| 110 |
0.0189 |
0.5385 |
b3175 |
secG |
-9.72 |
0.118042 |
86 -- 106 |
67 -- 90 |
preprotein translocase membrane subunit |
|
_____________85_______________________107\n_____________|________________________|\n5'-GCG...CUUGC__________UC____________GUAUU...CCU-3'\n______________GAAGG_UCAU____GCUUUGGUUA\n______________:||:|_|||:____|||||:||||\n______________UUUUC_AGUG____CGAAAUCAAU\n3'-CGC...AGGCG_____A____CAAC__________AAGCU...AAG-5'\n_____________|________________________|\n_____________91_______________________66\n |
100 -- 106 |
67 -- 73 |
-15.607 kcal/mol |
5.31183 kcal/mol |
0.573552 kcal/mol |
85 107@LB@ | |@LB@5'-GCG...CUUGC UC GUAUU...CCU-3'@LB@ GAAGG UCAU GCUUUGGUUA@LB@ :||:| |||: |||||:||||@LB@ UUUUC AGUG CGAAAUCAAU@LB@3'-CGC...AGGCG A CAAC AAGCU...AAG-5'@LB@ | |@LB@ 91 66@LB@@LB@@LB@Energy -9.72 kcal/mol@LB@Hybridization Energy -15.607 kcal/mol@LB@Unfolding Energy - mRNA 5.31183 kcal/mol@LB@Unfolding Energy - sRNA 0.573552 kcal/mol@LB@@LB@Position - mRNA 86 -- 106@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 199 |
0.03481 |
0.5559 |
b0407 |
yajC |
-8.41 |
0.195839 |
88 -- 104 |
15 -- 30 |
SecYEG protein translocase auxillary subunit |
|
_____________87________________105\n_____________|_________________|\n5'-UCU...UUACG_____CUAUU_______GUAAA...UUU-3'\n______________CAAGG_____GAAGAGG\n______________|||||_____:||||||\n______________GUUCC_____UUUCUCC\n3'-CGC...CUGAA_____CAAU________ACGGC...AAG-5'\n_____________|_________________|\n_____________31________________14\n |
98 -- 104 |
15 -- 21 |
-15.1331 kcal/mol |
3.4367 kcal/mol |
3.28624 kcal/mol |
87 105@LB@ | |@LB@5'-UCU...UUACG CUAUU GUAAA...UUU-3'@LB@ CAAGG GAAGAGG@LB@ ||||| :||||||@LB@ GUUCC UUUCUCC@LB@3'-CGC...CUGAA CAAU ACGGC...AAG-5'@LB@ | |@LB@ 31 14@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -15.1331 kcal/mol@LB@Unfolding Energy - mRNA 3.4367 kcal/mol@LB@Unfolding Energy - sRNA 3.28624 kcal/mol@LB@@LB@Position - mRNA 88 -- 104@LB@Position - sRNA 15 -- 30@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 63 |
0.01271 |
0.5385 |
b3306 |
rpsH |
-10.49 |
0.086924 |
89 -- 100 |
56 -- 67 |
30S ribosomal subunit protein S8 |
|
_____________88___________101\n_____________|____________|\n5'-AGC...CGGAA____________CCGUA...AAG-3'\n______________GUUCGGGUUGAG\n______________:||||:||||||\n______________UAAGCUCAACUC\n3'-CGC...AUCAA____________UUUGA...AAG-5'\n_____________|____________|\n_____________68___________55\n |
94 -- 100 |
56 -- 62 |
-16.8063 kcal/mol |
4.74141 kcal/mol |
1.57281 kcal/mol |
88 101@LB@ | |@LB@5'-AGC...CGGAA CCGUA...AAG-3'@LB@ GUUCGGGUUGAG@LB@ :||||:||||||@LB@ UAAGCUCAACUC@LB@3'-CGC...AUCAA UUUGA...AAG-5'@LB@ | |@LB@ 68 55@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -16.8063 kcal/mol@LB@Unfolding Energy - mRNA 4.74141 kcal/mol@LB@Unfolding Energy - sRNA 1.57281 kcal/mol@LB@@LB@Position - mRNA 89 -- 100@LB@Position - sRNA 56 -- 67@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 97 |
0.01643 |
0.5385 |
b2704 |
srlB |
-9.20 |
0.144516 |
91 -- 103 |
75 -- 87 |
glucitol/sorbitol-specific enzyme IIA component of PTS |
|
_____________90____________104\n_____________|_____________|\n5'-GGC...GACAC_________C___GUCCC...CUG-3'\n______________GGUUCGCGU_GGU\n______________:||||:|||_||:\n______________UCAAGUGCA_CCG\n3'-CGC...CGUUU_________A___AAAUC...AAG-5'\n_____________|_____________|\n_____________88____________74\n |
93 -- 99 |
79 -- 85 |
-16.5171 kcal/mol |
6.8003 kcal/mol |
0.512669 kcal/mol |
90 104@LB@ | |@LB@5'-GGC...GACAC C GUCCC...CUG-3'@LB@ GGUUCGCGU GGU@LB@ :||||:||| ||:@LB@ UCAAGUGCA CCG@LB@3'-CGC...CGUUU A AAAUC...AAG-5'@LB@ | |@LB@ 88 74@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -16.5171 kcal/mol@LB@Unfolding Energy - mRNA 6.8003 kcal/mol@LB@Unfolding Energy - sRNA 0.512669 kcal/mol@LB@@LB@Position - mRNA 91 -- 103@LB@Position - sRNA 75 -- 87@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 175 |
0.03099 |
0.5559 |
b2149 |
mglA |
-9.34 |
0.136967 |
92 -- 105 |
70 -- 84 |
methyl-galactoside ABC transporter ATPase |
|
_____________91______________106\n_____________|_______________|\n5'-CGA...GUACC__________G____AUAAA...AUU-3'\n______________UUAUGUUGGC__UAG\n______________|:|:||||||__|||\n______________AGUGCAACCG__AUC\n3'-CGC...UUUCA__________AA___AAUAA...AAG-5'\n_____________|_______________|\n_____________85______________69\n |
95 -- 101 |
75 -- 81 |
-15.5186 kcal/mol |
5.61316 kcal/mol |
0.563314 kcal/mol |
91 106@LB@ | |@LB@5'-CGA...GUACC G AUAAA...AUU-3'@LB@ UUAUGUUGGC UAG@LB@ |:|:|||||| |||@LB@ AGUGCAACCG AUC@LB@3'-CGC...UUUCA AA AAUAA...AAG-5'@LB@ | |@LB@ 85 69@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -15.5186 kcal/mol@LB@Unfolding Energy - mRNA 5.61316 kcal/mol@LB@Unfolding Energy - sRNA 0.563314 kcal/mol@LB@@LB@Position - mRNA 92 -- 105@LB@Position - sRNA 70 -- 84@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 79 |
0.01412 |
0.5385 |
b2830 |
rppH |
-5.99 |
0.454649 |
93 -- 100 |
64 -- 71 |
RNA pyrophosphohydrolase |
|
_____________92_______101\n_____________|________|\n5'-UUC...CUGUG________AAUUG...GGC-3'\n______________AGUUAUUC\n______________||||||||\n______________UCAAUAAG\n3'-CGC...CGAAA________CUCAA...AAG-5'\n_____________|________|\n_____________72_______63\n |
94 -- 100 |
64 -- 70 |
-7.84269 kcal/mol |
1.74359 kcal/mol |
0.11296 kcal/mol |
92 101@LB@ | |@LB@5'-UUC...CUGUG AAUUG...GGC-3'@LB@ AGUUAUUC@LB@ ||||||||@LB@ UCAAUAAG@LB@3'-CGC...CGAAA CUCAA...AAG-5'@LB@ | |@LB@ 72 63@LB@@LB@@LB@Energy -5.99 kcal/mol@LB@Hybridization Energy -7.84269 kcal/mol@LB@Unfolding Energy - mRNA 1.74359 kcal/mol@LB@Unfolding Energy - sRNA 0.11296 kcal/mol@LB@@LB@Position - mRNA 93 -- 100@LB@Position - sRNA 64 -- 71@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 32 |
0.005403 |
0.5385 |
b0951 |
pqiB |
-10.24 |
0.095947 |
95 -- 108 |
69 -- 82 |
paraquat-inducible SoxRS-regulated MCE domain protein |
|
_____________94_____________109\n_____________|______________|\n5'-CUG...CAUUA_____U________CGUCA...UUC-3'\n______________AUGUU_GCUUUAGU\n______________|:|||_||||||||\n______________UGCAA_CGAAAUCA\n3'-CGC...UCAAG_____C________AUAAG...AAG-5'\n_____________|______________|\n_____________83_____________68\n |
102 -- 108 |
69 -- 75 |
-13.4891 kcal/mol |
2.8545 kcal/mol |
0.389912 kcal/mol |
94 109@LB@ | |@LB@5'-CUG...CAUUA U CGUCA...UUC-3'@LB@ AUGUU GCUUUAGU@LB@ |:||| ||||||||@LB@ UGCAA CGAAAUCA@LB@3'-CGC...UCAAG C AUAAG...AAG-5'@LB@ | |@LB@ 83 68@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -13.4891 kcal/mol@LB@Unfolding Energy - mRNA 2.8545 kcal/mol@LB@Unfolding Energy - sRNA 0.389912 kcal/mol@LB@@LB@Position - mRNA 95 -- 108@LB@Position - sRNA 69 -- 82@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 69 |
0.01301 |
0.5385 |
b0174 |
ispU |
-11.35 |
0.061456 |
97 -- 106 |
71 -- 80 |
undecaprenyl pyrophosphate synthase |
|
_____________96_________107\n_____________|__________|\n5'-CGU...AAGUA__________UAAGG...AAA-3'\n______________GUUGGCUUUA\n______________||||||||||\n______________CAACCGAAAU\n3'-CGC...AAGUG__________CAAUA...AAG-5'\n_____________|__________|\n_____________81_________70\n |
100 -- 106 |
71 -- 77 |
-14.3232 kcal/mol |
2.73321 kcal/mol |
0.236872 kcal/mol |
96 107@LB@ | |@LB@5'-CGU...AAGUA UAAGG...AAA-3'@LB@ GUUGGCUUUA@LB@ ||||||||||@LB@ CAACCGAAAU@LB@3'-CGC...AAGUG CAAUA...AAG-5'@LB@ | |@LB@ 81 70@LB@@LB@@LB@Energy -11.35 kcal/mol@LB@Hybridization Energy -14.3232 kcal/mol@LB@Unfolding Energy - mRNA 2.73321 kcal/mol@LB@Unfolding Energy - sRNA 0.236872 kcal/mol@LB@@LB@Position - mRNA 97 -- 106@LB@Position - sRNA 71 -- 80@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 90 |
0.01553 |
0.5385 |
b1043 |
csgC |
-15.92 |
0.009464 |
100 -- 115 |
69 -- 84 |
curli assembly protein |
|
_____________99_______________116\n_____________|________________|\n5'-GUG...GUGAC___G____________AACAA...UUA-3'\n______________UCA_GUUGGCUUUGGU\n______________|||_|||||||||:||\n______________AGU_CAACCGAAAUCA\n3'-CGC...UUUCA___G____________AUAAG...AAG-5'\n_____________|________________|\n_____________85_______________68\n |
109 -- 115 |
69 -- 75 |
-23.6243 kcal/mol |
7.14442 kcal/mol |
0.563592 kcal/mol |
99 116@LB@ | |@LB@5'-GUG...GUGAC G AACAA...UUA-3'@LB@ UCA GUUGGCUUUGGU@LB@ ||| |||||||||:||@LB@ AGU CAACCGAAAUCA@LB@3'-CGC...UUUCA G AUAAG...AAG-5'@LB@ | |@LB@ 85 68@LB@@LB@@LB@Energy -15.92 kcal/mol@LB@Hybridization Energy -23.6243 kcal/mol@LB@Unfolding Energy - mRNA 7.14442 kcal/mol@LB@Unfolding Energy - sRNA 0.563592 kcal/mol@LB@@LB@Position - mRNA 100 -- 115@LB@Position - sRNA 69 -- 84@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 196 |
0.0344 |
0.5559 |
b0954 |
fabA |
-7.50 |
0.274211 |
100 -- 110 |
74 -- 84 |
beta-hydroxydecanoyl thioester dehydrase |
|
_____________99__________111\n_____________|___________|\n5'-GUG...GGCCA___________GAACU...ACA-3'\n______________UUACGUUGGCU\n______________|:|||||||||\n______________AGUGCAACCGA\n3'-CGC...UUUCA___________AAUCA...AAG-5'\n_____________|___________|\n_____________85__________73\n |
104 -- 110 |
74 -- 80 |
-16.8122 kcal/mol |
8.80896 kcal/mol |
0.508159 kcal/mol |
99 111@LB@ | |@LB@5'-GUG...GGCCA GAACU...ACA-3'@LB@ UUACGUUGGCU@LB@ |:|||||||||@LB@ AGUGCAACCGA@LB@3'-CGC...UUUCA AAUCA...AAG-5'@LB@ | |@LB@ 85 73@LB@@LB@@LB@Energy -7.50 kcal/mol@LB@Hybridization Energy -16.8122 kcal/mol@LB@Unfolding Energy - mRNA 8.80896 kcal/mol@LB@Unfolding Energy - sRNA 0.508159 kcal/mol@LB@@LB@Position - mRNA 100 -- 110@LB@Position - sRNA 74 -- 84@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 74 -- 80@LB@ |
