| 194 |
0.03269 |
0.5507 |
b2049 |
cpsB |
-9.94 |
0.099932 |
179 -- 235 |
1 -- 54 |
mannose-1-phosphate guanyltransferase |
|
_____________178________________________________________________________236\n_____________|__________________________________________________________|\n5'-ACA...AUUUA___________________AAUU______CA__CGAAACUCUAUCC___U________AGGUG...GCC-3'\n______________UAAAU_GAUAUUCGGGGAU____AUGGCG__GU_____________AGU_GUGAUGGC\n______________||||:_||:||||:|::||____|||:||__||_____________|:|_:||||:||\n______________AUUUG_CUGUAAGUCUUUA____UACUGC__CA_____________UUA_UACUAUCG\n3'-UUU...UCCCC_____U_____________CU____________UUAUUUAUUUCAA___C________-5'\n_____________|_________________________________________________________|\n_____________55________________________________________________________1\n |
229 -- 235 |
1 -- 7 |
-30.0746 kcal/mol |
13.8011 kcal/mol |
6.33758 kcal/mol |
178 236@LB@ | |@LB@5'-ACA...AUUUA AAUU CA CGAAACUCUAUCC U AGGUG...GCC-3'@LB@ UAAAU GAUAUUCGGGGAU AUGGCG GU AGU GUGAUGGC@LB@ ||||: ||:||||:|::|| |||:|| || |:| :||||:||@LB@ AUUUG CUGUAAGUCUUUA UACUGC CA UUA UACUAUCG@LB@3'-UUU...UCCCC U CU UUAUUUAUUUCAA C -5'@LB@ | |@LB@ 55 1@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -30.0746 kcal/mol@LB@Unfolding Energy - mRNA 13.8011 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 179 -- 235@LB@Position - sRNA 1 -- 54@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 175 |
0.0283 |
0.531 |
b2048 |
cpsG |
-16.42 |
0.002969 |
89 -- 138 |
17 -- 58 |
phosphomannomutase |
|
_____________88___________________________________________________139\n_____________|____________________________________________________|\n5'-GGG...CGGAC___U_______UC_________C________CGAAACC______________CGACA...GCG-3'\n______________GGG_GUAAACG__GCA_UCAGG_AAUGAAUG_______GCGGU_GUAAAUAA\n______________|||_||||||:__:||_||||:_||||||||_______:||||_:|||||||\n______________CCC_CAUUUGU__UGU_AGUCU_UUACUUAC_______UGCCA_UAUUUAUU\n3'-UUU...UUUAU___________C____A__________________________U________UCAAU...UCG-5'\n_____________|____________________________________________________|\n_____________59___________________________________________________16\n |
132 -- 138 |
17 -- 23 |
-37.1596 kcal/mol |
14.4139 kcal/mol |
6.32276 kcal/mol |
88 139@LB@ | |@LB@5'-GGG...CGGAC U UC C CGAAACC CGACA...GCG-3'@LB@ GGG GUAAACG GCA UCAGG AAUGAAUG GCGGU GUAAAUAA@LB@ ||| ||||||: :|| ||||: |||||||| :|||| :|||||||@LB@ CCC CAUUUGU UGU AGUCU UUACUUAC UGCCA UAUUUAUU@LB@3'-UUU...UUUAU C A U UCAAU...UCG-5'@LB@ | |@LB@ 59 16@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -37.1596 kcal/mol@LB@Unfolding Energy - mRNA 14.4139 kcal/mol@LB@Unfolding Energy - sRNA 6.32276 kcal/mol@LB@@LB@Position - mRNA 89 -- 138@LB@Position - sRNA 17 -- 58@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 60 |
0.008489 |
0.4523 |
b3912 |
cpxR |
-10.34 |
0.082729 |
218 -- 229 |
5 -- 16 |
response regulator in two-component regulatory system with CpxA |
|
_____________217__________230\n_____________|____________|\n5'-UGA...CUGUU____________CCGAG...AUG-3'\n______________AGUUGAUGAUGA\n______________||||:|||||||\n______________UCAAUUACUACU\n3'-UUU...UUAUU____________AUCG-5'\n_____________|____________|\n_____________17___________4\n |
223 -- 229 |
5 -- 11 |
-14.1725 kcal/mol |
3.78244 kcal/mol |
0.0462955 kcal/mol |
217 230@LB@ | |@LB@5'-UGA...CUGUU CCGAG...AUG-3'@LB@ AGUUGAUGAUGA@LB@ ||||:|||||||@LB@ UCAAUUACUACU@LB@3'-UUU...UUAUU AUCG-5'@LB@ | |@LB@ 17 4@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -14.1725 kcal/mol@LB@Unfolding Energy - mRNA 3.78244 kcal/mol@LB@Unfolding Energy - sRNA 0.0462955 kcal/mol@LB@@LB@Position - mRNA 218 -- 229@LB@Position - sRNA 5 -- 16@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 20 |
0.0009027 |
0.1482 |
b2696 |
csrA |
-13.42 |
0.017327 |
268 -- 280 |
48 -- 60 |
pleiotropic regulatory protein for carbon source metabolism |
|
_____________267___________281\n_____________|_____________|\n5'-CGG...AGUUU__________G__CAACC...GCG-3'\n______________UAGGGGUAAA_GG\n______________||||||||||_:|\n______________AUCCCCAUUU_UC\n3'-UUU...ACUUU__________G__UGUAA...UCG-5'\n_____________|_____________|\n_____________61____________47\n |
271 -- 277 |
51 -- 57 |
-17.9026 kcal/mol |
2.43021 kcal/mol |
2.05446 kcal/mol |
267 281@LB@ | |@LB@5'-CGG...AGUUU G CAACC...GCG-3'@LB@ UAGGGGUAAA GG@LB@ |||||||||| :|@LB@ AUCCCCAUUU UC@LB@3'-UUU...ACUUU G UGUAA...UCG-5'@LB@ | |@LB@ 61 47@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -17.9026 kcal/mol@LB@Unfolding Energy - mRNA 2.43021 kcal/mol@LB@Unfolding Energy - sRNA 2.05446 kcal/mol@LB@@LB@Position - mRNA 268 -- 280@LB@Position - sRNA 48 -- 60@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 112 |
0.01793 |
0.5155 |
b1418 |
cybB |
-10.08 |
0.093429 |
125 -- 145 |
33 -- 57 |
cytochrome b561 |
|
_____________124_______________________146\n_____________|_________________________|\n5'-AAC...AAAAC_________________________AUUUU...UCC-3'\n______________GGGUGAACA_AUAUUU___AAUGAA\n______________||||:||||_|:|||:___||||||\n______________CCCAUUUGU_UGUAAG___UUACUU\n3'-UUU...UUAUC_________C______UCU______ACUGC...UCG-5'\n_____________|_________________________|\n_____________58________________________32\n |
127 -- 133 |
49 -- 55 |
-19.5073 kcal/mol |
3.1607 kcal/mol |
6.2643 kcal/mol |
124 146@LB@ | |@LB@5'-AAC...AAAAC AUUUU...UCC-3'@LB@ GGGUGAACA AUAUUU AAUGAA@LB@ ||||:|||| |:|||: ||||||@LB@ CCCAUUUGU UGUAAG UUACUU@LB@3'-UUU...UUAUC C UCU ACUGC...UCG-5'@LB@ | |@LB@ 58 32@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -19.5073 kcal/mol@LB@Unfolding Energy - mRNA 3.1607 kcal/mol@LB@Unfolding Energy - sRNA 6.2643 kcal/mol@LB@@LB@Position - mRNA 125 -- 145@LB@Position - sRNA 33 -- 57@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 155 |
0.02521 |
0.526 |
b4208 |
cycA |
-8.71 |
0.171102 |
175 -- 207 |
24 -- 51 |
D-alanine/D-serine/glycine transporter |
|
_____________174________________________________208\n_____________|__________________________________|\n5'-AUU...ACAAC_______GGUA__________AAAAAC_______AUCAG...UUG-3'\n______________ACAGACA____CAGGAA_GAA______AUGGUAG\n______________|||||||____|||:||_|||______|:||||:\n______________UGUCUGU____GUCUUU_CUU______UGCCAUU\n3'-UUU...CCAUU_______AA________A___AC___________AUUUA...UCG-5'\n_____________|__________________________________|\n_____________52_________________________________23\n |
201 -- 207 |
24 -- 30 |
-19.5671 kcal/mol |
4.55835 kcal/mol |
6.29692 kcal/mol |
174 208@LB@ | |@LB@5'-AUU...ACAAC GGUA AAAAAC AUCAG...UUG-3'@LB@ ACAGACA CAGGAA GAA AUGGUAG@LB@ ||||||| |||:|| ||| |:||||:@LB@ UGUCUGU GUCUUU CUU UGCCAUU@LB@3'-UUU...CCAUU AA A AC AUUUA...UCG-5'@LB@ | |@LB@ 52 23@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -19.5671 kcal/mol@LB@Unfolding Energy - mRNA 4.55835 kcal/mol@LB@Unfolding Energy - sRNA 6.29692 kcal/mol@LB@@LB@Position - mRNA 175 -- 207@LB@Position - sRNA 24 -- 51@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 22 |
0.001016 |
0.1516 |
b0734 |
cydB |
-13.57 |
0.015928 |
285 -- 300 |
49 -- 64 |
cytochrome d terminal oxidase subunit II |
|
_____________284_____________300\n_____________|_______________|\n5'-CGA...GUUUC__C_____________-3'\n______________GA_AUGGGGGUGGGCA\n______________||_||:|||||:::||\n______________CU_UAUCCCCAUUUGU\n3'-UUU...GCCAA__U_____________CUGUA...UCG-5'\n_____________|________________|\n_____________65_______________48\n |
294 -- 300 |
49 -- 55 |
-19.142 kcal/mol |
4.83222 kcal/mol |
0.738518 kcal/mol |
284 300@LB@ | |@LB@5'-CGA...GUUUC C -3'@LB@ GA AUGGGGGUGGGCA@LB@ || ||:|||||:::||@LB@ CU UAUCCCCAUUUGU@LB@3'-UUU...GCCAA U CUGUA...UCG-5'@LB@ | |@LB@ 65 48@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -19.142 kcal/mol@LB@Unfolding Energy - mRNA 4.83222 kcal/mol@LB@Unfolding Energy - sRNA 0.738518 kcal/mol@LB@@LB@Position - mRNA 285 -- 300@LB@Position - sRNA 49 -- 64@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 88 |
0.01388 |
0.5059 |
b3809 |
dapF |
-7.53 |
0.274407 |
192 -- 207 |
1 -- 17 |
diaminopimelate epimerase |
|
_____________191_______________208\n_____________|_________________|\n5'-UCU...GAUUG____A_______C____UCUCG...UGG-3'\n______________GAGU_AAUGAUG__AGU\n______________:|||_|||||||__||:\n______________UUCA_UUACUAC__UCG\n3'-UUU...UUUAU____A_______UA___-5'\n_____________|________________|\n_____________18_______________1\n |
197 -- 203 |
6 -- 12 |
-9.99588 kcal/mol |
2.41483 kcal/mol |
0.0529402 kcal/mol |
191 208@LB@ | |@LB@5'-UCU...GAUUG A C UCUCG...UGG-3'@LB@ GAGU AAUGAUG AGU@LB@ :||| ||||||| ||:@LB@ UUCA UUACUAC UCG@LB@3'-UUU...UUUAU A UA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -7.53 kcal/mol@LB@Hybridization Energy -9.99588 kcal/mol@LB@Unfolding Energy - mRNA 2.41483 kcal/mol@LB@Unfolding Energy - sRNA 0.0529402 kcal/mol@LB@@LB@Position - mRNA 192 -- 207@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 37 |
0.00362 |
0.3212 |
b4479 |
dgoR |
-15.45 |
0.005416 |
239 -- 256 |
41 -- 57 |
D-galactonate catabolism operon transcriptional repressor |
|
_____________238________________257\n_____________|__________________|\n5'-UUU...ACGCU___________U______CGGCA...AAC-3'\n______________GGGUAAACAGA_CGUUCA\n______________|||||||||||_|:||||\n______________CCCAUUUGUCU_GUAAGU\n3'-UUU...UUAUC__________________CUUUA...UCG-5'\n_____________|__________________|\n_____________58_________________40\n |
243 -- 249 |
47 -- 53 |
-24.0794 kcal/mol |
2.38777 kcal/mol |
6.24592 kcal/mol |
238 257@LB@ | |@LB@5'-UUU...ACGCU U CGGCA...AAC-3'@LB@ GGGUAAACAGA CGUUCA@LB@ ||||||||||| |:||||@LB@ CCCAUUUGUCU GUAAGU@LB@3'-UUU...UUAUC CUUUA...UCG-5'@LB@ | |@LB@ 58 40@LB@@LB@@LB@Energy -15.45 kcal/mol@LB@Hybridization Energy -24.0794 kcal/mol@LB@Unfolding Energy - mRNA 2.38777 kcal/mol@LB@Unfolding Energy - sRNA 6.24592 kcal/mol@LB@@LB@Position - mRNA 239 -- 256@LB@Position - sRNA 41 -- 57@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 110 |
0.01732 |
0.5155 |
b1800 |
dmlA |
-11.31 |
0.051964 |
127 -- 183 |
1 -- 58 |
D-malate oxidase NAD-dependent; putative tartrate dehydrogenase |
|
_____________126___________________________________________________________184\n_____________|_____________________________________________________________|\n5'-GGU...GUUAC____AUU___UCCUU_____UCAAUUAUAG__________UU______C___UU_______CAGGA...GCU-3'\n______________GGGG___AAU_____UUCAG__________GAUGGUGAUG______GU_AAU__UGAUGGU\n______________||||___||:_____|||||__________||:|||:||:______||_|||__||||:|:\n______________CCCC___UUG_____AAGUC__________CUGCCAUUAU______CA_UUA__ACUAUCG\n3'-UUU...UUUAU____AU____UCUGU_____UUUACUUA____________UUAUUU__A___CU_______-5'\n_____________|____________________________________________________________|\n_____________59___________________________________________________________1\n |
177 -- 183 |
1 -- 7 |
-30.6237 kcal/mol |
12.9772 kcal/mol |
6.33758 kcal/mol |
126 184@LB@ | |@LB@5'-GGU...GUUAC AUU UCCUU UCAAUUAUAG UU C UU CAGGA...GCU-3'@LB@ GGGG AAU UUCAG GAUGGUGAUG GU AAU UGAUGGU@LB@ |||| ||: ||||| ||:|||:||: || ||| ||||:|:@LB@ CCCC UUG AAGUC CUGCCAUUAU CA UUA ACUAUCG@LB@3'-UUU...UUUAU AU UCUGU UUUACUUA UUAUUU A CU -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -11.31 kcal/mol@LB@Hybridization Energy -30.6237 kcal/mol@LB@Unfolding Energy - mRNA 12.9772 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 127 -- 183@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 1 -- 7@LB@ |
