| 18 |
0.003137 |
0.5385 |
b1824 |
yobF |
-13.30 |
0.027752 |
169 -- 188 |
14 -- 35 |
DUF2527 family heat-induced protein |
|
_____________168____________________189\n_____________|______________________|\n5'-GCC...UAACA________________C_____ACAGU...UGU-3'\n______________GAUUUC__GGGUUAAA_GAGGU\n______________||:|||__||||||||_|||||\n______________CUGAAG__CCCAAUUU_CUCCA\n3'-CGC...CGUCA______UU________U_____CGGCG...AAG-5'\n_____________|______________________|\n_____________36_____________________13\n |
176 -- 182 |
20 -- 26 |
-23.4961 kcal/mol |
6.86312 kcal/mol |
3.33183 kcal/mol |
168 189@LB@ | |@LB@5'-GCC...UAACA C ACAGU...UGU-3'@LB@ GAUUUC GGGUUAAA GAGGU@LB@ ||:||| |||||||| |||||@LB@ CUGAAG CCCAAUUU CUCCA@LB@3'-CGC...CGUCA UU U CGGCG...AAG-5'@LB@ | |@LB@ 36 13@LB@@LB@@LB@Energy -13.30 kcal/mol@LB@Hybridization Energy -23.4961 kcal/mol@LB@Unfolding Energy - mRNA 6.86312 kcal/mol@LB@Unfolding Energy - sRNA 3.33183 kcal/mol@LB@@LB@Position - mRNA 169 -- 188@LB@Position - sRNA 14 -- 35@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 187 |
0.03332 |
0.5559 |
b2019 |
hisG |
-10.76 |
0.077976 |
170 -- 191 |
15 -- 34 |
ATP phosphoribosyltransferase |
|
_____________169____________________192\n_____________|______________________|\n5'-UUU...AUAAC_G_____ACA____U_______AAUAA...AUC-3'\n______________G_UUCAG___GGUU_AAAGAGG\n______________:_||||:___||||_|||||||\n______________U_AAGUU___CCAA_UUUCUCC\n3'-CGC...GUCAC_G_____C______U_______ACGGC...AAG-5'\n_____________|______________________|\n_____________35_____________________14\n |
185 -- 191 |
15 -- 21 |
-17.0816 kcal/mol |
2.9882 kcal/mol |
3.33044 kcal/mol |
169 192@LB@ | |@LB@5'-UUU...AUAAC G ACA U AAUAA...AUC-3'@LB@ G UUCAG GGUU AAAGAGG@LB@ : ||||: |||| |||||||@LB@ U AAGUU CCAA UUUCUCC@LB@3'-CGC...GUCAC G C U ACGGC...AAG-5'@LB@ | |@LB@ 35 14@LB@@LB@@LB@Energy -10.76 kcal/mol@LB@Hybridization Energy -17.0816 kcal/mol@LB@Unfolding Energy - mRNA 2.9882 kcal/mol@LB@Unfolding Energy - sRNA 3.33044 kcal/mol@LB@@LB@Position - mRNA 170 -- 191@LB@Position - sRNA 15 -- 34@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 104 |
0.0176 |
0.5385 |
b2788 |
gudX |
-9.05 |
0.153387 |
171 -- 179 |
57 -- 65 |
glucarate dehydratase-related protein substrate unknown |
|
_____________170_______180\n_____________|_________|\n5'-CGG...GCGUA_________AACCU...CAU-3'\n______________UCGAGUUGA\n______________|||||||||\n______________AGCUCAACU\n3'-CGC...CAAUA_________CUUUG...AAG-5'\n_____________|_________|\n_____________66________56\n |
173 -- 179 |
57 -- 63 |
-12.8916 kcal/mol |
2.7095 kcal/mol |
1.13183 kcal/mol |
170 180@LB@ | |@LB@5'-CGG...GCGUA AACCU...CAU-3'@LB@ UCGAGUUGA@LB@ |||||||||@LB@ AGCUCAACU@LB@3'-CGC...CAAUA CUUUG...AAG-5'@LB@ | |@LB@ 66 56@LB@@LB@@LB@Energy -9.05 kcal/mol@LB@Hybridization Energy -12.8916 kcal/mol@LB@Unfolding Energy - mRNA 2.7095 kcal/mol@LB@Unfolding Energy - sRNA 1.13183 kcal/mol@LB@@LB@Position - mRNA 171 -- 179@LB@Position - sRNA 57 -- 65@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 57 -- 63@LB@ |
| 35 |
0.006586 |
0.5385 |
b2351 |
gtrB |
-12.36 |
0.040837 |
174 -- 213 |
48 -- 89 |
CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase |
|
_____________173________________________________________214\n_____________|__________________________________________|\n5'-GCA...UAUUC_____________U______GG__G___AA___A__UA____UUGUA...AAG-3'\n______________AAAGUUCAU__UG_CUUUAG__AU_CGA__UGA_GA__UCUC\n______________||||||||:__||_||||||__||_|||__|||_:|__||||\n______________UUUCAAGUG__AC_GAAAUC__UA_GCU__ACU_UU__AGAG\n3'-CGC...GGCGU_________CA__C______AA__A___CA___C__UG____CUUUG...AAG-5'\n_____________|__________________________________________|\n_____________90_________________________________________47\n |
176 -- 182 |
81 -- 87 |
-27.281 kcal/mol |
10.5075 kcal/mol |
4.41572 kcal/mol |
173 214@LB@ | |@LB@5'-GCA...UAUUC U GG G AA A UA UUGUA...AAG-3'@LB@ AAAGUUCAU UG CUUUAG AU CGA UGA GA UCUC@LB@ ||||||||: || |||||| || ||| ||| :| ||||@LB@ UUUCAAGUG AC GAAAUC UA GCU ACU UU AGAG@LB@3'-CGC...GGCGU CA C AA A CA C UG CUUUG...AAG-5'@LB@ | |@LB@ 90 47@LB@@LB@@LB@Energy -12.36 kcal/mol@LB@Hybridization Energy -27.281 kcal/mol@LB@Unfolding Energy - mRNA 10.5075 kcal/mol@LB@Unfolding Energy - sRNA 4.41572 kcal/mol@LB@@LB@Position - mRNA 174 -- 213@LB@Position - sRNA 48 -- 89@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 108 |
0.0187 |
0.5385 |
b1210 |
hemA |
-9.14 |
0.148366 |
174 -- 184 |
75 -- 84 |
glutamyl tRNA reductase |
|
_____________173_________185\n_____________|___________|\n5'-CCU...CCCUA__A________AUUAU...ACA-3'\n______________UC_ACGUUGGU\n______________||_|||||||:\n______________AG_UGCAACCG\n3'-CGC...UUUCA___________AAAUC...AAG-5'\n_____________|___________|\n_____________85__________74\n |
178 -- 184 |
75 -- 81 |
-12.935 kcal/mol |
3.29275 kcal/mol |
0.505918 kcal/mol |
173 185@LB@ | |@LB@5'-CCU...CCCUA A AUUAU...ACA-3'@LB@ UC ACGUUGGU@LB@ || |||||||:@LB@ AG UGCAACCG@LB@3'-CGC...UUUCA AAAUC...AAG-5'@LB@ | |@LB@ 85 74@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -12.935 kcal/mol@LB@Unfolding Energy - mRNA 3.29275 kcal/mol@LB@Unfolding Energy - sRNA 0.505918 kcal/mol@LB@@LB@Position - mRNA 174 -- 184@LB@Position - sRNA 75 -- 84@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 122 |
0.02068 |
0.5385 |
b4529 |
ydbJ |
-12.93 |
0.032363 |
174 -- 233 |
8 -- 79 |
DUF333 family putative lipoprotein |
|
_____________173_______________________________________________________________________234\n_____________|_________________________________________________________________________|\n5'-GCA...GUCGU_______GAA________UCA______GAAAA__U___A____C____________________U________UUAUU...GUU-3'\n______________UUGGCUU_________GA___GAGGAA_____GA_GCG_GCAG_G_UUUU__GGGU____AGGG_GUGCCGCU\n______________|||||||_________||___|||:||_____||_:||_||||_|_:||:__||||____||:|_||||||||\n______________AACCGAA_________CU___CUCUUU_____CU_UGC_CGUC_C_GAAG__CCCA____UCUC_CACGGCGA\n3'-CGC...AGUGC_______AUCAAUAAG__CAA______GAGAG__U___C____A_U____UU____AUUU_____________GGCAAAG-5'\n_____________|_________________________________________________________________________|\n_____________80________________________________________________________________________7\n |
227 -- 233 |
8 -- 14 |
-51.0346 kcal/mol |
16.597 kcal/mol |
21.5113 kcal/mol |
173 234@LB@ | |@LB@5'-GCA...GUCGU GAA UCA GAAAA U A C U UUAUU...GUU-3'@LB@ UUGGCUU GA GAGGAA GA GCG GCAG G UUUU GGGU AGGG GUGCCGCU@LB@ ||||||| || |||:|| || :|| |||| | :||: |||| ||:| ||||||||@LB@ AACCGAA CU CUCUUU CU UGC CGUC C GAAG CCCA UCUC CACGGCGA@LB@3'-CGC...AGUGC AUCAAUAAG CAA GAGAG U C A U UU AUUU GGCAAAG-5'@LB@ | |@LB@ 80 7@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -51.0346 kcal/mol@LB@Unfolding Energy - mRNA 16.597 kcal/mol@LB@Unfolding Energy - sRNA 21.5113 kcal/mol@LB@@LB@Position - mRNA 174 -- 233@LB@Position - sRNA 8 -- 79@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 123 |
0.02095 |
0.5385 |
b2562 |
yfhL |
-10.74 |
0.078719 |
174 -- 195 |
59 -- 77 |
putative 4Fe-4S cluster-containing protein |
|
_____________173____________________196\n_____________|______________________|\n5'-AGC...CGCCC_____GU_______UGA_____UCCUU...UUA-3'\n______________GGUUU__GUUGUUU___GAGUU\n______________||:||__|||:||:___|||||\n______________CCGAA__CAAUAAG___CUCAA\n3'-CGC...UGCAA_____AU_______________CUCUU...AAG-5'\n_____________|______________________|\n_____________78_____________________58\n |
181 -- 187 |
64 -- 70 |
-15.8972 kcal/mol |
4.34594 kcal/mol |
0.811926 kcal/mol |
173 196@LB@ | |@LB@5'-AGC...CGCCC GU UGA UCCUU...UUA-3'@LB@ GGUUU GUUGUUU GAGUU@LB@ ||:|| |||:||: |||||@LB@ CCGAA CAAUAAG CUCAA@LB@3'-CGC...UGCAA AU CUCUU...AAG-5'@LB@ | |@LB@ 78 58@LB@@LB@@LB@Energy -10.74 kcal/mol@LB@Hybridization Energy -15.8972 kcal/mol@LB@Unfolding Energy - mRNA 4.34594 kcal/mol@LB@Unfolding Energy - sRNA 0.811926 kcal/mol@LB@@LB@Position - mRNA 174 -- 195@LB@Position - sRNA 59 -- 77@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 140 |
0.02329 |
0.5385 |
b3026 |
qseC |
-7.47 |
0.277092 |
174 -- 202 |
52 -- 78 |
quorum sensing sensory histidine kinase in two-component regulatory system with QseB |
|
_____________173___________________________203\n_____________|_____________________________|\n5'-AAA...GUGCA____A_______CA_AUU__G________GAAAU...GGA-3'\n______________UGGU_UUGGUUA__C___AG_UGAGAAAU\n______________|||:_||:||||__|___||_|||||||:\n______________ACCG_AAUCAAU__G___UC_ACUCUUUG\n3'-CGC...GUGCA____A_______AA_C____A________AGAGC...AAG-5'\n_____________|_____________________________|\n_____________79____________________________51\n |
196 -- 202 |
52 -- 58 |
-18.6962 kcal/mol |
6.8409 kcal/mol |
4.38944 kcal/mol |
173 203@LB@ | |@LB@5'-AAA...GUGCA A CA AUU G GAAAU...GGA-3'@LB@ UGGU UUGGUUA C AG UGAGAAAU@LB@ |||: ||:|||| | || |||||||:@LB@ ACCG AAUCAAU G UC ACUCUUUG@LB@3'-CGC...GUGCA A AA C A AGAGC...AAG-5'@LB@ | |@LB@ 79 51@LB@@LB@@LB@Energy -7.47 kcal/mol@LB@Hybridization Energy -18.6962 kcal/mol@LB@Unfolding Energy - mRNA 6.8409 kcal/mol@LB@Unfolding Energy - sRNA 4.38944 kcal/mol@LB@@LB@Position - mRNA 174 -- 202@LB@Position - sRNA 52 -- 78@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 17 |
0.003067 |
0.5385 |
b1628 |
rsxB |
-11.62 |
0.055094 |
175 -- 198 |
58 -- 77 |
SoxR iron-sulfur cluster reduction factor component; putative iron-sulfur protein |
|
_____________174______________________199\n_____________|________________________|\n5'-CAC...UUAUG_________G_____GUGA_____UAAUG...ACG-3'\n______________GGCUUUAGU_GUUUG____AGUUG\n______________|||||||||_:||:|____|||||\n______________CCGAAAUCA_UAAGC____UCAAC\n3'-CGC...UGCAA_________A______________UCUUU...AAG-5'\n_____________|________________________|\n_____________78_______________________57\n |
177 -- 183 |
69 -- 75 |
-20.3316 kcal/mol |
7.50919 kcal/mol |
1.19974 kcal/mol |
174 199@LB@ | |@LB@5'-CAC...UUAUG G GUGA UAAUG...ACG-3'@LB@ GGCUUUAGU GUUUG AGUUG@LB@ ||||||||| :||:| |||||@LB@ CCGAAAUCA UAAGC UCAAC@LB@3'-CGC...UGCAA A UCUUU...AAG-5'@LB@ | |@LB@ 78 57@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -20.3316 kcal/mol@LB@Unfolding Energy - mRNA 7.50919 kcal/mol@LB@Unfolding Energy - sRNA 1.19974 kcal/mol@LB@@LB@Position - mRNA 175 -- 198@LB@Position - sRNA 58 -- 77@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 74 |
0.01362 |
0.5385 |
b0946 |
zapC |
-12.02 |
0.046851 |
175 -- 197 |
15 -- 35 |
FtsZ stabilizer |
|
_____________174_____________________198\n_____________|_______________________|\n5'-AUU...GCUGC_______U_____AG________CAGAU...GUU-3'\n______________GGUUUUA_AGGGU__GGGAGAGG\n______________|::||:|_|||||__:::|||||\n______________CUGAAGU_UCCCA__UUUUCUCC\n3'-CGC...CGUCA_____________A_________ACGGC...AAG-5'\n_____________|_______________________|\n_____________36______________________14\n |
191 -- 197 |
15 -- 21 |
-19.3355 kcal/mol |
3.98393 kcal/mol |
3.33058 kcal/mol |
174 198@LB@ | |@LB@5'-AUU...GCUGC U AG CAGAU...GUU-3'@LB@ GGUUUUA AGGGU GGGAGAGG@LB@ |::||:| ||||| :::|||||@LB@ CUGAAGU UCCCA UUUUCUCC@LB@3'-CGC...CGUCA A ACGGC...AAG-5'@LB@ | |@LB@ 36 14@LB@@LB@@LB@Energy -12.02 kcal/mol@LB@Hybridization Energy -19.3355 kcal/mol@LB@Unfolding Energy - mRNA 3.98393 kcal/mol@LB@Unfolding Energy - sRNA 3.33058 kcal/mol@LB@@LB@Position - mRNA 175 -- 197@LB@Position - sRNA 15 -- 35@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 15 -- 21@LB@ |
