| 67 |
0.009794 |
0.4523 |
b2823 |
ppdC |
-12.40 |
0.029910 |
245 -- 275 |
3 -- 28 |
putative prepilin peptidase-dependent protein |
|
_____________244_____________________________276\n_____________|_______________________________|\n5'-ACG...CCGGA_______UUGGC_____U_____________AUUGU...UCC-3'\n______________GGUAAUG_____GAUGG_GUUGAUGGUGAUG\n______________||||||:_____:||::_|||:|||:||||:\n______________CCAUUAU_____UUAUU_CAAUUACUACUAU\n3'-UUU...UACUG_________________U_____________CG-5'\n_____________|_______________________________|\n_____________29______________________________2\n |
269 -- 275 |
3 -- 9 |
-21.5159 kcal/mol |
8.35299 kcal/mol |
0.766561 kcal/mol |
244 276@LB@ | |@LB@5'-ACG...CCGGA UUGGC U AUUGU...UCC-3'@LB@ GGUAAUG GAUGG GUUGAUGGUGAUG@LB@ ||||||: :||:: |||:|||:||||:@LB@ CCAUUAU UUAUU CAAUUACUACUAU@LB@3'-UUU...UACUG U CG-5'@LB@ | |@LB@ 29 2@LB@@LB@@LB@Energy -12.40 kcal/mol@LB@Hybridization Energy -21.5159 kcal/mol@LB@Unfolding Energy - mRNA 8.35299 kcal/mol@LB@Unfolding Energy - sRNA 0.766561 kcal/mol@LB@@LB@Position - mRNA 245 -- 275@LB@Position - sRNA 3 -- 28@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 173 |
0.02817 |
0.531 |
b0952 |
pqiC |
-7.60 |
0.267291 |
63 -- 71 |
1 -- 9 |
DUF330 family putative lipoprotein |
|
_____________62________72\n_____________|_________|\n5'-ACG...AACAA_________GGAUA...GCG-3'\n______________GAUGGUGGC\n______________||||:|:||\n______________CUACUAUCG\n3'-UUU...AAUUA_________-5'\n_____________|________|\n_____________10_______1\n |
65 -- 71 |
1 -- 7 |
-13.4268 kcal/mol |
5.80912 kcal/mol |
0.0200155 kcal/mol |
62 72@LB@ | |@LB@5'-ACG...AACAA GGAUA...GCG-3'@LB@ GAUGGUGGC@LB@ ||||:|:||@LB@ CUACUAUCG@LB@3'-UUU...AAUUA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.60 kcal/mol@LB@Hybridization Energy -13.4268 kcal/mol@LB@Unfolding Energy - mRNA 5.80912 kcal/mol@LB@Unfolding Energy - sRNA 0.0200155 kcal/mol@LB@@LB@Position - mRNA 63 -- 71@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 78 |
0.01113 |
0.4523 |
b2678 |
proW |
-13.08 |
0.020853 |
190 -- 200 |
49 -- 59 |
glycine betaine/proline ABC transporter permease |
|
_____________189_________201\n_____________|___________|\n5'-GUU...CGUGA___________AUGGC...ACG-3'\n______________GGGGGUAAAUA\n______________:||||||||:|\n______________UCCCCAUUUGU\n3'-UUU...CUUUA___________CUGUA...UCG-5'\n_____________|___________|\n_____________60__________48\n |
194 -- 200 |
49 -- 55 |
-15.0309 kcal/mol |
1.22377 kcal/mol |
0.730523 kcal/mol |
189 201@LB@ | |@LB@5'-GUU...CGUGA AUGGC...ACG-3'@LB@ GGGGGUAAAUA@LB@ :||||||||:|@LB@ UCCCCAUUUGU@LB@3'-UUU...CUUUA CUGUA...UCG-5'@LB@ | |@LB@ 60 48@LB@@LB@@LB@Energy -13.08 kcal/mol@LB@Hybridization Energy -15.0309 kcal/mol@LB@Unfolding Energy - mRNA 1.22377 kcal/mol@LB@Unfolding Energy - sRNA 0.730523 kcal/mol@LB@@LB@Position - mRNA 190 -- 200@LB@Position - sRNA 49 -- 59@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 28 |
0.00198 |
0.2275 |
b2821 |
ptrA |
-8.02 |
0.226801 |
174 -- 191 |
5 -- 22 |
protease III |
|
_____________173________________192\n_____________|__________________|\n5'-GCU...ACAGA____U________U____GGUCC...CCA-3'\n______________AAAU_AAGUUGAU_AUGA\n______________||||_|||||:||_||||\n______________UUUA_UUCAAUUA_UACU\n3'-UUU...CAUUA____U________C____AUCG-5'\n_____________|__________________|\n_____________23_________________4\n |
180 -- 186 |
10 -- 16 |
-10.4485 kcal/mol |
2.32937 kcal/mol |
0.0977783 kcal/mol |
173 192@LB@ | |@LB@5'-GCU...ACAGA U U GGUCC...CCA-3'@LB@ AAAU AAGUUGAU AUGA@LB@ |||| |||||:|| ||||@LB@ UUUA UUCAAUUA UACU@LB@3'-UUU...CAUUA U C AUCG-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -8.02 kcal/mol@LB@Hybridization Energy -10.4485 kcal/mol@LB@Unfolding Energy - mRNA 2.32937 kcal/mol@LB@Unfolding Energy - sRNA 0.0977783 kcal/mol@LB@@LB@Position - mRNA 174 -- 191@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 184 |
0.03077 |
0.549 |
b1101 |
ptsG |
-13.95 |
0.012872 |
39 -- 58 |
1 -- 19 |
fused glucose-specific PTS enzymes: IIB component/IIC component |
|
_____________38___________________59\n_____________|____________________|\n5'-CAU...UGAUC_________AAC________CGUCA...GUU-3'\n______________UGAAGUUGA___GUGAUAGC\n______________|:|||||:|___:|||||||\n______________AUUUCAAUU___UACUAUCG\n3'-UUU...UAUUU_________AC_________-5'\n_____________|___________________|\n_____________20__________________1\n |
52 -- 58 |
1 -- 7 |
-17.415 kcal/mol |
3.39679 kcal/mol |
0.0638423 kcal/mol |
38 59@LB@ | |@LB@5'-CAU...UGAUC AAC CGUCA...GUU-3'@LB@ UGAAGUUGA GUGAUAGC@LB@ |:|||||:| :|||||||@LB@ AUUUCAAUU UACUAUCG@LB@3'-UUU...UAUUU AC -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -13.95 kcal/mol@LB@Hybridization Energy -17.415 kcal/mol@LB@Unfolding Energy - mRNA 3.39679 kcal/mol@LB@Unfolding Energy - sRNA 0.0638423 kcal/mol@LB@@LB@Position - mRNA 39 -- 58@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 106 |
0.01645 |
0.5059 |
b2416 |
ptsI |
-13.93 |
0.013056 |
96 -- 143 |
1 -- 59 |
PEP-protein phosphotransferase of PTS system (enzyme I) |
|
_____________95__________________________________________________________144\n_____________|___________________________________________________________|\n5'-GUG...GCAGA___CGA_________AG_________________UGAACAUCU______AC________GGAAC...CCG-3'\n______________AGG_______AGACG__CAGAAA______GCGGU_________GGUUAA___UGAUGGC\n______________|||_______||||:__||||||______:||||_________:|||||___||||:||\n______________UCC_______UCUGU__GUCUUU______UGCCA_________UCAAUU___ACUAUCG\n3'-UUU...CUUUA___CCAUUUG_____AA______ACUUAC_____UUAUUUAUU______ACU_______-5'\n_____________|__________________________________________________________|\n_____________60_________________________________________________________1\n |
137 -- 143 |
1 -- 7 |
-30.8595 kcal/mol |
10.5928 kcal/mol |
6.33764 kcal/mol |
95 144@LB@ | |@LB@5'-GUG...GCAGA CGA AG UGAACAUCU AC GGAAC...CCG-3'@LB@ AGG AGACG CAGAAA GCGGU GGUUAA UGAUGGC@LB@ ||| ||||: |||||| :|||| :||||| ||||:||@LB@ UCC UCUGU GUCUUU UGCCA UCAAUU ACUAUCG@LB@3'-UUU...CUUUA CCAUUUG AA ACUUAC UUAUUUAUU ACU -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -13.93 kcal/mol@LB@Hybridization Energy -30.8595 kcal/mol@LB@Unfolding Energy - mRNA 10.5928 kcal/mol@LB@Unfolding Energy - sRNA 6.33764 kcal/mol@LB@@LB@Position - mRNA 96 -- 143@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 70 |
0.01004 |
0.4523 |
b1658 |
purR |
-15.06 |
0.006831 |
174 -- 223 |
1 -- 65 |
transcriptional repressor hypoxanthine-binding |
|
_____________173________________________________________________________________224\n_____________|__________________________________________________________________|\n5'-UUU...GGAGC______UA____C______GU_________G_______AAC______A__________________GAAAC...GCA-3'\n______________UGAAGU__GGGU___UGGA______GAAAU_GAAUGGC___AAUAAA__________GAUG_UAGC\n______________||||:|__||||___::||______|||||_|||||:|___||||||__________||||_||||\n______________ACUUUA__CCCA___GUCU______CUUUA_CUUACUG___UUAUUU__________CUAC_AUCG\n3'-UUU...GGCCA______UC____UUU____GUAAGU_____________CCA______AUUUCAAUUA____U____-5'\n_____________|_________________________________________________________________|\n_____________66________________________________________________________________1\n |
199 -- 205 |
29 -- 35 |
-29.7477 kcal/mol |
7.45199 kcal/mol |
7.23987 kcal/mol |
173 224@LB@ | |@LB@5'-UUU...GGAGC UA C GU G AAC A GAAAC...GCA-3'@LB@ UGAAGU GGGU UGGA GAAAU GAAUGGC AAUAAA GAUG UAGC@LB@ ||||:| |||| ::|| ||||| |||||:| |||||| |||| ||||@LB@ ACUUUA CCCA GUCU CUUUA CUUACUG UUAUUU CUAC AUCG@LB@3'-UUU...GGCCA UC UUU GUAAGU CCA AUUUCAAUUA U -5'@LB@ | |@LB@ 66 1@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -29.7477 kcal/mol@LB@Unfolding Energy - mRNA 7.45199 kcal/mol@LB@Unfolding Energy - sRNA 7.23987 kcal/mol@LB@@LB@Position - mRNA 174 -- 223@LB@Position - sRNA 1 -- 65@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 36 |
0.003415 |
0.3114 |
b1849 |
purT |
-10.41 |
0.080237 |
8 -- 43 |
29 -- 56 |
phosphoribosylglycinamide formyltransferase 2 |
|
_____________7_____________________________________44\n_____________|_____________________________________|\n____5'-UUUUGCU_______________UCUCUUCGCCCUCAC_______UACGU...GUC-3'\n______________GGUAAAC_GACAUUU_______________GAAUGAC\n______________|||||||_||||||:_______________|||||||\n______________CCAUUUG_CUGUAAG_______________CUUACUG\n3'-UUU...UAUCC_______U_______UCUUUA________________CCAUU...UCG-5'\n_____________|_____________________________________|\n_____________57____________________________________28\n |
37 -- 43 |
29 -- 35 |
-21.896 kcal/mol |
5.20104 kcal/mol |
6.28612 kcal/mol |
7 44@LB@ | |@LB@ 5'-UUUUGCU UCUCUUCGCCCUCAC UACGU...GUC-3'@LB@ GGUAAAC GACAUUU GAAUGAC@LB@ ||||||| ||||||: |||||||@LB@ CCAUUUG CUGUAAG CUUACUG@LB@3'-UUU...UAUCC U UCUUUA CCAUU...UCG-5'@LB@ | |@LB@ 57 28@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -21.896 kcal/mol@LB@Unfolding Energy - mRNA 5.20104 kcal/mol@LB@Unfolding Energy - sRNA 6.28612 kcal/mol@LB@@LB@Position - mRNA 8 -- 43@LB@Position - sRNA 29 -- 56@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 25 |
0.00149 |
0.1957 |
b4244 |
pyrI |
-16.22 |
0.003374 |
188 -- 229 |
11 -- 59 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________187_________________________________________________230\n_____________|___________________________________________________|\n5'-UUC...CUGUA__________________________CAC___A________UGC_______AGCUA...UCA-3'\n______________AGGGG_AAAUAGA________GAUGA___ACG_UAAUAAAU___AGGUUGA\n______________|||||_|||:|||________:||||___|||_||||||||___|:|||:|\n______________UCCCC_UUUGUCU________UUACU___UGC_AUUAUUUA___UUCAAUU\n3'-UUU...CUUUA_____A_______GUAAGUCU_____UAC___C________U_________ACUAC...UCG-5'\n_____________|___________________________________________________|\n_____________60__________________________________________________10\n |
223 -- 229 |
11 -- 17 |
-28.8643 kcal/mol |
6.31236 kcal/mol |
6.33314 kcal/mol |
187 230@LB@ | |@LB@5'-UUC...CUGUA CAC A UGC AGCUA...UCA-3'@LB@ AGGGG AAAUAGA GAUGA ACG UAAUAAAU AGGUUGA@LB@ ||||| |||:||| :|||| ||| |||||||| |:|||:|@LB@ UCCCC UUUGUCU UUACU UGC AUUAUUUA UUCAAUU@LB@3'-UUU...CUUUA A GUAAGUCU UAC C U ACUAC...UCG-5'@LB@ | |@LB@ 60 10@LB@@LB@@LB@Energy -16.22 kcal/mol@LB@Hybridization Energy -28.8643 kcal/mol@LB@Unfolding Energy - mRNA 6.31236 kcal/mol@LB@Unfolding Energy - sRNA 6.33314 kcal/mol@LB@@LB@Position - mRNA 188 -- 229@LB@Position - sRNA 11 -- 59@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 42 |
0.004307 |
0.3367 |
b4051 |
qorA |
-12.29 |
0.031673 |
118 -- 140 |
3 -- 26 |
quinone oxidoreductase NADPH-dependent |
|
_____________117______________________141\n_____________|________________________|\n5'-CGC...UGCCA_______________CC_______AAGAA...UCG-3'\n______________UAGUGAAUGGAGUUA__GA_GAUA\n______________||:|:|||::|||||__||_||||\n______________AUUAUUUAUUUCAAU__CU_CUAU\n3'-UUU...CUGCC_______________UA__A____CG-5'\n_____________|________________________|\n_____________27_______________________2\n |
126 -- 132 |
12 -- 18 |
-16.4059 kcal/mol |
3.53962 kcal/mol |
0.580109 kcal/mol |
117 141@LB@ | |@LB@5'-CGC...UGCCA CC AAGAA...UCG-3'@LB@ UAGUGAAUGGAGUUA GA GAUA@LB@ ||:|:|||::||||| || ||||@LB@ AUUAUUUAUUUCAAU CU CUAU@LB@3'-UUU...CUGCC UA A CG-5'@LB@ | |@LB@ 27 2@LB@@LB@@LB@Energy -12.29 kcal/mol@LB@Hybridization Energy -16.4059 kcal/mol@LB@Unfolding Energy - mRNA 3.53962 kcal/mol@LB@Unfolding Energy - sRNA 0.580109 kcal/mol@LB@@LB@Position - mRNA 118 -- 140@LB@Position - sRNA 3 -- 26@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 12 -- 18@LB@ |
