| 127 |
0.01373 |
0.3614 |
b0463 |
acrA |
-13.78 |
0.016343 |
252 -- 289 |
8 -- 54 |
multidrug efflux system |
|
_____________251________________________________________________290\n_____________|__________________________________________________|\n5'-GCC...UCUCA________UUA_____U________________________C__AC____CCAAC...GUG-3'\n______________GGCA__GC____GCCC_AACAGGA_________UGUGACGA_AA__AGGC\n______________||||__||____||||_|||||:|_________||||||:|_||__||||\n______________CCGU__CG____CGGG_UUGUCUU_________ACACUGUU_UU__UCCG\n3'-UUU...AGUCA____UA__UUAC____________UUAUUUUAG________A________UAUAUUG-5'\n_____________|__________________________________________________|\n_____________55_________________________________________________7\n |
274 -- 280 |
15 -- 21 |
-34.7713 kcal/mol |
8.97181 kcal/mol |
12.019 kcal/mol |
251 290@LB@ | |@LB@5'-GCC...UCUCA UUA U C AC CCAAC...GUG-3'@LB@ GGCA GC GCCC AACAGGA UGUGACGA AA AGGC@LB@ |||| || |||| |||||:| ||||||:| || ||||@LB@ CCGU CG CGGG UUGUCUU ACACUGUU UU UCCG@LB@3'-UUU...AGUCA UA UUAC UUAUUUUAG A UAUAUUG-5'@LB@ | |@LB@ 55 7@LB@@LB@@LB@Energy -13.78 kcal/mol@LB@Hybridization Energy -34.7713 kcal/mol@LB@Unfolding Energy - mRNA 8.97181 kcal/mol@LB@Unfolding Energy - sRNA 12.019 kcal/mol@LB@@LB@Position - mRNA 252 -- 289@LB@Position - sRNA 8 -- 54@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 167 |
0.01994 |
0.3993 |
b1982 |
amn |
-7.06 |
0.411594 |
174 -- 215 |
8 -- 54 |
AMP nucleosidase |
|
_____________173______________________________________________216\n_____________|________________________________________________|\n5'-UUU...UGUGC_____U____________________CACACA___A____________UCCGG...GCA-3'\n______________GGUAA_UGU_AUGG___AACAGGAGA_______UG__AUAAUAAGGGC\n______________||:||_||:_||||___|||||:|:|_______||__|:|||||:|||\n______________CCGUU_ACG_UACC___UUGUCUUUU_______AC__UGUUAUUUCCG\n3'-UUU...AGUCA_________U____GGG_________AUUUUAG__AC___________UAUAUUG-5'\n_____________|________________________________________________|\n_____________55_______________________________________________7\n |
209 -- 215 |
8 -- 14 |
-29.9928 kcal/mol |
10.9089 kcal/mol |
12.019 kcal/mol |
173 216@LB@ | |@LB@5'-UUU...UGUGC U CACACA A UCCGG...GCA-3'@LB@ GGUAA UGU AUGG AACAGGAGA UG AUAAUAAGGGC@LB@ ||:|| ||: |||| |||||:|:| || |:|||||:|||@LB@ CCGUU ACG UACC UUGUCUUUU AC UGUUAUUUCCG@LB@3'-UUU...AGUCA U GGG AUUUUAG AC UAUAUUG-5'@LB@ | |@LB@ 55 7@LB@@LB@@LB@Energy -7.06 kcal/mol@LB@Hybridization Energy -29.9928 kcal/mol@LB@Unfolding Energy - mRNA 10.9089 kcal/mol@LB@Unfolding Energy - sRNA 12.019 kcal/mol@LB@@LB@Position - mRNA 174 -- 215@LB@Position - sRNA 8 -- 54@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 65 |
0.005052 |
0.2614 |
b0451 |
amtB |
-9.90 |
0.127883 |
170 -- 220 |
11 -- 61 |
ammonium transporter |
|
_____________169____________________________________________________221\n_____________|______________________________________________________|\n5'-CCA...GCUGU____UC_____CACA____CA__AA_______________AUA_C_________AACUG...CGU-3'\n______________AAUC__UGGCA____GCAA__GG__CGA___AAAAUGAAG___G_GACGAUAAA\n______________||||__|||||____||||__||__|:|___|||||:||:___|_|||:|||||\n______________UUAG__ACCGU____CGUU__CC__GUU___UUUUAUUUU___C_CUGUUAUUU\n3'-UUU...ACCUU____UC_____UA______A___GG___GUC_________AGA_A_________CCGUA...UUG-5'\n_____________|______________________________________________________|\n_____________62_____________________________________________________10\n |
214 -- 220 |
11 -- 17 |
-30.4323 kcal/mol |
9.41224 kcal/mol |
11.1248 kcal/mol |
169 221@LB@ | |@LB@5'-CCA...GCUGU UC CACA CA AA AUA C AACUG...CGU-3'@LB@ AAUC UGGCA GCAA GG CGA AAAAUGAAG G GACGAUAAA@LB@ |||| ||||| |||| || |:| |||||:||: | |||:|||||@LB@ UUAG ACCGU CGUU CC GUU UUUUAUUUU C CUGUUAUUU@LB@3'-UUU...ACCUU UC UA A GG GUC AGA A CCGUA...UUG-5'@LB@ | |@LB@ 62 10@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -30.4323 kcal/mol@LB@Unfolding Energy - mRNA 9.41224 kcal/mol@LB@Unfolding Energy - sRNA 11.1248 kcal/mol@LB@@LB@Position - mRNA 170 -- 220@LB@Position - sRNA 11 -- 61@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 110 |
0.01026 |
0.313 |
b0063 |
araB |
-12.48 |
0.034183 |
202 -- 260 |
1 -- 55 |
L-ribulokinase |
|
_____________201___________________________________________________________261\n_____________|_____________________________________________________________|\n5'-CGG...AACGA_______U____U_____U____UUU__C_____U___________GCUUU____GUG___UGCGC...GGU-3'\n______________UGGCGAU_GCAA_UGGCC_CGAU___GG_AGUGA__UCUGUG_CGA_____GGCG___GAC\n______________||||:||_||||_|||||_|:|:___|:_|:|:|__||||||_|:|_____|||:___:||\n______________ACCGUUA_CGUU_ACCGG_GUUG___CU_UUAUU__AGACAC_GUU_____CCGU___UUG\n3'-UUU...UAGUC_______________________U____U_____UU______U___AUUU_____AUA___-5'\n_____________|____________________________________________________________|\n_____________56___________________________________________________________1\n |
202 -- 208 |
49 -- 55 |
-46.0779 kcal/mol |
21.5533 kcal/mol |
12.0455 kcal/mol |
201 261@LB@ | |@LB@5'-CGG...AACGA U U U UUU C U GCUUU GUG UGCGC...GGU-3'@LB@ UGGCGAU GCAA UGGCC CGAU GG AGUGA UCUGUG CGA GGCG GAC@LB@ ||||:|| |||| ||||| |:|: |: |:|:| |||||| |:| |||: :||@LB@ ACCGUUA CGUU ACCGG GUUG CU UUAUU AGACAC GUU CCGU UUG@LB@3'-UUU...UAGUC U U UU U AUUU AUA -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -46.0779 kcal/mol@LB@Unfolding Energy - mRNA 21.5533 kcal/mol@LB@Unfolding Energy - sRNA 12.0455 kcal/mol@LB@@LB@Position - mRNA 202 -- 260@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 161 |
0.01858 |
0.3864 |
b3237 |
argR |
-5.47 |
0.658327 |
53 -- 70 |
1 -- 21 |
l-arginine-responsive arginine metabolism regulon transcriptional regulator |
|
_____________52____________________71\n_____________|_____________________|\n5'-ACA...AUGCC______C___________UU_UCAAU...UGC-3'\n______________GUGACG____AGGCAUGU__C\n______________|||||:____||||||:|__|\n______________CACUGU____UCCGUAUA__G\n3'-UUU...UUAGA______UAUU________UU_-5'\n_____________|____________________|\n_____________22___________________1\n |
61 -- 67 |
4 -- 10 |
-16.8661 kcal/mol |
6.97949 kcal/mol |
4.41334 kcal/mol |
52 71@LB@ | |@LB@5'-ACA...AUGCC C UU UCAAU...UGC-3'@LB@ GUGACG AGGCAUGU C@LB@ |||||: ||||||:| |@LB@ CACUGU UCCGUAUA G@LB@3'-UUU...UUAGA UAUU UU -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -5.47 kcal/mol@LB@Hybridization Energy -16.8661 kcal/mol@LB@Unfolding Energy - mRNA 6.97949 kcal/mol@LB@Unfolding Energy - sRNA 4.41334 kcal/mol@LB@@LB@Position - mRNA 53 -- 70@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 60 |
0.004583 |
0.2539 |
b0674 |
asnB |
-9.07 |
0.186262 |
281 -- 298 |
39 -- 51 |
asparagine synthetase B |
|
_____________280________________299\n_____________|__________________|\n5'-ACA...CGCCU______UCAUC_______GG-3'\n______________GAUGCG_____GUGGCCC\n______________:||||:_____:||||||\n______________UUACGU_____UACCGGG\n3'-UUU...CACCG__________________UUGUC...UUG-5'\n_____________|__________________|\n_____________52_________________38\n |
292 -- 298 |
39 -- 45 |
-18.7239 kcal/mol |
4.90882 kcal/mol |
4.74571 kcal/mol |
280 299@LB@ | |@LB@5'-ACA...CGCCU UCAUC GG-3'@LB@ GAUGCG GUGGCCC@LB@ :||||: :||||||@LB@ UUACGU UACCGGG@LB@3'-UUU...CACCG UUGUC...UUG-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -9.07 kcal/mol@LB@Hybridization Energy -18.7239 kcal/mol@LB@Unfolding Energy - mRNA 4.90882 kcal/mol@LB@Unfolding Energy - sRNA 4.74571 kcal/mol@LB@@LB@Position - mRNA 281 -- 298@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 78 |
0.006706 |
0.2822 |
b3738 |
atpB |
-10.93 |
0.077303 |
188 -- 216 |
28 -- 54 |
F0 sector of membrane-bound ATP synthase subunit a |
|
_____________187_____________________________217\n_____________|_______________________________|\n5'-CAU...CAAAG_____AAG___UC__________________UGACG...ACC-3'\n______________GGUAA___GCA__AUGGCUU__CAGAAAAUA\n______________||:||___|||__|||||::__|||||||||\n______________CCGUU___CGU__UACCGGG__GUCUUUUAU\n3'-UUU...AGUCA_____A______________UU_________UUUAG...UUG-5'\n_____________|_______________________________|\n_____________55______________________________27\n |
201 -- 207 |
39 -- 45 |
-24.7477 kcal/mol |
4.83623 kcal/mol |
8.98285 kcal/mol |
187 217@LB@ | |@LB@5'-CAU...CAAAG AAG UC UGACG...ACC-3'@LB@ GGUAA GCA AUGGCUU CAGAAAAUA@LB@ ||:|| ||| |||||:: |||||||||@LB@ CCGUU CGU UACCGGG GUCUUUUAU@LB@3'-UUU...AGUCA A UU UUUAG...UUG-5'@LB@ | |@LB@ 55 27@LB@@LB@@LB@Energy -10.93 kcal/mol@LB@Hybridization Energy -24.7477 kcal/mol@LB@Unfolding Energy - mRNA 4.83623 kcal/mol@LB@Unfolding Energy - sRNA 8.98285 kcal/mol@LB@@LB@Position - mRNA 188 -- 216@LB@Position - sRNA 28 -- 54@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 144 |
0.01658 |
0.3828 |
b3731 |
atpC |
-9.12 |
0.181998 |
70 -- 89 |
6 -- 25 |
F1 sector of membrane-bound ATP synthase epsilon subunit |
|
_____________69___________________90\n_____________|____________________|\n5'-UCC...ACACC___C_____UU_________CAUGG...UGG-3'\n______________AUC_GUGGC__UAAAGGCAU\n______________|||_|||:|__|||||||||\n______________UAG_CACUG__AUUUCCGUA\n3'-UUU...UAUUU___A_____UU_________UAUUG-5'\n_____________|____________________|\n_____________26___________________5\n |
83 -- 89 |
6 -- 12 |
-21.8685 kcal/mol |
8.00712 kcal/mol |
4.73944 kcal/mol |
69 90@LB@ | |@LB@5'-UCC...ACACC C UU CAUGG...UGG-3'@LB@ AUC GUGGC UAAAGGCAU@LB@ ||| |||:| |||||||||@LB@ UAG CACUG AUUUCCGUA@LB@3'-UUU...UAUUU A UU UAUUG-5'@LB@ | |@LB@ 26 5@LB@@LB@@LB@Energy -9.12 kcal/mol@LB@Hybridization Energy -21.8685 kcal/mol@LB@Unfolding Energy - mRNA 8.00712 kcal/mol@LB@Unfolding Energy - sRNA 4.73944 kcal/mol@LB@@LB@Position - mRNA 70 -- 89@LB@Position - sRNA 6 -- 25@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 126 |
0.01341 |
0.3578 |
b3572 |
avtA |
-7.69 |
0.327921 |
259 -- 267 |
58 -- 66 |
valine-pyruvate aminotransferase; transaminase C; alanine-valine transaminase |
|
_____________258_______268\n_____________|_________|\n5'-UCG...GUUGA_________UGAAC...UUA-3'\n______________UGGAAGAUC\n______________|||||:|||\n______________ACCUUUUAG\n3'-UUU...AUACA_________UCACC...UUG-5'\n_____________|_________|\n_____________67________57\n |
261 -- 267 |
58 -- 64 |
-10.9576 kcal/mol |
2.42155 kcal/mol |
0.843879 kcal/mol |
258 268@LB@ | |@LB@5'-UCG...GUUGA UGAAC...UUA-3'@LB@ UGGAAGAUC@LB@ |||||:|||@LB@ ACCUUUUAG@LB@3'-UUU...AUACA UCACC...UUG-5'@LB@ | |@LB@ 67 57@LB@@LB@@LB@Energy -7.69 kcal/mol@LB@Hybridization Energy -10.9576 kcal/mol@LB@Unfolding Energy - mRNA 2.42155 kcal/mol@LB@Unfolding Energy - sRNA 0.843879 kcal/mol@LB@@LB@Position - mRNA 259 -- 267@LB@Position - sRNA 58 -- 66@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 17 |
0.0007572 |
0.1438 |
b2512 |
bamB |
-10.25 |
0.108120 |
60 -- 97 |
8 -- 56 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________59________________________________________________98\n_____________|_________________________________________________|\n5'-GCU...CCUGC_______A___U_____G____AAG_________________GC_____GCGCG...CCC-3'\n______________GUGGUGA_GCA_U_GCU_AGCA_____________GUGAUAA__AAGGU\n______________||||::|_|||_|_||:_|:||_____________||||:||__||||:\n______________CACCGUU_CGU_A_CGG_UUGU_____________CACUGUU__UUCCG\n3'-UUU...UUAGU_______A___U_C___G____CUUUUAUUUUAGA_______AU_____UAUAUUG-5'\n_____________|_________________________________________________|\n_____________57________________________________________________7\n |
84 -- 90 |
15 -- 21 |
-31.6141 kcal/mol |
9.34469 kcal/mol |
12.0216 kcal/mol |
59 98@LB@ | |@LB@5'-GCU...CCUGC A U G AAG GC GCGCG...CCC-3'@LB@ GUGGUGA GCA U GCU AGCA GUGAUAA AAGGU@LB@ ||||::| ||| | ||: |:|| ||||:|| ||||:@LB@ CACCGUU CGU A CGG UUGU CACUGUU UUCCG@LB@3'-UUU...UUAGU A U C G CUUUUAUUUUAGA AU UAUAUUG-5'@LB@ | |@LB@ 57 7@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -31.6141 kcal/mol@LB@Unfolding Energy - mRNA 9.34469 kcal/mol@LB@Unfolding Energy - sRNA 12.0216 kcal/mol@LB@@LB@Position - mRNA 60 -- 97@LB@Position - sRNA 8 -- 56@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 15 -- 21@LB@ |
