| 137 |
0.01537 |
0.3774 |
b0952 |
pqiC |
-8.31 |
0.257066 |
203 -- 237 |
17 -- 64 |
DUF330 family putative lipoprotein |
|
_____________202________________________________________________238\n_____________|__________________________________________________|\n5'-ACG...ACAAU_____________U____A_______G_______________________UGGCC...GCG-3'\n______________GAAAA__AGUGGC_AGUG_CGAU__U_CAGCA___________CUGUGGC\n______________|||||__||||||_|:||_|:||__:_||:||___________|||||:|\n______________CUUUU__UCACCG_UUAC_GUUA__G_GUUGU___________GACACUG\n3'-UUU...ACAAC_____AG________________CC_G_____CUUUUAUUUUA_______UUAUU...UUG-5'\n_____________|__________________________________________________|\n_____________65_________________________________________________16\n |
231 -- 237 |
17 -- 23 |
-29.1693 kcal/mol |
9.7543 kcal/mol |
11.1047 kcal/mol |
202 238@LB@ | |@LB@5'-ACG...ACAAU U A G UGGCC...GCG-3'@LB@ GAAAA AGUGGC AGUG CGAU U CAGCA CUGUGGC@LB@ ||||| |||||| |:|| |:|| : ||:|| |||||:|@LB@ CUUUU UCACCG UUAC GUUA G GUUGU GACACUG@LB@3'-UUU...ACAAC AG CC G CUUUUAUUUUA UUAUU...UUG-5'@LB@ | |@LB@ 65 16@LB@@LB@@LB@Energy -8.31 kcal/mol@LB@Hybridization Energy -29.1693 kcal/mol@LB@Unfolding Energy - mRNA 9.7543 kcal/mol@LB@Unfolding Energy - sRNA 11.1047 kcal/mol@LB@@LB@Position - mRNA 203 -- 237@LB@Position - sRNA 17 -- 64@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 11 |
0.000438 |
0.1262 |
b0467 |
priC |
-14.72 |
0.009297 |
1 -- 37 |
32 -- 65 |
primosomal replication protein N'' |
|
______________1____________________________________38\n______________|____________________________________|\n___________5'-______GAACG_____A___CCA___CG_________UAAAC...GUU-3'\n______________GGGGAA_____GGCAA_GCA___GGC__CCAGCAGGA\n______________||::||_____|||||_|||___|||__|||:|||:|\n______________CCUUUU_____CCGUU_CGU___CCG__GGUUGUCUU\n3'-UUU...UACAA______AGUCA_____A___UA_______________UUAUU...UUG-5'\n_____________|_____________________________________|\n_____________66____________________________________31\n |
30 -- 36 |
33 -- 39 |
-34.0772 kcal/mol |
8.3902 kcal/mol |
10.9649 kcal/mol |
1 38@LB@ | |@LB@ 5'- GAACG A CCA CG UAAAC...GUU-3'@LB@ GGGGAA GGCAA GCA GGC CCAGCAGGA@LB@ ||::|| ||||| ||| ||| |||:|||:|@LB@ CCUUUU CCGUU CGU CCG GGUUGUCUU@LB@3'-UUU...UACAA AGUCA A UA UUAUU...UUG-5'@LB@ | |@LB@ 66 31@LB@@LB@@LB@Energy -14.72 kcal/mol@LB@Hybridization Energy -34.0772 kcal/mol@LB@Unfolding Energy - mRNA 8.3902 kcal/mol@LB@Unfolding Energy - sRNA 10.9649 kcal/mol@LB@@LB@Position - mRNA 1 -- 37@LB@Position - sRNA 32 -- 65@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 81 |
0.006985 |
0.2822 |
b0333 |
prpC |
-14.20 |
0.012743 |
251 -- 274 |
6 -- 28 |
2-methylcitrate synthase |
|
_____________250______________________275\n_____________|________________________|\n5'-ACU...CCGAA_____________CUUUCU_____UCCGG...GCA-3'\n______________AAAAUCUGUGGCA______GGCGU\n______________||||||||||:||______|||:|\n______________UUUUAGACACUGU______CCGUA\n3'-UUU...UUUUA_____________UAUUU______UAUUG-5'\n_____________|________________________|\n_____________29_______________________5\n |
257 -- 263 |
16 -- 22 |
-23.1913 kcal/mol |
4.0983 kcal/mol |
4.89176 kcal/mol |
250 275@LB@ | |@LB@5'-ACU...CCGAA CUUUCU UCCGG...GCA-3'@LB@ AAAAUCUGUGGCA GGCGU@LB@ ||||||||||:|| |||:|@LB@ UUUUAGACACUGU CCGUA@LB@3'-UUU...UUUUA UAUUU UAUUG-5'@LB@ | |@LB@ 29 5@LB@@LB@@LB@Energy -14.20 kcal/mol@LB@Hybridization Energy -23.1913 kcal/mol@LB@Unfolding Energy - mRNA 4.0983 kcal/mol@LB@Unfolding Energy - sRNA 4.89176 kcal/mol@LB@@LB@Position - mRNA 251 -- 274@LB@Position - sRNA 6 -- 28@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 76 |
0.006626 |
0.2822 |
b1658 |
purR |
-10.59 |
0.091499 |
175 -- 205 |
41 -- 63 |
transcriptional repressor hypoxanthine-binding |
|
_____________174______________________________206\n_____________|________________________________|\n5'-UUU...GAGCU____________CUGGAGUGA____G______AACAA...GCA-3'\n______________GAAGUUAG_GGU_________AAUG_AAUGGC\n______________:||:|:||_||:_________||||_||||||\n______________UUUUAGUC_CCG_________UUAC_UUACCG\n3'-UUU...CAACC________A________________G______GGUUG...UUG-5'\n_____________|________________________________|\n_____________64_______________________________40\n |
176 -- 182 |
56 -- 62 |
-19.9152 kcal/mol |
5.04846 kcal/mol |
4.27657 kcal/mol |
174 206@LB@ | |@LB@5'-UUU...GAGCU CUGGAGUGA G AACAA...GCA-3'@LB@ GAAGUUAG GGU AAUG AAUGGC@LB@ :||:|:|| ||: |||| ||||||@LB@ UUUUAGUC CCG UUAC UUACCG@LB@3'-UUU...CAACC A G GGUUG...UUG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -19.9152 kcal/mol@LB@Unfolding Energy - mRNA 5.04846 kcal/mol@LB@Unfolding Energy - sRNA 4.27657 kcal/mol@LB@@LB@Position - mRNA 175 -- 205@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 172 |
0.02065 |
0.4033 |
b1015 |
putP |
-10.70 |
0.086688 |
188 -- 205 |
52 -- 67 |
proline:sodium symporter |
|
_____________187________________206\n_____________|__________________|\n5'-AGA...AUUUU_______CU____A____UAUUA...ACG-3'\n______________UUGGAGA__UUAG_UGGC\n______________|||||:|__|:||_||||\n______________AACCUUU__AGUC_ACCG\n3'-UUU...UAUAC_______U__________UUACG...UUG-5'\n_____________|__________________|\n_____________68_________________51\n |
188 -- 194 |
61 -- 67 |
-15.9795 kcal/mol |
2.37428 kcal/mol |
2.90583 kcal/mol |
187 206@LB@ | |@LB@5'-AGA...AUUUU CU A UAUUA...ACG-3'@LB@ UUGGAGA UUAG UGGC@LB@ |||||:| |:|| ||||@LB@ AACCUUU AGUC ACCG@LB@3'-UUU...UAUAC U UUACG...UUG-5'@LB@ | |@LB@ 68 51@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -15.9795 kcal/mol@LB@Unfolding Energy - mRNA 2.37428 kcal/mol@LB@Unfolding Energy - sRNA 2.90583 kcal/mol@LB@@LB@Position - mRNA 188 -- 205@LB@Position - sRNA 52 -- 67@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 33 |
0.002101 |
0.2088 |
b1300 |
puuC |
-8.92 |
0.198515 |
81 -- 101 |
2 -- 20 |
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase |
b0312 |
_____________80____________________102\n_____________|_____________________|\n5'-GGC...CGGCU___AG_______U________AGAAU...AAA-3'\n______________UGA__GAUGAAG_GUAUAUAA\n______________|||__:||:|||_|:||||||\n______________ACU__UUAUUUC_CGUAUAUU\n3'-UUU...UAGAC___G_________________G-5'\n_____________|_____________________|\n_____________21____________________1\n |
94 -- 100 |
3 -- 9 |
-14.4968 kcal/mol |
1.34672 kcal/mol |
4.22649 kcal/mol |
80 102@LB@ | |@LB@5'-GGC...CGGCU AG U AGAAU...AAA-3'@LB@ UGA GAUGAAG GUAUAUAA@LB@ ||| :||:||| |:||||||@LB@ ACU UUAUUUC CGUAUAUU@LB@3'-UUU...UAGAC G G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -8.92 kcal/mol@LB@Hybridization Energy -14.4968 kcal/mol@LB@Unfolding Energy - mRNA 1.34672 kcal/mol@LB@Unfolding Energy - sRNA 4.22649 kcal/mol@LB@@LB@Position - mRNA 81 -- 101@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 187 |
0.02306 |
0.4145 |
b1854 |
pykA |
-9.88 |
0.128920 |
243 -- 268 |
12 -- 43 |
pyruvate kinase II |
|
_____________242______________________________269\n_____________|________________________________|\n5'-GAA...CGUUA_________AC____________C________UCUUG...ACG-3'\n______________GGCCCAGCA_______AGAUC_G_GAUAAUAA\n______________||||||:||_______|:|||_|_||:|||||\n______________CCGGGUUGU_______UUUAG_C_CUGUUAUU\n3'-UUU...CGUUA_________CUUUUAU_____A_A________UCCGU...UUG-5'\n_____________|________________________________|\n_____________44_______________________________11\n |
262 -- 268 |
12 -- 18 |
-24.7448 kcal/mol |
4.16838 kcal/mol |
10.6985 kcal/mol |
242 269@LB@ | |@LB@5'-GAA...CGUUA AC C UCUUG...ACG-3'@LB@ GGCCCAGCA AGAUC G GAUAAUAA@LB@ ||||||:|| |:||| | ||:|||||@LB@ CCGGGUUGU UUUAG C CUGUUAUU@LB@3'-UUU...CGUUA CUUUUAU A A UCCGU...UUG-5'@LB@ | |@LB@ 44 11@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -24.7448 kcal/mol@LB@Unfolding Energy - mRNA 4.16838 kcal/mol@LB@Unfolding Energy - sRNA 10.6985 kcal/mol@LB@@LB@Position - mRNA 243 -- 268@LB@Position - sRNA 12 -- 43@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 72 |
0.005975 |
0.2791 |
b1062 |
pyrC |
-13.01 |
0.025478 |
15 -- 31 |
41 -- 58 |
dihydro-orotase |
|
_____________14_________________32\n_____________|__________________|\n5'-GCG...GCAGC_________A________GAAAA...CCA-3'\n______________CAG_GGCGA_GCAAUGGC\n______________|||_|||:|_||||||||\n______________GUC_CCGUU_CGUUACCG\n3'-UUU...UUUUA___A_____A________GGUUG...UUG-5'\n_____________|__________________|\n_____________59_________________40\n |
25 -- 31 |
41 -- 47 |
-24.8377 kcal/mol |
7.56192 kcal/mol |
4.26806 kcal/mol |
14 32@LB@ | |@LB@5'-GCG...GCAGC A GAAAA...CCA-3'@LB@ CAG GGCGA GCAAUGGC@LB@ ||| |||:| ||||||||@LB@ GUC CCGUU CGUUACCG@LB@3'-UUU...UUUUA A A GGUUG...UUG-5'@LB@ | |@LB@ 59 40@LB@@LB@@LB@Energy -13.01 kcal/mol@LB@Hybridization Energy -24.8377 kcal/mol@LB@Unfolding Energy - mRNA 7.56192 kcal/mol@LB@Unfolding Energy - sRNA 4.26806 kcal/mol@LB@@LB@Position - mRNA 15 -- 31@LB@Position - sRNA 41 -- 58@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 22 |
0.001182 |
0.1807 |
b3642 |
pyrE |
-13.24 |
0.022299 |
74 -- 119 |
8 -- 48 |
orotate phosphoribosyltransferase |
|
_____________73______________________________________________120\n_____________|_______________________________________________|\n5'-CGG...UGUUG__UC________G_____UC______CAU___AGC____CA______GGCGC...AUU-3'\n______________GC__UGGCCCGA_GGGAA___GAAUC___UGU___GACG__GAAGGC\n______________||__||||||:|_:|:||___:||||___|||___|||:__:|||||\n______________CG__ACCGGGUU_UCUUU___UUUAG___ACA___CUGU__UUUCCG\n3'-UUU...CGUUA__UU________G_____UAU__________________UA______UAUAUUG-5'\n_____________|_______________________________________________|\n_____________49______________________________________________7\n |
79 -- 85 |
37 -- 43 |
-37.0606 kcal/mol |
11.836 kcal/mol |
11.9819 kcal/mol |
73 120@LB@ | |@LB@5'-CGG...UGUUG UC G UC CAU AGC CA GGCGC...AUU-3'@LB@ GC UGGCCCGA GGGAA GAAUC UGU GACG GAAGGC@LB@ || ||||||:| :|:|| :|||| ||| |||: :|||||@LB@ CG ACCGGGUU UCUUU UUUAG ACA CUGU UUUCCG@LB@3'-UUU...CGUUA UU G UAU UA UAUAUUG-5'@LB@ | |@LB@ 49 7@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -37.0606 kcal/mol@LB@Unfolding Energy - mRNA 11.836 kcal/mol@LB@Unfolding Energy - sRNA 11.9819 kcal/mol@LB@@LB@Position - mRNA 74 -- 119@LB@Position - sRNA 8 -- 48@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 20 |
0.0008987 |
0.1511 |
b2597 |
raiA |
-11.08 |
0.071670 |
189 -- 211 |
11 -- 33 |
cold shock protein associated with 30S ribosomal subunit |
|
_____________188_____________________212\n_____________|_______________________|\n5'-GCG...GACAA____________A__________CAUUA...AUC-3'\n______________GAGGUAAAAUUU_UGACAAUGAA\n______________:|::||||||:|_|||||||:||\n______________UUUUAUUUUAGA_ACUGUUAUUU\n3'-UUU...UUGUC____________C__________CCGUA...UUG-5'\n_____________|_______________________|\n_____________34______________________10\n |
205 -- 211 |
11 -- 17 |
-19.0558 kcal/mol |
3.03608 kcal/mol |
4.94152 kcal/mol |
188 212@LB@ | |@LB@5'-GCG...GACAA A CAUUA...AUC-3'@LB@ GAGGUAAAAUUU UGACAAUGAA@LB@ :|::||||||:| |||||||:||@LB@ UUUUAUUUUAGA ACUGUUAUUU@LB@3'-UUU...UUGUC C CCGUA...UUG-5'@LB@ | |@LB@ 34 10@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -19.0558 kcal/mol@LB@Unfolding Energy - mRNA 3.03608 kcal/mol@LB@Unfolding Energy - sRNA 4.94152 kcal/mol@LB@@LB@Position - mRNA 189 -- 211@LB@Position - sRNA 11 -- 33@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 11 -- 17@LB@ |
