGAU@LB@ |:|||| :||||| ||||| |:|||:||@LB@ AUCCCC UUUGUC AGUCU UGCCAUUA@LB@3'-UUU...ACUUU A UGUA UUACUUAC UUUAU...UCG-5'@LB@ | |@LB@ 61 22@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -27.4351 kcal/mol@LB@Unfolding Energy - mRNA 8.1631 kcal/mol@LB@Unfolding Energy - sRNA 6.31885 kcal/mol@LB@@LB@Position - mRNA 187 -- 223@LB@Position - sRNA 23 -- 60@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 23 -- 29@LB@ |
16 |
0.0008012 |
0.1482 |
b2011 |
sbcB |
-16.25 |
0.003318 |
186 -- 217 |
24 -- 52 |
exodeoxyribonuclease I; exonuclease I |
|
_____________185______________________________218\n_____________|________________________________|\n5'-CCU...GAAAU_______UUAACCUAAU_______________GCAAC...CCA-3'\n______________AACGGAU__________GAUGAAUGACGGUAA\n______________|||:||:__________:||||||||||||||\n______________UUGUCUG__________UUACUUACUGCCAUU\n3'-UUU...CCCAU_______UAAGUCU__________________AUUUA...UCG-5'\n_____________|________________________________|\n_____________53_______________________________23\n |
211 -- 217 |
24 -- 30 |
-27.0341 kcal/mol |
4.49086 kcal/mol |
6.2974 kcal/mol |
185 218@LB@ | |@LB@5'-CCU...GAAAU UUAACCUAAU GCAAC...CCA-3'@LB@ AACGGAU GAUGAAUGACGGUAA@LB@ |||:||: :||||||||||||||@LB@ UUGUCUG UUACUUACUGCCAUU@LB@3'-UUU...CCCAU UAAGUCU AUUUA...UCG-5'@LB@ | |@LB@ 53 23@LB@@LB@@LB@Energy -16.25 kcal/mol@LB@Hybridization Energy -27.0341 kcal/mol@LB@Unfolding Energy - mRNA 4.49086 kcal/mol@LB@Unfolding Energy - sRNA 6.2974 kcal/mol@LB@@LB@Position - mRNA 186 -- 217@LB@Position - sRNA 24 -- 52@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 24 -- 30@LB@ |
7 |
0.0001529 |
0.07172 |
b0687 |
seqA |
-15.48 |
0.005290 |
212 -- 226 |
5 -- 19 |
negative modulator of initiation of replication |
|
_____________211_____________227\n_____________|_______________|\n5'-GGA...ACGAU_______________ACUCU...UGA-3'\n______________UGAAGUUGAUGAUGA\n______________|:|||||:|||||||\n______________AUUUCAAUUACUACU\n3'-UUU...UAUUU_______________AUCG-5'\n_____________|_______________|\n_____________20______________4\n |
220 -- 226 |
5 -- 11 |
-18.3215 kcal/mol |
2.77487 kcal/mol |
0.0620344 kcal/mol |
211 227@LB@ | |@LB@5'-GGA...ACGAU ACUCU...UGA-3'@LB@ UGAAGUUGAUGAUGA@LB@ |:|||||:|||||||@LB@ AUUUCAAUUACUACU@LB@3'-UUU...UAUUU AUCG-5'@LB@ | |@LB@ 20 4@LB@@LB@@LB@Energy -15.48 kcal/mol@LB@Hybridization Energy -18.3215 kcal/mol@LB@Unfolding Energy - mRNA 2.77487 kcal/mol@LB@Unfolding Energy - sRNA 0.0620344 kcal/mol@LB@@LB@Position - mRNA 212 -- 226@LB@Position - sRNA 5 -- 19@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 5 -- 11@LB@ |
100 |
0.01591 |
0.5059 |
b0531 |
sfmC |
-11.86 |
0.039421 |
211 -- 227 |
6 -- 22 |
putative periplasmic pilus chaperone |
b4316 |
_____________210_______________228\n_____________|_________________|\n5'-AAU...GACUA___________U_____CUCAU...GUA-3'\n______________AAAUAAAGUUA_UGAUG\n______________|||||||||||_|||||\n______________UUUAUUUCAAU_ACUAC\n3'-UUU...CAUUA___________U_____UAUCG-5'\n_____________|_________________|\n_____________23________________5\n |
215 -- 221 |
12 -- 18 |
-15.888 kcal/mol |
3.9302 kcal/mol |
0.0976382 kcal/mol |
210 228@LB@ | |@LB@5'-AAU...GACUA U CUCAU...GUA-3'@LB@ AAAUAAAGUUA UGAUG@LB@ ||||||||||| |||||@LB@ UUUAUUUCAAU ACUAC@LB@3'-UUU...CAUUA U UAUCG-5'@LB@ | |@LB@ 23 5@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -15.888 kcal/mol@LB@Unfolding Energy - mRNA 3.9302 kcal/mol@LB@Unfolding Energy - sRNA 0.0976382 kcal/mol@LB@@LB@Position - mRNA 211 -- 227@LB@Position - sRNA 6 -- 22@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 12 -- 18@LB@ |
116 |
0.01846 |
0.5155 |
b3349 |
slyD |
-11.19 |
0.055067 |
245 -- 274 |
8 -- 47 |
FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) |
|
_____________244______________________________________275\n_____________|________________________________________|\n5'-UGU...CAGGU____A__________________UGUU_____________GUCUC...ACU-3'\n______________ACGU_CAGAA______GACGGUG________GGUUGAUGA\n______________||:|_|||||______||||||:________:|||:||||\n______________UGUA_GUCUU______CUGCCAU________UCAAUUACU\n3'-UUU...UUGUC____A_____UACUUA_______UAUUUAUU_________ACUAUCG-5'\n_____________|________________________________________|\n_____________48_______________________________________7\n |
268 -- 274 |
8 -- 14 |
-23.1983 kcal/mol |
5.6913 kcal/mol |
6.31565 kcal/mol |
244 275@LB@ | |@LB@5'-UGU...CAGGU A UGUU GUCUC...ACU-3'@LB@ ACGU CAGAA GACGGUG GGUUGAUGA@LB@ ||:| ||||| ||||||: :|||:||||@LB@ UGUA GUCUU CUGCCAU UCAAUUACU@LB@3'-UUU...UUGUC A UACUUA UAUUUAUU ACUAUCG-5'@LB@ | |@LB@ 48 7@LB@@LB@@LB@Energy -11.19 kcal/mol@LB@Hybridization Energy -23.1983 kcal/mol@LB@Unfolding Energy - mRNA 5.6913 kcal/mol@LB@Unfolding Energy - sRNA 6.31565 kcal/mol@LB@@LB@Position - mRNA 245 -- 274@LB@Position - sRNA 8 -- 47@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 8 -- 14@LB@ |
12 |
0.000426 |
0.1165 |
b2331 |
smrB |
-16.71 |
0.002472 |
163 -- 205 |
16 -- 57 |
putative DNA endonuclease |
|
_____________162____________________________________________206\n_____________|______________________________________________|\n5'-UCA...GAGUC________UGUA___AAA________A______A____________AAAGA...GAC-3'\n______________GGGUAAAC____GGA___UUAGAAAU_GA_GAC___GAUAAAUGAA\n______________||||||||____:||___|:||||||_:|_|||___:||||||:||\n______________CCCAUUUG____UCU___AGUCUUUA_UU_CUG___UUAUUUAUUU\n3'-UUU...UUAUC_______________GUA________C__A___CCA__________CAAUU...UCG-5'\n_____________|______________________________________________|\n_____________58_____________________________________________15\n |
199 -- 205 |
16 -- 22 |
-27.8577 kcal/mol |
4.82255 kcal/mol |
6.32306 kcal/mol |
162 206@LB@ | |@LB@5'-UCA...GAGUC UGUA AAA A A AAAGA...GAC-3'@LB@ GGGUAAAC GGA UUAGAAAU GA GAC GAUAAAUGAA@LB@ |||||||| :|| |:|||||| :| ||| :||||||:||@LB@ CCCAUUUG UCU AGUCUUUA UU CUG UUAUUUAUUU@LB@3'-UUU...UUAUC GUA C A CCA CAAUU...UCG-5'@LB@ | |@LB@ 58 15@LB@@LB@@LB@Energy -16.71 kcal/mol@LB@Hybridization Energy -27.8577 kcal/mol@LB@Unfolding Energy - mRNA 4.82255 kcal/mol@LB@Unfolding Energy - sRNA 6.32306 kcal/mol@LB@@LB@Position - mRNA 163 -- 205@LB@Position - sRNA 16 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 16 -- 22@LB@ |