38 |
0.003831 |
0.3287 |
b3739 |
atpI |
-13.67 |
0.015109 |
253 -- 271 |
1 -- 16 |
ATP synthase membrane-bound accessory factor |
|
_____________252_________________272\n_____________|___________________|\n5'-GAA...CGUUC_____CUG___________AAGUG...ACC-3'\n______________AGUUA___GUGGUGAUAGC\n______________|||||___:||:|||||||\n______________UCAAU___UACUACUAUCG\n3'-UUU...UUAUU___________________-5'\n_____________|__________________|\n_____________17_________________1\n |
265 -- 271 |
1 -- 7 |
-18.239 kcal/mol |
4.52285 kcal/mol |
0.0492804 kcal/mol |
252 272@LB@ | |@LB@5'-GAA...CGUUC CUG AAGUG...ACC-3'@LB@ AGUUA GUGGUGAUAGC@LB@ ||||| :||:|||||||@LB@ UCAAU UACUACUAUCG@LB@3'-UUU...UUAUU -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -13.67 kcal/mol@LB@Hybridization Energy -18.239 kcal/mol@LB@Unfolding Energy - mRNA 4.52285 kcal/mol@LB@Unfolding Energy - sRNA 0.0492804 kcal/mol@LB@@LB@Position - mRNA 253 -- 271@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 1 -- 7@LB@ |
104 |
0.01633 |
0.5059 |
b3057 |
bacA |
-10.04 |
0.095309 |
188 -- 194 |
54 -- 60 |
undecaprenyl pyrophosphate phosphatase |
|
_____________187_____195\n_____________|_______|\n5'-UUC...UAAUU_______UUAUU...UUG-3'\n______________UAGGGGU\n______________|||||||\n______________AUCCCCA\n3'-UUU...ACUUU_______UUUGU...UCG-5'\n_____________|_______|\n_____________61______53\n |
188 -- 194 |
54 -- 60 |
-11.2865 kcal/mol |
1.18126 kcal/mol |
0.0661814 kcal/mol |
187 195@LB@ | |@LB@5'-UUC...UAAUU UUAUU...UUG-3'@LB@ UAGGGGU@LB@ |||||||@LB@ AUCCCCA@LB@3'-UUU...ACUUU UUUGU...UCG-5'@LB@ | |@LB@ 61 53@LB@@LB@@LB@Energy -10.04 kcal/mol@LB@Hybridization Energy -11.2865 kcal/mol@LB@Unfolding Energy - mRNA 1.18126 kcal/mol@LB@Unfolding Energy - sRNA 0.0661814 kcal/mol@LB@@LB@Position - mRNA 188 -- 194@LB@Position - sRNA 54 -- 60@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 54 -- 60@LB@ |
192 |
0.03268 |
0.5507 |
b3532 |
bcsB |
-10.41 |
0.080313 |
186 -- 199 |
1 -- 12 |
regulator of cellulose synthase cyclic di-GMP binding |
|
_____________185____________200\n_____________|______________|\n5'-AAG...UCAAC__________AC__GAUGA...UCA-3'\n______________AAUGAUGAUA__GC\n______________||||||||||__||\n______________UUACUACUAU__CG\n3'-UUU...UUCAA______________-5'\n_____________|_____________|\n_____________13____________1\n |
189 -- 195 |
3 -- 9 |
-11.9692 kcal/mol |
1.52301 kcal/mol |
0.0394463 kcal/mol |
185 200@LB@ | |@LB@5'-AAG...UCAAC AC GAUGA...UCA-3'@LB@ AAUGAUGAUA GC@LB@ |||||||||| ||@LB@ UUACUACUAU CG@LB@3'-UUU...UUCAA -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -11.9692 kcal/mol@LB@Unfolding Energy - mRNA 1.52301 kcal/mol@LB@Unfolding Energy - sRNA 0.0394463 kcal/mol@LB@@LB@Position - mRNA 186 -- 199@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 3 -- 9@LB@ |
45 |
0.005107 |
0.3601 |
b0435 |
bolA |
-10.01 |
0.096403 |
160 -- 209 |
3 -- 59 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________159________________________________________________________210\n_____________|__________________________________________________________|\n5'-UGA...UUUAA____A___________C____CGU______U___AGG______UUUC___________CGUGA...CCG-3'\n______________AGGG_UGGAU_GACAU_UCAG_______UG_CGG____AGAUA______AUGAUGAUA\n______________||||_|::|:_|||||_||||_______||_|||____|:|||______|||||||||\n______________UCCC_AUUUG_CUGUA_AGUC_______AC_GCC____UUUAU______UACUACUAU\n3'-UUU...CUUUA____C_____U__________UUUACUU__U___AUUA_____UUCAAU_________CG-5'\n_____________|__________________________________________________________|\n_____________60_________________________________________________________2\n |
203 -- 209 |
3 -- 9 |
-31.3101 kcal/mol |
14.9582 kcal/mol |
6.33762 kcal/mol |
159 210@LB@ | |@LB@5'-UGA...UUUAA A C CGU U AGG UUUC CGUGA...CCG-3'@LB@ AGGG UGGAU GACAU UCAG UG CGG AGAUA AUGAUGAUA@LB@ |||| |::|: ||||| |||| || ||| |:||| |||||||||@LB@ UCCC AUUUG CUGUA AGUC AC GCC UUUAU UACUACUAU@LB@3'-UUU...CUUUA C U UUUACUU U AUUA UUCAAU CG-5'@LB@ | |@LB@ 60 2@LB@@LB@@LB@Energy -10.01 kcal/mol@LB@Hybridization Energy -31.3101 kcal/mol@LB@Unfolding Energy - mRNA 14.9582 kcal/mol@LB@Unfolding Energy - sRNA 6.33762 kcal/mol@LB@@LB@Position - mRNA 160 -- 209@LB@Position - sRNA 3 -- 59@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 3 -- 9@LB@ |
134 |
0.02184 |
0.526 |
b0034 |
caiF |
-11.03 |
0.059446 |
251 -- 259 |
1 -- 9 |
cai operon transcriptional activator |
|
_____________250_______260\n_____________|_________|\n5'-UGA...GAAUG_________UGAAA...AUU-3'\n______________GAUGAUGGC\n______________||||||:||\n______________CUACUAUCG\n3'-UUU...AAUUA_________-5'\n_____________|________|\n_____________10_______1\n |
253 -- 259 |
1 -- 7 |
-13.9707 kcal/mol |
2.91573 kcal/mol |
0.0200155 kcal/mol |
250 260@LB@ | |@LB@5'-UGA...GAAUG UGAAA...AUU-3'@LB@ GAUGAUGGC@LB@ ||||||:||@LB@ CUACUAUCG@LB@3'-UUU...AAUUA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -13.9707 kcal/mol@LB@Unfolding Energy - mRNA 2.91573 kcal/mol@LB@Unfolding Energy - sRNA 0.0200155 kcal/mol@LB@@LB@Position - mRNA 251 -- 259@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 1 -- 7@LB@ |
123 |
0.01951 |
0.5155 |
b0032 |
carA |
-10.10 |
0.092857 |
258 -- 264 |
55 -- 61 |
carbamoyl phosphate synthetase small subunit glutamine amidotransferase |
|
_____________257_____265\n_____________|_______|\n5'-UUG...GGGCC_______CAACA...AUA-3'\n______________AUAGGGG\n______________|||||||\n______________UAUCCCC\n3'-UUU...AACUU_______AUUUG...UCG-5'\n_____________|_______|\n_____________62______54\n |
258 -- 264 |
55 -- 61 |
-10.8319 kcal/mol |
0.710423 kcal/mol |
0.0258473 kcal/mol |
257 265@LB@ | |@LB@5'-UUG...GGGCC CAACA...AUA-3'@LB@ AUAGGGG@LB@ |||||||@LB@ UAUCCCC@LB@3'-UUU...AACUU AUUUG...UCG-5'@LB@ | |@LB@ 62 54@LB@@LB@@LB@Energy -10.10 kcal/mol@LB@Hybridization Energy -10.8319 kcal/mol@LB@Unfolding Energy - mRNA 0.710423 kcal/mol@LB@Unfolding Energy - sRNA 0.0258473 kcal/mol@LB@@LB@Position - mRNA 258 -- 264@LB@Position - sRNA 55 -- 61@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 55 -- 61@LB@ |
183 |
0.03025 |
0.5427 |
b0999 |
cbpM |
-7.72 |
0.255487 |
289 -- 296 |
53 -- 60 |
modulator of CbpA co-chaperone |
|
_____________288______297\n_____________|________|\n5'-AUC...CGGUU________GUUG-3'\n______________UGGGGGUG\n______________|:|||||:\n______________AUCCCCAU\n3'-UUU...ACUUU________UUGUC...UCG-5'\n_____________|________|\n_____________61_______52\n |
290 -- 296 |
53 -- 59 |
-12.779 kcal/mol |
4.99203 kcal/mol |
0.0710089 kcal/mol |
288 297@LB@ | |@LB@5'-AUC...CGGUU GUUG-3'@LB@ UGGGGGUG@LB@ |:|||||:@LB@ AUCCCCAU@LB@3'-UUU...ACUUU UUGUC...UCG-5'@LB@ | |@LB@ 61 52@LB@@LB@@LB@Energy -7.72 kcal/mol@LB@Hybridization Energy -12.779 kcal/mol@LB@Unfolding Energy - mRNA 4.99203 kcal/mol@LB@Unfolding Energy - sRNA 0.0710089 kcal/mol@LB@@LB@Position - mRNA 289 -- 296@LB@Position - sRNA 53 -- 60@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 53 -- 59@LB@ |
94 |
0.01566 |
0.5059 |
b3918 |
cdh |
-10.38 |
0.081442 |
225 -- 238 |
1 -- 14 |
CDP-diacylglycerol phosphotidylhydrolase |
|
_____________224____________239\n_____________|______________|\n5'-AUU...UUUUU______________UAUCG...CAU-3'\n______________UUGGUGAUGAUAGU\n______________||::|||||||||:\n______________AAUUACUACUAUCG\n3'-UUU...AUUUC______________-5'\n_____________|_____________|\n_____________15____________1\n |
232 -- 238 |
1 -- 7 |
-16.1883 kcal/mol |
5.76383 kcal/mol |
0.0473494 kcal/mol |
224 239@LB@ | |@LB@5'-AUU...UUUUU UAUCG...CAU-3'@LB@ UUGGUGAUGAUAGU@LB@ ||::|||||||||:@LB@ AAUUACUACUAUCG@LB@3'-UUU...AUUUC -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -10.38 kcal/mol@LB@Hybridization Energy -16.1883 kcal/mol@LB@Unfolding Energy - mRNA 5.76383 kcal/mol@LB@Unfolding Energy - sRNA 0.0473494 kcal/mol@LB@@LB@Position - mRNA 225 -- 238@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 1 -- 7@LB@ |
136 |
0.02238 |
0.526 |
b1883 |
cheB |
-10.46 |
0.078180 |
185 -- 206 |
1 -- 23 |
fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA |
|
_____________184______________________207\n_____________|________________________|\n5'-GGG...UGCGC_________A____C_________AAAAU...CGA-3'\n______________UAAGUAAGG_UUAA_GAUGA__GC\n______________|||:|||:|_||||_|||||__||\n______________AUUUAUUUC_AAUU_CUACU__CG\n3'-UUU...CCAUU______________A_____AU__-5'\n_____________|_______________________|\n_____________24______________________1\n |
187 -- 193 |
15 -- 21 |
-15.1436 kcal/mol |
4.57462 kcal/mol |
0.105066 kcal/mol |
184 207@LB@ | |@LB@5'-GGG...UGCGC A C AAAAU...CGA-3'@LB@ UAAGUAAGG UUAA GAUGA GC@LB@ |||:|||:| |||| ||||| ||@LB@ AUUUAUUUC AAUU CUACU CG@LB@3'-UUU...CCAUU A AU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -15.1436 kcal/mol@LB@Unfolding Energy - mRNA 4.57462 kcal/mol@LB@Unfolding Energy - sRNA 0.105066 kcal/mol@LB@@LB@Position - mRNA 185 -- 206@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 15 -- 21@LB@ |
99 |
0.01587 |
0.5059 |
b2155 |
cirA |
-12.92 |
0.022646 |
275 -- 290 |
1 -- 16 |
colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter |
|
_____________274______________291\n_____________|________________|\n5'-GGA...UUAGC___C____________GAAAC...UGG-3'\n______________GGU_GAUGAUGAUGGC\n______________:||_:||||||||:||\n______________UCA_UUACUACUAUCG\n3'-UUU...UUAUU___A____________-5'\n_____________|_______________|\n_____________17______________1\n |
284 -- 290 |
1 -- 7 |
-19.8516 kcal/mol |
6.87927 kcal/mol |
0.0492804 kcal/mol |
274 291@LB@ | |@LB@5'-GGA...UUAGC C GAAAC...UGG-3'@LB@ GGU GAUGAUGAUGGC@LB@ :|| :||||||||:||@LB@ UCA UUACUACUAUCG@LB@3'-UUU...UUAUU A -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -19.8516 kcal/mol@LB@Unfolding Energy - mRNA 6.87927 kcal/mol@LB@Unfolding Energy - sRNA 0.0492804 kcal/mol@LB@@LB@Position - mRNA 275 -- 290@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 1 -- 7@LB@ |