| 42 |
0.008798 |
0.5385 |
b0087 |
mraY |
-9.88 |
0.111048 |
142 -- 153 |
79 -- 90 |
phospho-N-acetylmuramoyl-pentapeptide transferase |
|
_____________141__________154\n_____________|____________|\n5'-GAC...UAGUU____________AGUGC...CGC-3'\n______________AAGGGUUCACGU\n______________||::||||||||\n______________UUUUCAAGUGCA\n3'-CGC...AGGCG____________ACCGA...AAG-5'\n_____________|____________|\n_____________91___________78\n |
147 -- 153 |
79 -- 85 |
-14.1224 kcal/mol |
3.73912 kcal/mol |
0.506924 kcal/mol |
141 154@LB@ | |@LB@5'-GAC...UAGUU AGUGC...CGC-3'@LB@ AAGGGUUCACGU@LB@ ||::||||||||@LB@ UUUUCAAGUGCA@LB@3'-CGC...AGGCG ACCGA...AAG-5'@LB@ | |@LB@ 91 78@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -14.1224 kcal/mol@LB@Unfolding Energy - mRNA 3.73912 kcal/mol@LB@Unfolding Energy - sRNA 0.506924 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 79 -- 90@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 171 |
0.03054 |
0.5559 |
b0045 |
yaaU |
-10.82 |
0.076059 |
142 -- 153 |
73 -- 84 |
putative MFS sugar transporter; membrane protein |
|
_____________141__________154\n_____________|____________|\n5'-AAG...ACGGC_G__________GAUAC...UAC-3'\n______________U_AUGUUGGUUU\n______________|_|:|||||:||\n______________A_UGCAACCGAA\n3'-CGC...UUUCA_G__________AUCAA...AAG-5'\n_____________|____________|\n_____________85___________72\n |
147 -- 153 |
73 -- 79 |
-12.9415 kcal/mol |
1.60777 kcal/mol |
0.508835 kcal/mol |
141 154@LB@ | |@LB@5'-AAG...ACGGC G GAUAC...UAC-3'@LB@ U AUGUUGGUUU@LB@ | |:|||||:||@LB@ A UGCAACCGAA@LB@3'-CGC...UUUCA G AUCAA...AAG-5'@LB@ | |@LB@ 85 72@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -12.9415 kcal/mol@LB@Unfolding Energy - mRNA 1.60777 kcal/mol@LB@Unfolding Energy - sRNA 0.508835 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 73 -- 84@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 162 |
0.02861 |
0.5559 |
b0564 |
appY |
-9.53 |
0.127084 |
148 -- 162 |
62 -- 79 |
global transcriptional activator; DLP12 prophage |
b1499 b3515 b4116 b0566 b3516 |
_____________147________________163\n_____________|__________________|\n5'-AAA...UUUAA__________________CUACU...UAA-3'\n______________UUGGUU___GUUAUUUGA\n______________||||:|___||||||:||\n______________AACCGA___CAAUAAGCU\n3'-CGC...AGUGC______AAU_________CAACU...AAG-5'\n_____________|__________________|\n_____________80_________________61\n |
156 -- 162 |
62 -- 68 |
-13.1987 kcal/mol |
2.92728 kcal/mol |
0.737706 kcal/mol |
147 163@LB@ | |@LB@5'-AAA...UUUAA CUACU...UAA-3'@LB@ UUGGUU GUUAUUUGA@LB@ ||||:| ||||||:||@LB@ AACCGA CAAUAAGCU@LB@3'-CGC...AGUGC AAU CAACU...AAG-5'@LB@ | |@LB@ 80 61@LB@@LB@@LB@Energy -9.53 kcal/mol@LB@Hybridization Energy -13.1987 kcal/mol@LB@Unfolding Energy - mRNA 2.92728 kcal/mol@LB@Unfolding Energy - sRNA 0.737706 kcal/mol@LB@@LB@Position - mRNA 148 -- 162@LB@Position - sRNA 62 -- 79@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 66 |
0.01284 |
0.5385 |
b1645 |
ydhK |
-10.57 |
0.084210 |
155 -- 164 |
75 -- 84 |
putative efflux protein (PET) component of YdhJK efflux pump |
|
_____________154________165\n_____________|__________|\n5'-CAG...CGAUG__________GUCGG...UGG-3'\n______________UCACGUUGGU\n______________|||||||||:\n______________AGUGCAACCG\n3'-CGC...UUUCA__________AAAUC...AAG-5'\n_____________|__________|\n_____________85_________74\n |
158 -- 164 |
75 -- 81 |
-15.7281 kcal/mol |
4.6508 kcal/mol |
0.505918 kcal/mol |
154 165@LB@ | |@LB@5'-CAG...CGAUG GUCGG...UGG-3'@LB@ UCACGUUGGU@LB@ |||||||||:@LB@ AGUGCAACCG@LB@3'-CGC...UUUCA AAAUC...AAG-5'@LB@ | |@LB@ 85 74@LB@@LB@@LB@Energy -10.57 kcal/mol@LB@Hybridization Energy -15.7281 kcal/mol@LB@Unfolding Energy - mRNA 4.6508 kcal/mol@LB@Unfolding Energy - sRNA 0.505918 kcal/mol@LB@@LB@Position - mRNA 155 -- 164@LB@Position - sRNA 75 -- 84@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 47 |
0.009854 |
0.5385 |
b3408 |
feoA |
-10.27 |
0.095129 |
159 -- 188 |
52 -- 83 |
ferrous iron transporter protein A |
|
_____________158_________________________________189\n_____________|___________________________________|\n5'-AGC...CGCCC____A_______________C___UAA________AAGUA...CUG-3'\n______________CAUG__GGU___AGUUA_UC_AGU___UGAGAAAC\n______________||:|__||:___|||||_||_|||___||||||||\n______________GUGC__CCG___UCAAU_AG_UCA___ACUCUUUG\n3'-CGC...UUCAA____AA___AAA_____A__C______________AGAGC...AAG-5'\n_____________|___________________________________|\n_____________84__________________________________51\n |
182 -- 188 |
52 -- 58 |
-20.9255 kcal/mol |
6.25891 kcal/mol |
4.4004 kcal/mol |
158 189@LB@ | |@LB@5'-AGC...CGCCC A C UAA AAGUA...CUG-3'@LB@ CAUG GGU AGUUA UC AGU UGAGAAAC@LB@ ||:| ||: ||||| || ||| ||||||||@LB@ GUGC CCG UCAAU AG UCA ACUCUUUG@LB@3'-CGC...UUCAA AA AAA A C AGAGC...AAG-5'@LB@ | |@LB@ 84 51@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -20.9255 kcal/mol@LB@Unfolding Energy - mRNA 6.25891 kcal/mol@LB@Unfolding Energy - sRNA 4.4004 kcal/mol@LB@@LB@Position - mRNA 159 -- 188@LB@Position - sRNA 52 -- 83@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 101 |
0.01678 |
0.5385 |
b0452 |
tesB |
-11.66 |
0.054224 |
159 -- 170 |
73 -- 84 |
acyl-CoA thioesterase 2 |
|
_____________158__________171\n_____________|____________|\n5'-CAA...UCAAC____U_______GCUGC...AGG-3'\n______________UCAC_UUGGCUU\n______________||||_|||||||\n______________AGUG_AACCGAA\n3'-CGC...UUUCA____C_______AUCAA...AAG-5'\n_____________|____________|\n_____________85___________72\n |
164 -- 170 |
73 -- 79 |
-14.9501 kcal/mol |
2.7795 kcal/mol |
0.508835 kcal/mol |
158 171@LB@ | |@LB@5'-CAA...UCAAC U GCUGC...AGG-3'@LB@ UCAC UUGGCUU@LB@ |||| |||||||@LB@ AGUG AACCGAA@LB@3'-CGC...UUUCA C AUCAA...AAG-5'@LB@ | |@LB@ 85 72@LB@@LB@@LB@Energy -11.66 kcal/mol@LB@Hybridization Energy -14.9501 kcal/mol@LB@Unfolding Energy - mRNA 2.7795 kcal/mol@LB@Unfolding Energy - sRNA 0.508835 kcal/mol@LB@@LB@Position - mRNA 159 -- 170@LB@Position - sRNA 73 -- 84@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 125 |
0.02168 |
0.5385 |
b3380 |
yhfW |
-9.99 |
0.106098 |
159 -- 190 |
48 -- 81 |
phosphopentomutase-related metalloenzyme superfamily protein |
|
_____________158_________________________________191\n_____________|___________________________________|\n5'-CUC...GAAAU___C___C________GAC___CUU__________UGGGG...GUG-3'\n______________CGU_GGU____GUUAU___AGU___GGAAACUCUC\n______________|||_||:____|||||___|||___:|||||||||\n______________GCA_CCG____CAAUA___UCA___UCUUUGAGAG\n3'-CGC...CAAGU___A___AAAU_____AGC___AC___________CUUUG...AAG-5'\n_____________|___________________________________|\n_____________82__________________________________47\n |
184 -- 190 |
48 -- 54 |
-22.1995 kcal/mol |
7.79728 kcal/mol |
4.41067 kcal/mol |
158 191@LB@ | |@LB@5'-CUC...GAAAU C C GAC CUU UGGGG...GUG-3'@LB@ CGU GGU GUUAU AGU GGAAACUCUC@LB@ ||| ||: ||||| ||| :|||||||||@LB@ GCA CCG CAAUA UCA UCUUUGAGAG@LB@3'-CGC...CAAGU A AAAU AGC AC CUUUG...AAG-5'@LB@ | |@LB@ 82 47@LB@@LB@@LB@Energy -9.99 kcal/mol@LB@Hybridization Energy -22.1995 kcal/mol@LB@Unfolding Energy - mRNA 7.79728 kcal/mol@LB@Unfolding Energy - sRNA 4.41067 kcal/mol@LB@@LB@Position - mRNA 159 -- 190@LB@Position - sRNA 48 -- 81@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 113 |
0.0192 |
0.5385 |
b2573 |
rpoE |
-9.32 |
0.137991 |
165 -- 193 |
49 -- 83 |
RNA polymerase sigma E factor |
|
_____________164___________________________________194\n_____________|_____________________________________|\n5'-ACA...GAUAG________AAA_______UG_________________ACCUC...UGG-3'\n______________CGCG_UGG___UUUGGUU_________GGGAGACUUU\n______________|:||_|||___|||:|||_________|:||:|||:|\n______________GUGC_ACC___AAAUCAA_________CUCUUUGAGA\n3'-CGC...UUCAA____A___G_________UAAGCUCAA__________GCUUU...AAG-5'\n_____________|_____________________________________|\n_____________84____________________________________48\n |
184 -- 190 |
52 -- 58 |
-21.709 kcal/mol |
7.98 kcal/mol |
4.40602 kcal/mol |
164 194@LB@ | |@LB@5'-ACA...GAUAG AAA UG ACCUC...UGG-3'@LB@ CGCG UGG UUUGGUU GGGAGACUUU@LB@ |:|| ||| |||:||| |:||:|||:|@LB@ GUGC ACC AAAUCAA CUCUUUGAGA@LB@3'-CGC...UUCAA A G UAAGCUCAA GCUUU...AAG-5'@LB@ | |@LB@ 84 48@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -21.709 kcal/mol@LB@Unfolding Energy - mRNA 7.98 kcal/mol@LB@Unfolding Energy - sRNA 4.40602 kcal/mol@LB@@LB@Position - mRNA 165 -- 193@LB@Position - sRNA 49 -- 83@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 84 |
0.01516 |
0.5385 |
b1871 |
cmoB |
-9.91 |
0.109770 |
166 -- 183 |
71 -- 87 |
tRNA (cmo5U34)-carboxymethyltransferase carboxy-SAM-dependent |
|
_____________165________________184\n_____________|__________________|\n5'-CAC...ACUUU_______U_G____A___AAAGC...AGC-3'\n______________GGUUCAC_G_UGGC_UUA\n______________:||||||_|_||||_|||\n______________UCAAGUG_C_ACCG_AAU\n3'-CGC...CGUUU_________A____A___CAAUA...AAG-5'\n_____________|__________________|\n_____________88_________________70\n |
166 -- 172 |
81 -- 87 |
-14.4863 kcal/mol |
4.01825 kcal/mol |
0.562376 kcal/mol |
165 184@LB@ | |@LB@5'-CAC...ACUUU U G A AAAGC...AGC-3'@LB@ GGUUCAC G UGGC UUA@LB@ :|||||| | |||| |||@LB@ UCAAGUG C ACCG AAU@LB@3'-CGC...CGUUU A A CAAUA...AAG-5'@LB@ | |@LB@ 88 70@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -14.4863 kcal/mol@LB@Unfolding Energy - mRNA 4.01825 kcal/mol@LB@Unfolding Energy - sRNA 0.562376 kcal/mol@LB@@LB@Position - mRNA 166 -- 183@LB@Position - sRNA 71 -- 87@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 27 |
0.005053 |
0.5385 |
b2058 |
wcaB |
-11.44 |
0.059229 |
168 -- 190 |
61 -- 82 |
putative acyl transferase |
|
_____________167______________________191\n_____________|________________________|\n5'-ACC...GGCAA____C_____GA____________GGCGC...AGA-3'\n______________ACGU_UGGCU__UGG_UAUUCGGG\n______________||||_|||||__|:|_||||||:|\n______________UGCA_ACCGA__AUC_AUAAGCUC\n3'-CGC...UCAAG__________A____A________AACUC...AAG-5'\n_____________|________________________|\n_____________83_______________________60\n |
184 -- 190 |
61 -- 67 |
-21.3941 kcal/mol |
8.91056 kcal/mol |
1.03929 kcal/mol |
167 191@LB@ | |@LB@5'-ACC...GGCAA C GA GGCGC...AGA-3'@LB@ ACGU UGGCU UGG UAUUCGGG@LB@ |||| ||||| |:| ||||||:|@LB@ UGCA ACCGA AUC AUAAGCUC@LB@3'-CGC...UCAAG A A AACUC...AAG-5'@LB@ | |@LB@ 83 60@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -21.3941 kcal/mol@LB@Unfolding Energy - mRNA 8.91056 kcal/mol@LB@Unfolding Energy - sRNA 1.03929 kcal/mol@LB@@LB@Position - mRNA 168 -- 190@LB@Position - sRNA 61 -- 82@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 61 -- 67@LB@ |
