| 1 |
0 |
0 |
b2215 |
ompC |
-25.52 |
0.000001 |
134 -- 186 |
1 -- 70 |
outer membrane porin protein C |
|
_____________133____________________________________________________________________187\n_____________|______________________________________________________________________|\n5'-AUC...GAUUA___AG__UU_____________________________________AAGCA___________________AGAGG...AUC-3'\n______________AUG__GG__AAUCAGU____AUGCAGUGGC__________AUAAAA________AAUAAAGGCAUAUAAC\n______________|||__||__|||||||____|||||:||||__________||||||________||||||||||||||||\n______________UAC__CC__UUAGUCA____UACGUUACCG__________UAUUUU________UUAUUUCCGUAUAUUG\n3'-UUU...AAAUA___AA__UU_______CCGU__________GGUUGUCUUU______AGACACUG________________-5'\n_____________|_____________________________________________________________________|\n_____________71____________________________________________________________________1\n |
180 -- 186 |
1 -- 7 |
-48.3995 kcal/mol |
10.7142 kcal/mol |
12.1618 kcal/mol |
133 187@LB@ | |@LB@5'-AUC...GAUUA AG UU AAGCA AGAGG...AUC-3'@LB@ AUG GG AAUCAGU AUGCAGUGGC AUAAAA AAUAAAGGCAUAUAAC@LB@ ||| || ||||||| |||||:|||| |||||| ||||||||||||||||@LB@ UAC CC UUAGUCA UACGUUACCG UAUUUU UUAUUUCCGUAUAUUG@LB@3'-UUU...AAAUA AA UU CCGU GGUUGUCUUU AGACACUG -5'@LB@ | |@LB@ 71 1@LB@@LB@@LB@Energy -25.52 kcal/mol@LB@Hybridization Energy -48.3995 kcal/mol@LB@Unfolding Energy - mRNA 10.7142 kcal/mol@LB@Unfolding Energy - sRNA 12.1618 kcal/mol@LB@@LB@Position - mRNA 134 -- 186@LB@Position - sRNA 1 -- 70@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 83 |
0.007014 |
0.2822 |
b0815 |
opgE |
-11.11 |
0.070482 |
164 -- 204 |
2 -- 58 |
OPG biosynthetic transmembrane phosphoethanolamine transferase |
|
_____________163________________________________________________________205\n_____________|__________________________________________________________|\n5'-UUU...GACGC_____________C__________________________U_______U_________AUUUA...GCU-3'\n______________CAG_GGUAA_GCA_AUGGC_______________GUUUGU_ACGAUAG_GGCAUAUGA\n______________|||_||:||_|||_|||||_______________:|:|||_||:|||:_|||||||:|\n______________GUC_CCGUU_CGU_UACCG_______________UAGACA_UGUUAUU_CCGUAUAUU\n3'-UUU...UUUUA___A_____A_________GGUUGUCUUUUAUUU______C_______U_________G-5'\n_____________|__________________________________________________________|\n_____________59_________________________________________________________1\n |
197 -- 203 |
3 -- 9 |
-40.5172 kcal/mol |
17.2586 kcal/mol |
12.1475 kcal/mol |
163 205@LB@ | |@LB@5'-UUU...GACGC C U U AUUUA...GCU-3'@LB@ CAG GGUAA GCA AUGGC GUUUGU ACGAUAG GGCAUAUGA@LB@ ||| ||:|| ||| ||||| :|:||| ||:|||: |||||||:|@LB@ GUC CCGUU CGU UACCG UAGACA UGUUAUU CCGUAUAUU@LB@3'-UUU...UUUUA A A GGUUGUCUUUUAUUU C U G-5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -40.5172 kcal/mol@LB@Unfolding Energy - mRNA 17.2586 kcal/mol@LB@Unfolding Energy - sRNA 12.1475 kcal/mol@LB@@LB@Position - mRNA 164 -- 204@LB@Position - sRNA 2 -- 58@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 102 |
0.009578 |
0.3118 |
b1247 |
oppF |
-10.09 |
0.116865 |
264 -- 290 |
39 -- 63 |
oligopeptide ABC transporter ATPase |
|
_____________263__________________________291\n_____________|____________________________|\n5'-GCG...ACUUU______AA__A______A__________UGGCA...CGC-3'\n______________GAAAUC__AG_UGGCAA__CAGUGGUUC\n______________:|||||__||_||||||__||:|||::|\n______________UUUUAG__UC_ACCGUU__GUUACCGGG\n3'-UUU...CAACC_________________AC_________UUGUC...UUG-5'\n_____________|____________________________|\n_____________64___________________________38\n |
284 -- 290 |
39 -- 45 |
-23.4236 kcal/mol |
6.69228 kcal/mol |
6.64584 kcal/mol |
263 291@LB@ | |@LB@5'-GCG...ACUUU AA A A UGGCA...CGC-3'@LB@ GAAAUC AG UGGCAA CAGUGGUUC@LB@ :||||| || |||||| ||:|||::|@LB@ UUUUAG UC ACCGUU GUUACCGGG@LB@3'-UUU...CAACC AC UUGUC...UUG-5'@LB@ | |@LB@ 64 38@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -23.4236 kcal/mol@LB@Unfolding Energy - mRNA 6.69228 kcal/mol@LB@Unfolding Energy - sRNA 6.64584 kcal/mol@LB@@LB@Position - mRNA 264 -- 290@LB@Position - sRNA 39 -- 63@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 35 |
0.002227 |
0.2088 |
b1482 |
osmC |
-7.15 |
0.399399 |
183 -- 208 |
14 -- 42 |
lipoyl-dependent Cys-based peroxidase hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin |
|
_____________182___________________________209\n_____________|_____________________________|\n5'-UAG...UUUAA_____________GCAACAA_________CCAUA...CGU-3'\n______________GCCC_ACAGGAGA_________UGACAAU\n______________||||_||||:|:|_________|||||||\n______________CGGG_UGUCUUUU_________ACUGUUA\n3'-UUU...GUUAC____U________AUUUUAGAC_______UUUCC...UUG-5'\n_____________|_____________________________|\n_____________43____________________________13\n |
202 -- 208 |
14 -- 20 |
-22.1887 kcal/mol |
4.46968 kcal/mol |
10.5676 kcal/mol |
182 209@LB@ | |@LB@5'-UAG...UUUAA GCAACAA CCAUA...CGU-3'@LB@ GCCC ACAGGAGA UGACAAU@LB@ |||| ||||:|:| |||||||@LB@ CGGG UGUCUUUU ACUGUUA@LB@3'-UUU...GUUAC U AUUUUAGAC UUUCC...UUG-5'@LB@ | |@LB@ 43 13@LB@@LB@@LB@Energy -7.15 kcal/mol@LB@Hybridization Energy -22.1887 kcal/mol@LB@Unfolding Energy - mRNA 4.46968 kcal/mol@LB@Unfolding Energy - sRNA 10.5676 kcal/mol@LB@@LB@Position - mRNA 183 -- 208@LB@Position - sRNA 14 -- 42@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 159 |
0.01815 |
0.3828 |
b2418 |
pdxK |
-7.58 |
0.341503 |
51 -- 77 |
38 -- 65 |
pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase |
|
_____________50___________________________78\n_____________|____________________________|\n5'-CAU...AACGG____U____UUA___________A____GACAA...GCA-3'\n______________GGAG_GUCA___GUAGUGUAAUG__CCA\n______________|||:_:|||___|:|:||:||||__|||\n______________CCUU_UAGU___CGUUACGUUAC__GGU\n3'-UUU...UACAA____U____CAC___________CG___UGUCU...UUG-5'\n_____________|____________________________|\n_____________66___________________________37\n |
67 -- 73 |
43 -- 49 |
-23.6415 kcal/mol |
9.38399 kcal/mol |
6.67322 kcal/mol |
50 78@LB@ | |@LB@5'-CAU...AACGG U UUA A GACAA...GCA-3'@LB@ GGAG GUCA GUAGUGUAAUG CCA@LB@ |||: :||| |:|:||:|||| |||@LB@ CCUU UAGU CGUUACGUUAC GGU@LB@3'-UUU...UACAA U CAC CG UGUCU...UUG-5'@LB@ | |@LB@ 66 37@LB@@LB@@LB@Energy -7.58 kcal/mol@LB@Hybridization Energy -23.6415 kcal/mol@LB@Unfolding Energy - mRNA 9.38399 kcal/mol@LB@Unfolding Energy - sRNA 6.67322 kcal/mol@LB@@LB@Position - mRNA 51 -- 77@LB@Position - sRNA 38 -- 65@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 49 |
0.003464 |
0.237 |
b4260 |
pepA |
-9.32 |
0.166975 |
186 -- 204 |
42 -- 59 |
multifunctional aminopeptidase A: a cyteinylglycinase transcription regulator and site-specific recombination factor |
|
_____________185__________________205\n_____________|____________________|\n5'-UUA...AAGAU____GA_C____________AGUUU...AAC-3'\n______________UCAG__G_GUAGUGCA_UGG\n______________||||__|_|:|:||||_|||\n______________AGUC__C_CGUUACGU_ACC\n3'-UUU...CUUUU____A___________U___GGGUU...UUG-5'\n_____________|____________________|\n_____________60___________________41\n |
195 -- 201 |
46 -- 52 |
-17.4947 kcal/mol |
4.48384 kcal/mol |
3.69565 kcal/mol |
185 205@LB@ | |@LB@5'-UUA...AAGAU GA C AGUUU...AAC-3'@LB@ UCAG G GUAGUGCA UGG@LB@ |||| | |:|:|||| |||@LB@ AGUC C CGUUACGU ACC@LB@3'-UUU...CUUUU A U GGGUU...UUG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -17.4947 kcal/mol@LB@Unfolding Energy - mRNA 4.48384 kcal/mol@LB@Unfolding Energy - sRNA 3.69565 kcal/mol@LB@@LB@Position - mRNA 186 -- 204@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 25 |
0.001369 |
0.1841 |
b2599 |
pheA |
-10.09 |
0.116571 |
180 -- 205 |
1 -- 20 |
chorismate mutase and prephenate dehydratase P-protein |
|
_____________179________________________206\n_____________|__________________________|\n5'-UGA...UUUAU______CAA_______ACAC______AUCGG...UCG-3'\n______________UGAUAA___AAAGGCA____UAUGAC\n______________|||:||___|||||||____|||:||\n______________ACUGUU___UUUCCGU____AUAUUG\n3'-UUU...UAGAC______A___________________-5'\n_____________|_________________________|\n_____________21________________________1\n |
189 -- 195 |
7 -- 13 |
-16.49 kcal/mol |
2.17136 kcal/mol |
4.22784 kcal/mol |
179 206@LB@ | |@LB@5'-UGA...UUUAU CAA ACAC AUCGG...UCG-3'@LB@ UGAUAA AAAGGCA UAUGAC@LB@ |||:|| ||||||| |||:||@LB@ ACUGUU UUUCCGU AUAUUG@LB@3'-UUU...UAGAC A -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -16.49 kcal/mol@LB@Unfolding Energy - mRNA 2.17136 kcal/mol@LB@Unfolding Energy - sRNA 4.22784 kcal/mol@LB@@LB@Position - mRNA 180 -- 205@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 193 |
0.02433 |
0.4239 |
b1125 |
potB |
-7.71 |
0.326143 |
48 -- 60 |
50 -- 66 |
spermidine/putrescine ABC transporter permease |
|
_____________47________________61\n_____________|_________________|\n5'-UCG...UGAAC_________________GAUGG...UUG-3'\n______________UGGAAAA____UGGCAA\n______________|||||||____||||||\n______________ACCUUUU____ACCGUU\n3'-UUU...AUACA_______AGUC______ACGUU...UUG-5'\n_____________|_________________|\n_____________67________________49\n |
48 -- 54 |
60 -- 66 |
-13.9172 kcal/mol |
3.09187 kcal/mol |
3.11877 kcal/mol |
47 61@LB@ | |@LB@5'-UCG...UGAAC GAUGG...UUG-3'@LB@ UGGAAAA UGGCAA@LB@ ||||||| ||||||@LB@ ACCUUUU ACCGUU@LB@3'-UUU...AUACA AGUC ACGUU...UUG-5'@LB@ | |@LB@ 67 49@LB@@LB@@LB@Energy -7.71 kcal/mol@LB@Hybridization Energy -13.9172 kcal/mol@LB@Unfolding Energy - mRNA 3.09187 kcal/mol@LB@Unfolding Energy - sRNA 3.11877 kcal/mol@LB@@LB@Position - mRNA 48 -- 60@LB@Position - sRNA 50 -- 66@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 37 |
0.002433 |
0.2088 |
b2825 |
ppdB |
-7.88 |
0.305516 |
133 -- 146 |
40 -- 54 |
putative prepilin peptidase-dependent protein |
|
_____________132_____________147\n_____________|_______________|\n5'-CAU...CAACG_______________GGUGG...CGU-3'\n______________GGCGA_GUGGUGGCU\n______________|||:|_|:::||||:\n______________CCGUU_CGUUACCGG\n3'-UUU...AGUCA_____A_________GUUGU...UUG-5'\n_____________|_______________|\n_____________55______________39\n |
140 -- 146 |
40 -- 46 |
-19.4494 kcal/mol |
6.98652 kcal/mol |
4.58617 kcal/mol |
132 147@LB@ | |@LB@5'-CAU...CAACG GGUGG...CGU-3'@LB@ GGCGA GUGGUGGCU@LB@ |||:| |:::||||:@LB@ CCGUU CGUUACCGG@LB@3'-UUU...AGUCA A GUUGU...UUG-5'@LB@ | |@LB@ 55 39@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -19.4494 kcal/mol@LB@Unfolding Energy - mRNA 6.98652 kcal/mol@LB@Unfolding Energy - sRNA 4.58617 kcal/mol@LB@@LB@Position - mRNA 133 -- 146@LB@Position - sRNA 40 -- 54@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 188 |
0.02326 |
0.4145 |
b2501 |
ppk |
-10.84 |
0.080977 |
186 -- 203 |
48 -- 65 |
polyphosphate kinase component of RNA degradosome |
|
_____________185________________204\n_____________|__________________|\n5'-CGC...AAAAC____UAAA__________GGUCA...UUG-3'\n______________GGAG____AGUGGUAAUG\n______________|||:____|||||:||||\n______________CCUU____UCACCGUUAC\n3'-UUU...UACAA____UUAG__________GUUAC...UUG-5'\n_____________|__________________|\n_____________66_________________47\n |
197 -- 203 |
48 -- 54 |
-18.775 kcal/mol |
3.93073 kcal/mol |
4.00814 kcal/mol |
185 204@LB@ | |@LB@5'-CGC...AAAAC UAAA GGUCA...UUG-3'@LB@ GGAG AGUGGUAAUG@LB@ |||: |||||:||||@LB@ CCUU UCACCGUUAC@LB@3'-UUU...UACAA UUAG GUUAC...UUG-5'@LB@ | |@LB@ 66 47@LB@@LB@@LB@Energy -10.84 kcal/mol@LB@Hybridization Energy -18.775 kcal/mol@LB@Unfolding Energy - mRNA 3.93073 kcal/mol@LB@Unfolding Energy - sRNA 4.00814 kcal/mol@LB@@LB@Position - mRNA 186 -- 203@LB@Position - sRNA 48 -- 65@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 48 -- 54@LB@ |
