| 48 |
0.003417 |
0.237 |
b0002 |
thrA |
-15.68 |
0.005086 |
222 -- 242 |
46 -- 65 |
Bifunctional aspartokinase/homoserine dehydrogenase 1 |
|
_____________221___________________243\n_____________|_____________________|\n5'-CCA...UCGGC__UAC___________A____GAACG...UGG-3'\n______________GG___AUCAGUGGCAA_UGCA\n______________||___|||||||||||_||||\n______________CC___UAGUCACCGUU_ACGU\n3'-UUU...UACAA__UUU________________UACCG...UUG-5'\n_____________|_____________________|\n_____________66____________________45\n |
231 -- 237 |
50 -- 56 |
-24.9116 kcal/mol |
5.14883 kcal/mol |
4.07994 kcal/mol |
221 243@LB@ | |@LB@5'-CCA...UCGGC UAC A GAACG...UGG-3'@LB@ GG AUCAGUGGCAA UGCA@LB@ || ||||||||||| ||||@LB@ CC UAGUCACCGUU ACGU@LB@3'-UUU...UACAA UUU UACCG...UUG-5'@LB@ | |@LB@ 66 45@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -24.9116 kcal/mol@LB@Unfolding Energy - mRNA 5.14883 kcal/mol@LB@Unfolding Energy - sRNA 4.07994 kcal/mol@LB@@LB@Position - mRNA 222 -- 242@LB@Position - sRNA 46 -- 65@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 163 |
0.01899 |
0.3918 |
b0037 |
caiC |
-9.20 |
0.176089 |
195 -- 204 |
42 -- 51 |
putative crotonobetaine/carnitine-CoA ligase |
|
_____________194________205\n_____________|__________|\n5'-CGG...AUAGA__________AUAUC...GAG-3'\n______________GGUGCAAUGG\n______________::||||||||\n______________UUACGUUACC\n3'-UUU...CACCG__________GGGUU...UUG-5'\n_____________|__________|\n_____________52_________41\n |
198 -- 204 |
42 -- 48 |
-13.9036 kcal/mol |
2.50026 kcal/mol |
2.20704 kcal/mol |
194 205@LB@ | |@LB@5'-CGG...AUAGA AUAUC...GAG-3'@LB@ GGUGCAAUGG@LB@ ::||||||||@LB@ UUACGUUACC@LB@3'-UUU...CACCG GGGUU...UUG-5'@LB@ | |@LB@ 52 41@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -13.9036 kcal/mol@LB@Unfolding Energy - mRNA 2.50026 kcal/mol@LB@Unfolding Energy - sRNA 2.20704 kcal/mol@LB@@LB@Position - mRNA 195 -- 204@LB@Position - sRNA 42 -- 51@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 13 |
0.0005138 |
0.1268 |
b0055 |
djlA |
-16.40 |
0.003186 |
213 -- 240 |
39 -- 65 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________212__________________________241\n_____________|____________________________|\n5'-GAC...AUUGG__A_______U_____UG__C_______UACUG...UUG-3'\n______________GG_AAAAUCA_UGGCG__GC_GUGGCCU\n______________||_|||||||_||||:__||_:|||||:\n______________CC_UUUUAGU_ACCGU__CG_UACCGGG\n3'-UUU...UACAA__________C_____UA__U_______UUGUC...UUG-5'\n_____________|____________________________|\n_____________66___________________________38\n |
234 -- 240 |
39 -- 45 |
-30.8595 kcal/mol |
7.7929 kcal/mol |
6.66922 kcal/mol |
212 241@LB@ | |@LB@5'-GAC...AUUGG A U UG C UACUG...UUG-3'@LB@ GG AAAAUCA UGGCG GC GUGGCCU@LB@ || ||||||| ||||: || :|||||:@LB@ CC UUUUAGU ACCGU CG UACCGGG@LB@3'-UUU...UACAA C UA U UUGUC...UUG-5'@LB@ | |@LB@ 66 38@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -30.8595 kcal/mol@LB@Unfolding Energy - mRNA 7.7929 kcal/mol@LB@Unfolding Energy - sRNA 6.66922 kcal/mol@LB@@LB@Position - mRNA 213 -- 240@LB@Position - sRNA 39 -- 65@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 110 |
0.01026 |
0.313 |
b0063 |
araB |
-12.48 |
0.034183 |
202 -- 260 |
1 -- 55 |
L-ribulokinase |
|
_____________201___________________________________________________________261\n_____________|_____________________________________________________________|\n5'-CGG...AACGA_______U____U_____U____UUU__C_____U___________GCUUU____GUG___UGCGC...GGU-3'\n______________UGGCGAU_GCAA_UGGCC_CGAU___GG_AGUGA__UCUGUG_CGA_____GGCG___GAC\n______________||||:||_||||_|||||_|:|:___|:_|:|:|__||||||_|:|_____|||:___:||\n______________ACCGUUA_CGUU_ACCGG_GUUG___CU_UUAUU__AGACAC_GUU_____CCGU___UUG\n3'-UUU...UAGUC_______________________U____U_____UU______U___AUUU_____AUA___-5'\n_____________|____________________________________________________________|\n_____________56___________________________________________________________1\n |
202 -- 208 |
49 -- 55 |
-46.0779 kcal/mol |
21.5533 kcal/mol |
12.0455 kcal/mol |
201 261@LB@ | |@LB@5'-CGG...AACGA U U U UUU C U GCUUU GUG UGCGC...GGU-3'@LB@ UGGCGAU GCAA UGGCC CGAU GG AGUGA UCUGUG CGA GGCG GAC@LB@ ||||:|| |||| ||||| |:|: |: |:|:| |||||| |:| |||: :||@LB@ ACCGUUA CGUU ACCGG GUUG CU UUAUU AGACAC GUU CCGU UUG@LB@3'-UUU...UAGUC U U UU U AUUU AUA -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -46.0779 kcal/mol@LB@Unfolding Energy - mRNA 21.5533 kcal/mol@LB@Unfolding Energy - sRNA 12.0455 kcal/mol@LB@@LB@Position - mRNA 202 -- 260@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 34 |
0.002116 |
0.2088 |
b0081 |
mraZ |
-11.86 |
0.047767 |
154 -- 189 |
9 -- 59 |
RsmH methytransferase inhibitor |
|
_____________153___________________________________________________190\n_____________|_____________________________________________________|\n5'-GAU...UCCUU_______G__AU_________AA_____________________G________GUGAG...AAA-3'\n______________UCAGUGG_AA__UGUGG_GGC__A________________GUGG_AAUAAGGG\n______________|||||||_||__||:::_|||__|________________|||:_|||||:||\n______________AGUCACC_UU__ACGUU_CCG__U________________CACU_UUAUUUCC\n3'-UUU...CUUUU_______G_________A___GG_UGUCUUUUAUUUUAGA____G________GUAUAUUG-5'\n_____________|_____________________________________________________|\n_____________60____________________________________________________8\n |
183 -- 189 |
9 -- 15 |
-29.7093 kcal/mol |
6.7157 kcal/mol |
11.1344 kcal/mol |
153 190@LB@ | |@LB@5'-GAU...UCCUU G AU AA G GUGAG...AAA-3'@LB@ UCAGUGG AA UGUGG GGC A GUGG AAUAAGGG@LB@ ||||||| || ||::: ||| | |||: |||||:||@LB@ AGUCACC UU ACGUU CCG U CACU UUAUUUCC@LB@3'-UUU...CUUUU G A GG UGUCUUUUAUUUUAGA G GUAUAUUG-5'@LB@ | |@LB@ 60 8@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -29.7093 kcal/mol@LB@Unfolding Energy - mRNA 6.7157 kcal/mol@LB@Unfolding Energy - sRNA 11.1344 kcal/mol@LB@@LB@Position - mRNA 154 -- 189@LB@Position - sRNA 9 -- 59@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 27 |
0.001616 |
0.2012 |
b0085 |
murE |
-13.53 |
0.018874 |
165 -- 198 |
1 -- 33 |
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase |
|
_____________164_________________________________199\n_____________|___________________________________|\n5'-UGC...CGAUA_________________U___C______AGGG___AGGUG...CGG-3'\n______________AAAAU_GAAUUUGUGAU_AAU_AAGGCG____GAC\n______________|||||_:|||:|||||:_|||_|||||:____:||\n______________UUUUA_UUUAGACACUG_UUA_UUCCGU____UUG\n3'-UUU...UUGUC_____U_______________U______AUA____-5'\n_____________|__________________________________|\n_____________34_________________________________1\n |
174 -- 180 |
17 -- 23 |
-22.2929 kcal/mol |
3.71145 kcal/mol |
5.04823 kcal/mol |
164 199@LB@ | |@LB@5'-UGC...CGAUA U C AGGG AGGUG...CGG-3'@LB@ AAAAU GAAUUUGUGAU AAU AAGGCG GAC@LB@ ||||| :|||:|||||: ||| |||||: :||@LB@ UUUUA UUUAGACACUG UUA UUCCGU UUG@LB@3'-UUU...UUGUC U U AUA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -22.2929 kcal/mol@LB@Unfolding Energy - mRNA 3.71145 kcal/mol@LB@Unfolding Energy - sRNA 5.04823 kcal/mol@LB@@LB@Position - mRNA 165 -- 198@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 59 |
0.004284 |
0.2442 |
b0094 |
ftsA |
-10.23 |
0.109208 |
176 -- 218 |
1 -- 63 |
ATP-binding cell division FtsK recruitment protein |
|
_____________175________________________________________________________________219\n_____________|__________________________________________________________________|\n5'-AAU...GCAAC__________________CA___AG___________________________UCA_____ACG___AGAAA...UCA-3'\n______________AAAAUCAG_______GCA__GGC__AACA________________ACAAUGA___AGGCG___GAC\n______________||||||||_______|||__|||__||||________________|||||:|___||||:___:||\n______________UUUUAGUC_______CGU__CCG__UUGU________________UGUUAUU___UCCGU___UUG\n3'-UUU...CAACC________ACCGUUA___UA___GG____CUUUUAUUUUAGACAC_______________AUA___-5'\n_____________|_________________________________________________________________|\n_____________64________________________________________________________________1\n |
198 -- 204 |
12 -- 18 |
-27.1283 kcal/mol |
4.74085 kcal/mol |
12.1605 kcal/mol |
175 219@LB@ | |@LB@5'-AAU...GCAAC CA AG UCA ACG AGAAA...UCA-3'@LB@ AAAAUCAG GCA GGC AACA ACAAUGA AGGCG GAC@LB@ |||||||| ||| ||| |||| |||||:| ||||: :||@LB@ UUUUAGUC CGU CCG UUGU UGUUAUU UCCGU UUG@LB@3'-UUU...CAACC ACCGUUA UA GG CUUUUAUUUUAGACAC AUA -5'@LB@ | |@LB@ 64 1@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -27.1283 kcal/mol@LB@Unfolding Energy - mRNA 4.74085 kcal/mol@LB@Unfolding Energy - sRNA 12.1605 kcal/mol@LB@@LB@Position - mRNA 176 -- 218@LB@Position - sRNA 1 -- 63@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 160 |
0.01821 |
0.3828 |
b0106 |
hofC |
-9.30 |
0.168390 |
246 -- 262 |
42 -- 54 |
assembly protein in type IV pilin biogenesis transmembrane protein |
|
_____________245_______________263\n_____________|_________________|\n5'-UUA...GCGAC________GCAA_____GAUGC...UGG-3'\n______________GGCAAUGC____GAUGG\n______________||||||||____:||||\n______________CCGUUACG____UUACC\n3'-UUU...AGUCA_________________GGGUU...UUG-5'\n_____________|_________________|\n_____________55________________41\n |
247 -- 253 |
47 -- 53 |
-17.2549 kcal/mol |
4.45921 kcal/mol |
3.49932 kcal/mol |
245 263@LB@ | |@LB@5'-UUA...GCGAC GCAA GAUGC...UGG-3'@LB@ GGCAAUGC GAUGG@LB@ |||||||| :||||@LB@ CCGUUACG UUACC@LB@3'-UUU...AGUCA GGGUU...UUG-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -9.30 kcal/mol@LB@Hybridization Energy -17.2549 kcal/mol@LB@Unfolding Energy - mRNA 4.45921 kcal/mol@LB@Unfolding Energy - sRNA 3.49932 kcal/mol@LB@@LB@Position - mRNA 246 -- 262@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 140 |
0.01599 |
0.3828 |
b0119 |
yacL |
-11.32 |
0.063485 |
266 -- 299 |
25 -- 57 |
UPF0231 family protein |
|
_____________265_________________________________300\n_____________|___________________________________|\n5'-GGU...CAUGA______CGG___C_________GA___________G-3'\n______________AGUGGU___GCA_UGGUUUAAU__AGA_GGUGAAA\n______________|||||:___|||_|||:::||:__|||_::|:|||\n______________UCACCG___CGU_ACCGGGUUG__UCU_UUAUUUU\n3'-UUU...UUUAG______UUA___U______________U_______AGACA...UUG-5'\n_____________|___________________________________|\n_____________58__________________________________24\n |
293 -- 299 |
25 -- 31 |
-25.5028 kcal/mol |
4.248 kcal/mol |
9.93955 kcal/mol |
265 300@LB@ | |@LB@5'-GGU...CAUGA CGG C GA G-3'@LB@ AGUGGU GCA UGGUUUAAU AGA GGUGAAA@LB@ |||||: ||| |||:::||: ||| ::|:|||@LB@ UCACCG CGU ACCGGGUUG UCU UUAUUUU@LB@3'-UUU...UUUAG UUA U U AGACA...UUG-5'@LB@ | |@LB@ 58 24@LB@@LB@@LB@Energy -11.32 kcal/mol@LB@Hybridization Energy -25.5028 kcal/mol@LB@Unfolding Energy - mRNA 4.248 kcal/mol@LB@Unfolding Energy - sRNA 9.93955 kcal/mol@LB@@LB@Position - mRNA 266 -- 299@LB@Position - sRNA 25 -- 57@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 158 |
0.01805 |
0.3828 |
b0159 |
mtn |
-12.15 |
0.040782 |
203 -- 232 |
30 -- 64 |
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase |
|
_____________202_________________________________233\n_____________|___________________________________|\n5'-GAU...UCUAU______________U____U____G__________AGAAG...UCU-3'\n______________GAAAAUC___GGCA___CA_UGGU_CAAUGGAAGA\n______________|||||||___||||___||_|||:_|||::|||:|\n______________CUUUUAG___CCGU___GU_ACCG_GUUGUCUUUU\n3'-UUU...ACAAC_______UCA____UAC__U____G__________AUUUU...UUG-5'\n_____________|___________________________________|\n_____________65__________________________________29\n |
203 -- 209 |
58 -- 64 |
-29.7028 kcal/mol |
6.58654 kcal/mol |
10.9617 kcal/mol |
202 233@LB@ | |@LB@5'-GAU...UCUAU U U G AGAAG...UCU-3'@LB@ GAAAAUC GGCA CA UGGU CAAUGGAAGA@LB@ ||||||| |||| || |||: |||::|||:|@LB@ CUUUUAG CCGU GU ACCG GUUGUCUUUU@LB@3'-UUU...ACAAC UCA UAC U G AUUUU...UUG-5'@LB@ | |@LB@ 65 29@LB@@LB@@LB@Energy -12.15 kcal/mol@LB@Hybridization Energy -29.7028 kcal/mol@LB@Unfolding Energy - mRNA 6.58654 kcal/mol@LB@Unfolding Energy - sRNA 10.9617 kcal/mol@LB@@LB@Position - mRNA 203 -- 232@LB@Position - sRNA 30 -- 64@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 58 -- 64@LB@ |
