8 |
0.0001978 |
0.08119 |
b3391 |
hofQ |
-22.13 |
0.000045 |
16 -- 73 |
27 -- 88 |
DNA catabolic putative fimbrial transporter |
|
_____________15________________________________________________________________74\n_____________|_________________________________________________________________|\n5'-CUA...AUGGU___G__________C_____AU____GU_____AA____________AA_________C______GUGCA...UAG-3'\n______________AGG_CGAG_GCGAG_GCAUC__CGGU___AAUA_____AGACGGGCA___AGAAAUGG__GACGG\n______________|::_|||:_|||||_|||||__||||___||||_____|:||:|:||___|||||||:__|||||\n______________UUU_GCUU_CGCUC_CGUAG__GCCA___UUAU_____UUUGUCUGU___UCUUUACU__CUGCC\n______3'-UUUUU___G____A_________________ACU____CCCCA_________AAG________UA_____AUUAU...UCG-5'\n_____________|_________________________________________________________________|\n_____________89________________________________________________________________26\n |
60 -- 66 |
35 -- 41 |
-51.8767 kcal/mol |
10.3742 kcal/mol |
19.3742 kcal/mol |
15 74@LB@ | |@LB@5'-CUA...AUGGU G C AU GU AA AA C GUGCA...UAG-3'@LB@ AGG CGAG GCGAG GCAUC CGGU AAUA AGACGGGCA AGAAAUGG GACGG@LB@ |:: |||: ||||| ||||| |||| |||| |:||:|:|| |||||||: |||||@LB@ UUU GCUU CGCUC CGUAG GCCA UUAU UUUGUCUGU UCUUUACU CUGCC@LB@ 3'-UUUUU G A ACU CCCCA AAG UA AUUAU...UCG-5'@LB@ | |@LB@ 89 26@LB@@LB@@LB@Energy -22.13 kcal/mol@LB@Hybridization Energy -51.8767 kcal/mol@LB@Unfolding Energy - mRNA 10.3742 kcal/mol@LB@Unfolding Energy - sRNA 19.3742 kcal/mol@LB@@LB@Position - mRNA 16 -- 73@LB@Position - sRNA 27 -- 88@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 35 -- 41@LB@ |
33 |
0.003163 |
0.3086 |
b4372 |
holD |
-10.86 |
0.064637 |
82 -- 98 |
44 -- 58 |
DNA polymerase III psi subunit |
|
_____________81________________99\n_____________|_________________|\n5'-AGG...UUGCC_______AU________GGAAU...UCC-3'\n______________GGGGUAA__GCAGACAU\n______________|||||||__:|||||||\n______________CCCCAUU__UGUCUGUA\n3'-UUU...UUUAU_________________AGUCU...UCG-5'\n_____________|_________________|\n_____________59________________43\n |
92 -- 98 |
44 -- 50 |
-21.4924 kcal/mol |
4.96784 kcal/mol |
5.66232 kcal/mol |
81 99@LB@ | |@LB@5'-AGG...UUGCC AU GGAAU...UCC-3'@LB@ GGGGUAA GCAGACAU@LB@ ||||||| :|||||||@LB@ CCCCAUU UGUCUGUA@LB@3'-UUU...UUUAU AGUCU...UCG-5'@LB@ | |@LB@ 59 43@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -21.4924 kcal/mol@LB@Unfolding Energy - mRNA 4.96784 kcal/mol@LB@Unfolding Energy - sRNA 5.66232 kcal/mol@LB@@LB@Position - mRNA 82 -- 98@LB@Position - sRNA 44 -- 58@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 44 -- 50@LB@ |
122 |
0.01943 |
0.5155 |
b1842 |
holE |
-10.27 |
0.085496 |
209 -- 257 |
4 -- 63 |
DNA polymerase III theta subunit |
|
_____________208____________________________________________________________258\n_____________|______________________________________________________________|\n5'-GUC...CUGAA____CU__C_____U___U__AA_____________________________G____UC___UUGGC...UGC-3'\n______________GAAU__GG_UAAAC_GGA_CA__CAGAAAUG_____________GAUAAAGU_AAUG__GAU\n______________:|||__||_|||||_:||_||__||||||||_____________:|||||||_||||__|||\n______________UUUA__CC_AUUUG_UCU_GU__GUCUUUAC_____________UUAUUUCA_UUAC__CUA\n3'-UUU...CCAAC____UC__C____________AA________UUACUGCCAUUAU________A____UA___UCG-5'\n_____________|______________________________________________________________|\n_____________64_____________________________________________________________3\n |
241 -- 247 |
14 -- 20 |
-26.5551 kcal/mol |
9.93779 kcal/mol |
6.34398 kcal/mol |
208 258@LB@ | |@LB@5'-GUC...CUGAA CU C U U AA G UC UUGGC...UGC-3'@LB@ GAAU GG UAAAC GGA CA CAGAAAUG GAUAAAGU AAUG GAU@LB@ :||| || ||||| :|| || |||||||| :||||||| |||| |||@LB@ UUUA CC AUUUG UCU GU GUCUUUAC UUAUUUCA UUAC CUA@LB@3'-UUU...CCAAC UC C AA UUACUGCCAUUAU A UA UCG-5'@LB@ | |@LB@ 64 3@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -26.5551 kcal/mol@LB@Unfolding Energy - mRNA 9.93779 kcal/mol@LB@Unfolding Energy - sRNA 6.34398 kcal/mol@LB@@LB@Position - mRNA 209 -- 257@LB@Position - sRNA 4 -- 63@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 14 -- 20@LB@ |
14 |
0.0005823 |
0.1358 |
b4348 |
hsdS |
-17.02 |
0.002033 |
190 -- 210 |
27 -- 58 |
specificity determinant for hsdM and hsdR |
|
_____________189______________________________211\n_____________|________________________________|\n5'-CUG...UUGGU________________________________GGAAA...UAA-3'\n______________GGGGUGA__________AGGAAUGAGUG_CGG\n______________|||||:|__________||:|||||:||_|||\n______________CCCCAUU__________UCUUUACUUAC_GCC\n3'-UUU...UUUAU_______UGUCUGUAAG___________U___AUUAU...UCG-5'\n_____________|________________________________|\n_____________59_______________________________26\n |
190 -- 196 |
52 -- 58 |
-27.0928 kcal/mol |
3.78881 kcal/mol |
6.28755 kcal/mol |
189 211@LB@ | |@LB@5'-CUG...UUGGU GGAAA...UAA-3'@LB@ GGGGUGA AGGAAUGAGUG CGG@LB@ |||||:| ||:|||||:|| |||@LB@ CCCCAUU UCUUUACUUAC GCC@LB@3'-UUU...UUUAU UGUCUGUAAG U AUUAU...UCG-5'@LB@ | |@LB@ 59 26@LB@@LB@@LB@Energy -17.02 kcal/mol@LB@Hybridization Energy -27.0928 kcal/mol@LB@Unfolding Energy - mRNA 3.78881 kcal/mol@LB@Unfolding Energy - sRNA 6.28755 kcal/mol@LB@@LB@Position - mRNA 190 -- 210@LB@Position - sRNA 27 -- 58@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 52 -- 58@LB@ |
187 |
0.03165 |
0.5492 |
b2717 |
hycI |
-9.48 |
0.123006 |
243 -- 251 |
1 -- 9 |
protease involved in processing C-terminal end of HycE |
|
_____________242_______252\n_____________|_________|\n5'-AGC...UGGGC_________GCAGG...ACU-3'\n______________GAUGAUGGC\n______________||||||:||\n______________CUACUAUCG\n3'-UUU...AAUUA_________-5'\n_____________|________|\n_____________10_______1\n |
245 -- 251 |
1 -- 7 |
-13.2104 kcal/mol |
3.71514 kcal/mol |
0.0200155 kcal/mol |
242 252@LB@ | |@LB@5'-AGC...UGGGC GCAGG...ACU-3'@LB@ GAUGAUGGC@LB@ ||||||:||@LB@ CUACUAUCG@LB@3'-UUU...AAUUA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -13.2104 kcal/mol@LB@Unfolding Energy - mRNA 3.71514 kcal/mol@LB@Unfolding Energy - sRNA 0.0200155 kcal/mol@LB@@LB@Position - mRNA 243 -- 251@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 1 -- 7@LB@ |
10 |
0.0003219 |
0.1057 |
b2727 |
hypB |
-18.91 |
0.000562 |
181 -- 230 |
1 -- 53 |
GTP hydrolase involved in nickel liganding into hydrogenases |
|
_____________180____________________________________________________231\n_____________|______________________________________________________|\n5'-GCC...GAUAG_____________________C____U___CAAC___C_____C______A___AACCU...CGG-3'\n______________AAAUAGAC___CAGGAGUGAG_GAUG_GUA____AUG_GGUUG__GGUGA_GGC\n______________|||:||||___|||:|:|||:_||:|_|||____||:_:|||:__|:|||_:||\n______________UUUGUCUG___GUCUUUACUU_CUGC_CAU____UAU_UCAAU__CUACU_UCG\n3'-UUU...CCCCA________UAA__________A________UAUU___U_____UA_____A___-5'\n_____________|_____________________________________________________|\n_____________54____________________________________________________1\n |
182 -- 188 |
46 -- 52 |
-37.7845 kcal/mol |
12.539 kcal/mol |
6.33709 kcal/mol |
180 231@LB@ | |@LB@5'-GCC...GAUAG C U CAAC C C A AACCU...CGG-3'@LB@ AAAUAGAC CAGGAGUGAG GAUG GUA AUG GGUUG GGUGA GGC@LB@ |||:|||| |||:|:|||: ||:| ||| ||: :|||: |:||| :||@LB@ UUUGUCUG GUCUUUACUU CUGC CAU UAU UCAAU CUACU UCG@LB@3'-UUU...CCCCA UAA A UAUU U UA A -5'@LB@ | |@LB@ 54 1@LB@@LB@@LB@Energy -18.91 kcal/mol@LB@Hybridization Energy -37.7845 kcal/mol@LB@Unfolding Energy - mRNA 12.539 kcal/mol@LB@Unfolding Energy - sRNA 6.33709 kcal/mol@LB@@LB@Position - mRNA 181 -- 230@LB@Position - sRNA 1 -- 53@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 46 -- 52@LB@ |
41 |
0.004182 |
0.3349 |
b3771 |
ilvD |
-12.17 |
0.033695 |
175 -- 200 |
14 -- 53 |
dihydroxyacid dehydratase |
|
_____________174______________________________________201\n_____________|________________________________________|\n5'-GCG...UUACG_________C_________________GA___________AUGCC...GUA-3'\n______________AGACAGACA_______________UGG__GUAAAUAAAGU\n______________|:|||||||_______________:||__:||||||||||\n______________UUUGUCUGU_______________GCC__UAUUUAUUUCA\n3'-UUU...CCCCA_________AAGUCUUUACUUACU___AU___________AUUAC...UCG-5'\n_____________|________________________________________|\n_____________54_______________________________________13\n |
194 -- 200 |
14 -- 20 |
-22.054 kcal/mol |
3.56189 kcal/mol |
6.32552 kcal/mol |
174 201@LB@ | |@LB@5'-GCG...UUACG C GA AUGCC...GUA-3'@LB@ AGACAGACA UGG GUAAAUAAAGU@LB@ |:||||||| :|| :||||||||||@LB@ UUUGUCUGU GCC UAUUUAUUUCA@LB@3'-UUU...CCCCA AAGUCUUUACUUACU AU AUUAC...UCG-5'@LB@ | |@LB@ 54 13@LB@@LB@@LB@Energy -12.17 kcal/mol@LB@Hybridization Energy -22.054 kcal/mol@LB@Unfolding Energy - mRNA 3.56189 kcal/mol@LB@Unfolding Energy - sRNA 6.32552 kcal/mol@LB@@LB@Position - mRNA 175 -- 200@LB@Position - sRNA 14 -- 53@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 14 -- 20@LB@ |
108 |
0.01698 |
0.5123 |
b0078 |
ilvH |
-10.97 |
0.061484 |
141 -- 180 |
1 -- 51 |
acetolactate synthase 3 small subunit valine-sensitive |
|
_____________140_________________________________________________181\n_____________|___________________________________________________|\n5'-GCC...CCGAU______UCG___________________________AU_______UA____AAAAC...UGA-3'\n______________GCAGAU___CGGG_______GGCGG_AAUGGAUGAA____GUGGU___AGC\n______________:||||:___|:|:_______|:|||_|||::||:||____:||:|___|||\n______________UGUCUG___GUCU_______CUGCC_UUAUUUAUUU____UACUA___UCG\n3'-UUU...CCAUU______UAA____UUACUUA_____A__________CAAU_____CUA___-5'\n_____________|__________________________________________________|\n_____________52_________________________________________________1\n |
162 -- 168 |
16 -- 22 |
-27.7823 kcal/mol |
10.4814 kcal/mol |
6.33528 kcal/mol |
140 181@LB@ | |@LB@5'-GCC...CCGAU UCG AU UA AAAAC...UGA-3'@LB@ GCAGAU CGGG GGCGG AAUGGAUGAA GUGGU AGC@LB@ :||||: |:|: |:||| |||::||:|| :||:| |||@LB@ UGUCUG GUCU CUGCC UUAUUUAUUU UACUA UCG@LB@3'-UUU...CCAUU UAA UUACUUA A CAAU CUA -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -10.97 kcal/mol@LB@Hybridization Energy -27.7823 kcal/mol@LB@Unfolding Energy - mRNA 10.4814 kcal/mol@LB@Unfolding Energy - sRNA 6.33528 kcal/mol@LB@@LB@Position - mRNA 141 -- 180@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 16 -- 22@LB@ |
161 |
0.02632 |
0.526 |
b3670 |
ilvN |
-9.27 |
0.134814 |
179 -- 196 |
49 -- 65 |
acetolactate synthase 1 small subunit |
|
_____________178________________197\n_____________|__________________|\n5'-UCA...AAUAC________U___GG____AGCCA...CUU-3'\n______________UGAAAUGG_GGG__AAUA\n______________||||||:|_|||__||:|\n______________ACUUUAUC_CCC__UUGU\n3'-UUU...GGCCA____________AU____CUGUA...UCG-5'\n_____________|__________________|\n_____________66_________________48\n |
180 -- 186 |
58 -- 64 |
-15.3061 kcal/mol |
4.40463 kcal/mol |
1.63404 kcal/mol |
178 197@LB@ | |@LB@5'-UCA...AAUAC U GG AGCCA...CUU-3'@LB@ UGAAAUGG GGG AAUA@LB@ ||||||:| ||| ||:|@LB@ ACUUUAUC CCC UUGU@LB@3'-UUU...GGCCA AU CUGUA...UCG-5'@LB@ | |@LB@ 66 48@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -15.3061 kcal/mol@LB@Unfolding Energy - mRNA 4.40463 kcal/mol@LB@Unfolding Energy - sRNA 1.63404 kcal/mol@LB@@LB@Position - mRNA 179 -- 196@LB@Position - sRNA 49 -- 65@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 58 -- 64@LB@ |
81 |
0.01129 |
0.4523 |
b1718 |
infC |
-12.35 |
0.030679 |
105 -- 150 |
1 -- 56 |
translation initiation factor IF-3 |
|
_____________104______________________________________________________151\n_____________|________________________________________________________|\n5'-UUG...GCCGU___________C________GCAUG__________________GAUC_________UGCAA...AGC-3'\n______________GGUAA__AGAC___UGGGAA_____GACG____UAAAUGAAGU____GA_GA_AGC\n______________|||||__||||___::|:||_____||||____|||||:||||____||_||_|||\n______________CCAUU__UCUG___GUCUUU_____CUGC____AUUUAUUUCA____CU_CU_UCG\n3'-UUU...UAUCC_____UG____UAA______ACUUA____CAUU__________AUUA__A__A___-5'\n_____________|_______________________________________________________|\n_____________57______________________________________________________1\n |
133 -- 139 |
14 -- 20 |
-27.0853 kcal/mol |
8.40012 kcal/mol |
6.33758 kcal/mol |
104 151@LB@ | |@LB@5'-UUG...GCCGU C GCAUG GAUC UGCAA...AGC-3'@LB@ GGUAA AGAC UGGGAA GACG UAAAUGAAGU GA GA AGC@LB@ ||||| |||| ::|:|| |||| |||||:|||| || || |||@LB@ CCAUU UCUG GUCUUU CUGC AUUUAUUUCA CU CU UCG@LB@3'-UUU...UAUCC UG UAA ACUUA CAUU AUUA A A -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -27.0853 kcal/mol@LB@Unfolding Energy - mRNA 8.40012 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 105 -- 150@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 14 -- 20@LB@ |