| 62 |
0.01254 |
0.5385 |
b0027 |
lspA |
-10.68 |
0.080768 |
51 -- 66 |
75 -- 90 |
prolipoprotein signal peptidase (signal peptidase II) |
|
_____________50________________67\n_____________|_________________|\n5'-UAU...GGGCU______________A__AAAGC...ACU-3'\n______________GAAAG_UCGCGUUG_GU\n______________:||||_||:|||||_|:\n______________UUUUC_AGUGCAAC_CG\n3'-CGC...AGGCG_____A___________AAAUC...AAG-5'\n_____________|_________________|\n_____________91________________74\n |
57 -- 63 |
77 -- 83 |
-15.4073 kcal/mol |
4.21469 kcal/mol |
0.517251 kcal/mol |
50 67@LB@ | |@LB@5'-UAU...GGGCU A AAAGC...ACU-3'@LB@ GAAAG UCGCGUUG GU@LB@ :|||| ||:||||| |:@LB@ UUUUC AGUGCAAC CG@LB@3'-CGC...AGGCG A AAAUC...AAG-5'@LB@ | |@LB@ 91 74@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -15.4073 kcal/mol@LB@Unfolding Energy - mRNA 4.21469 kcal/mol@LB@Unfolding Energy - sRNA 0.517251 kcal/mol@LB@@LB@Position - mRNA 51 -- 66@LB@Position - sRNA 75 -- 90@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 177 |
0.03112 |
0.5559 |
b0080 |
cra |
-12.94 |
0.032158 |
57 -- 78 |
62 -- 84 |
transcriptional repressor-activator for carbon metabolism |
|
_____________56_______________________79\n_____________|________________________|\n5'-GGC...ACAUG_________G____UU________AAUCA...AAA-3'\n______________UCACGUUGG_CUUU__UUG__CGA\n______________|||||||||_||||__||:__|||\n______________AGUGCAACC_GAAA__AAU__GCU\n3'-CGC...UUUCA______________UC___AA___CAACU...AAG-5'\n_____________|________________________|\n_____________85_______________________61\n |
59 -- 65 |
76 -- 82 |
-19.2849 kcal/mol |
4.65103 kcal/mol |
1.6921 kcal/mol |
56 79@LB@ | |@LB@5'-GGC...ACAUG G UU AAUCA...AAA-3'@LB@ UCACGUUGG CUUU UUG CGA@LB@ ||||||||| |||| ||: |||@LB@ AGUGCAACC GAAA AAU GCU@LB@3'-CGC...UUUCA UC AA CAACU...AAG-5'@LB@ | |@LB@ 85 61@LB@@LB@@LB@Energy -12.94 kcal/mol@LB@Hybridization Energy -19.2849 kcal/mol@LB@Unfolding Energy - mRNA 4.65103 kcal/mol@LB@Unfolding Energy - sRNA 1.6921 kcal/mol@LB@@LB@Position - mRNA 57 -- 78@LB@Position - sRNA 62 -- 84@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 180 |
0.03162 |
0.5559 |
b1941 |
fliI |
-9.97 |
0.106944 |
57 -- 70 |
74 -- 88 |
flagellum-specific ATP synthase |
|
_____________56______________71\n_____________|_______________|\n5'-CUG...ACCUU________A______GGCGC...GCG-3'\n______________AAGUUUGC__UGGCU\n______________|||||::|__|||||\n______________UUCAAGUG__ACCGA\n3'-CGC...GCGUU________CA_____AAUCA...AAG-5'\n_____________|_______________|\n_____________89______________73\n |
58 -- 64 |
81 -- 87 |
-13.0478 kcal/mol |
2.55971 kcal/mol |
0.516514 kcal/mol |
56 71@LB@ | |@LB@5'-CUG...ACCUU A GGCGC...GCG-3'@LB@ AAGUUUGC UGGCU@LB@ |||||::| |||||@LB@ UUCAAGUG ACCGA@LB@3'-CGC...GCGUU CA AAUCA...AAG-5'@LB@ | |@LB@ 89 73@LB@@LB@@LB@Energy -9.97 kcal/mol@LB@Hybridization Energy -13.0478 kcal/mol@LB@Unfolding Energy - mRNA 2.55971 kcal/mol@LB@Unfolding Energy - sRNA 0.516514 kcal/mol@LB@@LB@Position - mRNA 57 -- 70@LB@Position - sRNA 74 -- 88@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 19 |
0.003195 |
0.5385 |
b3739 |
atpI |
-12.12 |
0.045044 |
59 -- 85 |
62 -- 85 |
ATP synthase membrane-bound accessory factor |
|
_____________58___________________________86\n_____________|____________________________|\n5'-GAA...AUUUA_____CUU______AC____________AAUCA...ACC-3'\n______________UUCAC___UUGGCU__UUA_UUGUUUGA\n______________|||||___||||||__|||_||:||:||\n______________AAGUG___AACCGA__AAU_AAUAAGCU\n3'-CGC...UUUUC_____C_____________C________CAACU...AAG-5'\n_____________|____________________________|\n_____________86___________________________61\n |
79 -- 85 |
62 -- 68 |
-17.7596 kcal/mol |
3.93623 kcal/mol |
1.70582 kcal/mol |
58 86@LB@ | |@LB@5'-GAA...AUUUA CUU AC AAUCA...ACC-3'@LB@ UUCAC UUGGCU UUA UUGUUUGA@LB@ ||||| |||||| ||| ||:||:||@LB@ AAGUG AACCGA AAU AAUAAGCU@LB@3'-CGC...UUUUC C C CAACU...AAG-5'@LB@ | |@LB@ 86 61@LB@@LB@@LB@Energy -12.12 kcal/mol@LB@Hybridization Energy -17.7596 kcal/mol@LB@Unfolding Energy - mRNA 3.93623 kcal/mol@LB@Unfolding Energy - sRNA 1.70582 kcal/mol@LB@@LB@Position - mRNA 59 -- 85@LB@Position - sRNA 62 -- 85@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 191 |
0.03353 |
0.5559 |
b2129 |
yehX |
-7.36 |
0.287226 |
59 -- 67 |
69 -- 77 |
putative ABC transporter ATPase |
|
_____________58________68\n_____________|_________|\n5'-GGU...CAGGC_________GCGCU...UUG-3'\n______________GGUUUUGGU\n______________||:|||:||\n______________CCGAAAUCA\n3'-CGC...UGCAA_________AUAAG...AAG-5'\n_____________|_________|\n_____________78________68\n |
61 -- 67 |
69 -- 75 |
-10.3561 kcal/mol |
2.74802 kcal/mol |
0.243235 kcal/mol |
58 68@LB@ | |@LB@5'-GGU...CAGGC GCGCU...UUG-3'@LB@ GGUUUUGGU@LB@ ||:|||:||@LB@ CCGAAAUCA@LB@3'-CGC...UGCAA AUAAG...AAG-5'@LB@ | |@LB@ 78 68@LB@@LB@@LB@Energy -7.36 kcal/mol@LB@Hybridization Energy -10.3561 kcal/mol@LB@Unfolding Energy - mRNA 2.74802 kcal/mol@LB@Unfolding Energy - sRNA 0.243235 kcal/mol@LB@@LB@Position - mRNA 59 -- 67@LB@Position - sRNA 69 -- 77@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 126 |
0.02177 |
0.5385 |
b4162 |
orn |
-9.93 |
0.108535 |
62 -- 89 |
61 -- 86 |
oligoribonuclease |
|
_____________61___________________________90\n_____________|____________________________|\n5'-ACA...UUGGC_______CG_C___GC___CCU__G___AGUUU...CCG-3'\n______________GUUCACG__G_GCU__UGG___UU_GAG\n______________|||||||__|_|||__|:|___||_|||\n______________CAAGUGC__C_CGA__AUC___AA_CUC\n3'-CGC...GUUUU_______AA_____A____AAU__G___AACUC...AAG-5'\n_____________|____________________________|\n_____________87___________________________60\n |
62 -- 68 |
80 -- 86 |
-20.598 kcal/mol |
8.95458 kcal/mol |
1.70915 kcal/mol |
61 90@LB@ | |@LB@5'-ACA...UUGGC CG C GC CCU G AGUUU...CCG-3'@LB@ GUUCACG G GCU UGG UU GAG@LB@ ||||||| | ||| |:| || |||@LB@ CAAGUGC C CGA AUC AA CUC@LB@3'-CGC...GUUUU AA A AAU G AACUC...AAG-5'@LB@ | |@LB@ 87 60@LB@@LB@@LB@Energy -9.93 kcal/mol@LB@Hybridization Energy -20.598 kcal/mol@LB@Unfolding Energy - mRNA 8.95458 kcal/mol@LB@Unfolding Energy - sRNA 1.70915 kcal/mol@LB@@LB@Position - mRNA 62 -- 89@LB@Position - sRNA 61 -- 86@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 127 |
0.02181 |
0.5385 |
b3057 |
bacA |
-7.57 |
0.267037 |
62 -- 69 |
75 -- 82 |
undecaprenyl pyrophosphate phosphatase |
|
_____________61_______70\n_____________|________|\n5'-UUC...GGCGA________GUAAU...UUG-3'\n______________AUGUUGGC\n______________|:||||||\n______________UGCAACCG\n3'-CGC...UCAAG________AAAUC...AAG-5'\n_____________|________|\n_____________83_______74\n |
63 -- 69 |
75 -- 81 |
-12.0605 kcal/mol |
4.15225 kcal/mol |
0.339284 kcal/mol |
61 70@LB@ | |@LB@5'-UUC...GGCGA GUAAU...UUG-3'@LB@ AUGUUGGC@LB@ |:||||||@LB@ UGCAACCG@LB@3'-CGC...UCAAG AAAUC...AAG-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -7.57 kcal/mol@LB@Hybridization Energy -12.0605 kcal/mol@LB@Unfolding Energy - mRNA 4.15225 kcal/mol@LB@Unfolding Energy - sRNA 0.339284 kcal/mol@LB@@LB@Position - mRNA 62 -- 69@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 131 |
0.02244 |
0.5385 |
b1713 |
pheT |
-10.81 |
0.076409 |
64 -- 80 |
73 -- 89 |
phenylalanine tRNA synthetase beta subunit |
|
_____________63________________81\n_____________|_________________|\n5'-CUG...ACCCG_________UC______CGCCU...ACG-3'\n______________GAAGUUUAC__UGGUUU\n______________:|||||:||__|||:||\n______________UUUCAAGUG__ACCGAA\n3'-CGC...GGCGU_________CA______AUCAA...AAG-5'\n_____________|_________________|\n_____________90________________72\n |
66 -- 72 |
81 -- 87 |
-14.6363 kcal/mol |
3.30516 kcal/mol |
0.517627 kcal/mol |
63 81@LB@ | |@LB@5'-CUG...ACCCG UC CGCCU...ACG-3'@LB@ GAAGUUUAC UGGUUU@LB@ :|||||:|| |||:||@LB@ UUUCAAGUG ACCGAA@LB@3'-CGC...GGCGU CA AUCAA...AAG-5'@LB@ | |@LB@ 90 72@LB@@LB@@LB@Energy -10.81 kcal/mol@LB@Hybridization Energy -14.6363 kcal/mol@LB@Unfolding Energy - mRNA 3.30516 kcal/mol@LB@Unfolding Energy - sRNA 0.517627 kcal/mol@LB@@LB@Position - mRNA 64 -- 80@LB@Position - sRNA 73 -- 89@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 53 |
0.01075 |
0.5385 |
b2215 |
ompC |
-12.88 |
0.032936 |
67 -- 90 |
57 -- 76 |
outer membrane porin protein C |
|
_____________66_______________________91\n_____________|________________________|\n5'-AUC...UAAAA________AUCA______U_____AUUAU...AUC-3'\n______________GUUUUAGU____UAUUCG_GUUGG\n______________|:||||||____||||||_||||:\n______________CGAAAUCA____AUAAGC_CAACU\n3'-CGC...GCAAC__________________U_____CUUUG...AAG-5'\n_____________|________________________|\n_____________77_______________________56\n |
68 -- 74 |
69 -- 75 |
-17.5321 kcal/mol |
3.43109 kcal/mol |
1.21756 kcal/mol |
66 91@LB@ | |@LB@5'-AUC...UAAAA AUCA U AUUAU...AUC-3'@LB@ GUUUUAGU UAUUCG GUUGG@LB@ |:|||||| |||||| ||||:@LB@ CGAAAUCA AUAAGC CAACU@LB@3'-CGC...GCAAC U CUUUG...AAG-5'@LB@ | |@LB@ 77 56@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -17.5321 kcal/mol@LB@Unfolding Energy - mRNA 3.43109 kcal/mol@LB@Unfolding Energy - sRNA 1.21756 kcal/mol@LB@@LB@Position - mRNA 67 -- 90@LB@Position - sRNA 57 -- 76@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 160 |
0.02795 |
0.5559 |
b1475 |
fdnH |
-7.98 |
0.230122 |
69 -- 80 |
24 -- 35 |
formate dehydrogenase-N Fe-S (beta) subunit nitrate-inducible |
|
_____________68___________81\n_____________|____________|\n5'-CGC...ACUGG____________GUCGC...UUA-3'\n______________GGCUUUGAGGGU\n______________|:|||::|||||\n______________CUGAAGUUCCCA\n3'-CGC...CGUCA____________AUUUU...AAG-5'\n_____________|____________|\n_____________36___________23\n |
74 -- 80 |
24 -- 30 |
-17.8377 kcal/mol |
6.53052 kcal/mol |
3.32971 kcal/mol |
68 81@LB@ | |@LB@5'-CGC...ACUGG GUCGC...UUA-3'@LB@ GGCUUUGAGGGU@LB@ |:|||::|||||@LB@ CUGAAGUUCCCA@LB@3'-CGC...CGUCA AUUUU...AAG-5'@LB@ | |@LB@ 36 23@LB@@LB@@LB@Energy -7.98 kcal/mol@LB@Hybridization Energy -17.8377 kcal/mol@LB@Unfolding Energy - mRNA 6.53052 kcal/mol@LB@Unfolding Energy - sRNA 3.32971 kcal/mol@LB@@LB@Position - mRNA 69 -- 80@LB@Position - sRNA 24 -- 35@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 24 -- 30@LB@ |
