1 |
0 |
0 |
b2215 |
ompC |
-25.52 |
0.000001 |
134 -- 186 |
1 -- 70 |
outer membrane porin protein C |
|
_____________133____________________________________________________________________187\n_____________|______________________________________________________________________|\n5'-AUC...GAUUA___AG__UU_____________________________________AAGCA___________________AGAGG...AUC-3'\n______________AUG__GG__AAUCAGU____AUGCAGUGGC__________AUAAAA________AAUAAAGGCAUAUAAC\n______________|||__||__|||||||____|||||:||||__________||||||________||||||||||||||||\n______________UAC__CC__UUAGUCA____UACGUUACCG__________UAUUUU________UUAUUUCCGUAUAUUG\n3'-UUU...AAAUA___AA__UU_______CCGU__________GGUUGUCUUU______AGACACUG________________-5'\n_____________|_____________________________________________________________________|\n_____________71____________________________________________________________________1\n |
180 -- 186 |
1 -- 7 |
-48.3995 kcal/mol |
10.7142 kcal/mol |
12.1618 kcal/mol |
133 187@LB@ | |@LB@5'-AUC...GAUUA AG UU AAGCA AGAGG...AUC-3'@LB@ AUG GG AAUCAGU AUGCAGUGGC AUAAAA AAUAAAGGCAUAUAAC@LB@ ||| || ||||||| |||||:|||| |||||| ||||||||||||||||@LB@ UAC CC UUAGUCA UACGUUACCG UAUUUU UUAUUUCCGUAUAUUG@LB@3'-UUU...AAAUA AA UU CCGU GGUUGUCUUU AGACACUG -5'@LB@ | |@LB@ 71 1@LB@@LB@@LB@Energy -25.52 kcal/mol@LB@Hybridization Energy -48.3995 kcal/mol@LB@Unfolding Energy - mRNA 10.7142 kcal/mol@LB@Unfolding Energy - sRNA 12.1618 kcal/mol@LB@@LB@Position - mRNA 134 -- 186@LB@Position - sRNA 1 -- 70@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 1 -- 7@LB@ |
97 |
0.009098 |
0.3118 |
b3221 |
yhcH |
-21.73 |
0.000051 |
38 -- 71 |
30 -- 66 |
DUF386 family protein cupin superfamily |
|
_____________37____________________________________72\n_____________|_____________________________________|\n5'-AUC...GUGCG___U_________________U_______________GUAUC...AAG-3'\n______________UGG__GGUCGGUGGCA__GCG_UGGUCUGGCAGAAGG\n______________|||__::||:||||||__||:_|||:|:::|||||::\n______________ACC__UUAGUCACCGU__CGU_ACCGGGUUGUCUUUU\n3'-UUU...AUACA___UU___________UA___U_______________AUUUU...UUG-5'\n_____________|_____________________________________|\n_____________67____________________________________29\n |
57 -- 63 |
38 -- 44 |
-43.4799 kcal/mol |
10.7586 kcal/mol |
10.9916 kcal/mol |
37 72@LB@ | |@LB@5'-AUC...GUGCG U U GUAUC...AAG-3'@LB@ UGG GGUCGGUGGCA GCG UGGUCUGGCAGAAGG@LB@ ||| ::||:|||||| ||: |||:|:::|||||::@LB@ ACC UUAGUCACCGU CGU ACCGGGUUGUCUUUU@LB@3'-UUU...AUACA UU UA U AUUUU...UUG-5'@LB@ | |@LB@ 67 29@LB@@LB@@LB@Energy -21.73 kcal/mol@LB@Hybridization Energy -43.4799 kcal/mol@LB@Unfolding Energy - mRNA 10.7586 kcal/mol@LB@Unfolding Energy - sRNA 10.9916 kcal/mol@LB@@LB@Position - mRNA 38 -- 71@LB@Position - sRNA 30 -- 66@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 38 -- 44@LB@ |
145 |
0.01667 |
0.3828 |
b1835 |
rsmF |
-17.85 |
0.001164 |
186 -- 211 |
35 -- 58 |
16S rRNA m(5)C1407 methyltransferase SAM-dependent |
|
_____________185________________________212\n_____________|__________________________|\n5'-CGC...UUUGC________C____UC___________CACCG...GUC-3'\n______________CAGUGGUA_AUGC__GUGGCCCAACA\n______________||||||:|_||||__:||||||||||\n______________GUCACCGU_UACG__UACCGGGUUGU\n3'-UUU...UUUUA_____________U____________CUUUU...UUG-5'\n_____________|__________________________|\n_____________59_________________________34\n |
205 -- 211 |
35 -- 41 |
-37.9392 kcal/mol |
9.33395 kcal/mol |
10.7541 kcal/mol |
185 212@LB@ | |@LB@5'-CGC...UUUGC C UC CACCG...GUC-3'@LB@ CAGUGGUA AUGC GUGGCCCAACA@LB@ ||||||:| |||| :||||||||||@LB@ GUCACCGU UACG UACCGGGUUGU@LB@3'-UUU...UUUUA U CUUUU...UUG-5'@LB@ | |@LB@ 59 34@LB@@LB@@LB@Energy -17.85 kcal/mol@LB@Hybridization Energy -37.9392 kcal/mol@LB@Unfolding Energy - mRNA 9.33395 kcal/mol@LB@Unfolding Energy - sRNA 10.7541 kcal/mol@LB@@LB@Position - mRNA 186 -- 211@LB@Position - sRNA 35 -- 58@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 35 -- 41@LB@ |
190 |
0.0237 |
0.4194 |
b0428 |
cyoE |
-16.93 |
0.002220 |
1 -- 26 |
41 -- 65 |
protoheme IX farnesyltransferase |
|
______________1__________________________27\n______________|__________________________|\n___________5'-____C____C________G________ACAGG...GCA-3'\n______________GGAA_AAUC__UGGCAAU_GCAGUGGU\n______________||||_||||__|||||||_|||:|||:\n______________CCUU_UUAG__ACCGUUA_CGUUACCG\n3'-UUU...UACAA_________UC________________GGUUG...UUG-5'\n_____________|___________________________|\n_____________66__________________________40\n |
20 -- 26 |
41 -- 47 |
-29.3415 kcal/mol |
6.59984 kcal/mol |
5.80973 kcal/mol |
1 27@LB@ | |@LB@ 5'- C C G ACAGG...GCA-3'@LB@ GGAA AAUC UGGCAAU GCAGUGGU@LB@ |||| |||| ||||||| |||:|||:@LB@ CCUU UUAG ACCGUUA CGUUACCG@LB@3'-UUU...UACAA UC GGUUG...UUG-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -29.3415 kcal/mol@LB@Unfolding Energy - mRNA 6.59984 kcal/mol@LB@Unfolding Energy - sRNA 5.80973 kcal/mol@LB@@LB@Position - mRNA 1 -- 26@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 41 -- 47@LB@ |
47 |
0.003222 |
0.2306 |
b1667 |
ydhR |
-16.61 |
0.002759 |
245 -- 266 |
34 -- 55 |
putative monooxygenase |
|
_____________244____________________267\n_____________|______________________|\n5'-UUG...CCAUU______C_________G_____CUUAA...AAC-3'\n______________UGGCGA_GCAAUGGCU_AGCAG\n______________||||:|_||||||||:_|:|||\n______________ACCGUU_CGUUACCGG_UUGUC\n3'-UUU...UAGUC______A_________G_____UUUUA...UUG-5'\n_____________|______________________|\n_____________56_____________________33\n |
254 -- 260 |
40 -- 46 |
-33.2096 kcal/mol |
7.64311 kcal/mol |
8.95438 kcal/mol |
244 267@LB@ | |@LB@5'-UUG...CCAUU C G CUUAA...AAC-3'@LB@ UGGCGA GCAAUGGCU AGCAG@LB@ ||||:| ||||||||: |:|||@LB@ ACCGUU CGUUACCGG UUGUC@LB@3'-UUU...UAGUC A G UUUUA...UUG-5'@LB@ | |@LB@ 56 33@LB@@LB@@LB@Energy -16.61 kcal/mol@LB@Hybridization Energy -33.2096 kcal/mol@LB@Unfolding Energy - mRNA 7.64311 kcal/mol@LB@Unfolding Energy - sRNA 8.95438 kcal/mol@LB@@LB@Position - mRNA 245 -- 266@LB@Position - sRNA 34 -- 55@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 40 -- 46@LB@ |
13 |
0.0005138 |
0.1268 |
b0055 |
djlA |
-16.40 |
0.003186 |
213 -- 240 |
39 -- 65 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________212__________________________241\n_____________|____________________________|\n5'-GAC...AUUGG__A_______U_____UG__C_______UACUG...UUG-3'\n______________GG_AAAAUCA_UGGCG__GC_GUGGCCU\n______________||_|||||||_||||:__||_:|||||:\n______________CC_UUUUAGU_ACCGU__CG_UACCGGG\n3'-UUU...UACAA__________C_____UA__U_______UUGUC...UUG-5'\n_____________|____________________________|\n_____________66___________________________38\n |
234 -- 240 |
39 -- 45 |
-30.8595 kcal/mol |
7.7929 kcal/mol |
6.66922 kcal/mol |
212 241@LB@ | |@LB@5'-GAC...AUUGG A U UG C UACUG...UUG-3'@LB@ GG AAAAUCA UGGCG GC GUGGCCU@LB@ || ||||||| ||||: || :|||||:@LB@ CC UUUUAGU ACCGU CG UACCGGG@LB@3'-UUU...UACAA C UA U UUGUC...UUG-5'@LB@ | |@LB@ 66 38@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -30.8595 kcal/mol@LB@Unfolding Energy - mRNA 7.7929 kcal/mol@LB@Unfolding Energy - sRNA 6.66922 kcal/mol@LB@@LB@Position - mRNA 213 -- 240@LB@Position - sRNA 39 -- 65@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 39 -- 45@LB@ |
7 |
0.0002249 |
0.1081 |
b4032 |
malG |
-16.06 |
0.003987 |
187 -- 221 |
31 -- 65 |
maltose transporter subunit |
|
_____________186_________________________________222\n_____________|___________________________________|\n5'-CGU...AUUAA_______AACAAAAAUG_____________C____UCGCA...UGG-3'\n______________GGGAGAU__________GCAAUGGUCCAAC_GAAA\n______________||:|:||__________|||||||:|||||_||||\n______________CCUUUUA__________CGUUACCGGGUUG_CUUU\n3'-UUU...UACAA_______GUCACCGUUA_____________U____UAUUU...UUG-5'\n_____________|___________________________________|\n_____________66__________________________________30\n |
210 -- 216 |
36 -- 42 |
-33.4232 kcal/mol |
6.39587 kcal/mol |
10.9697 kcal/mol |
186 222@LB@ | |@LB@5'-CGU...AUUAA AACAAAAAUG C UCGCA...UGG-3'@LB@ GGGAGAU GCAAUGGUCCAAC GAAA@LB@ ||:|:|| |||||||:||||| ||||@LB@ CCUUUUA CGUUACCGGGUUG CUUU@LB@3'-UUU...UACAA GUCACCGUUA U UAUUU...UUG-5'@LB@ | |@LB@ 66 30@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -33.4232 kcal/mol@LB@Unfolding Energy - mRNA 6.39587 kcal/mol@LB@Unfolding Energy - sRNA 10.9697 kcal/mol@LB@@LB@Position - mRNA 187 -- 221@LB@Position - sRNA 31 -- 65@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 36 -- 42@LB@ |
2 |
3.183e-05 |
0.03921 |
b0889 |
lrp |
-15.78 |
0.004789 |
150 -- 212 |
1 -- 70 |
leucine-responsive global transcriptional regulator |
|
_____________149__________________________________________________________________________213\n_____________|____________________________________________________________________________|\n5'-GUG...CAGUG_____UC________ACA______A_G__A__AAU___________________________UAAU____G_____AAGAA...AGC-3'\n______________AUGUU__AGGGUCAG___GG_AGU_G_GA_GG____ACAGAGA___________GACAAUAA____GGUA_AUAGC\n______________|||||__|:::||||___||_|:|_|_:|_||____|||||:|___________||||||||____||:|_|||:|\n______________UACAA__UUUUAGUC___CC_UUA_C_UU_CC____UGUCUUU___________CUGUUAUU____CCGU_UAUUG\n3'-UUU...AAAUA_____CC________A____G_____G__A__GGGU_______UAUUUUAGACA________U_______A_____-5'\n_____________|___________________________________________________________________________|\n_____________71__________________________________________________________________________1\n |
192 -- 198 |
12 -- 18 |
-35.9997 kcal/mol |
8.06188 kcal/mol |
12.1618 kcal/mol |
149 213@LB@ | |@LB@5'-GUG...CAGUG UC ACA A G A AAU UAAU G AAGAA...AGC-3'@LB@ AUGUU AGGGUCAG GG AGU G GA GG ACAGAGA GACAAUAA GGUA AUAGC@LB@ ||||| |:::|||| || |:| | :| || |||||:| |||||||| ||:| |||:|@LB@ UACAA UUUUAGUC CC UUA C UU CC UGUCUUU CUGUUAUU CCGU UAUUG@LB@3'-UUU...AAAUA CC A G G A GGGU UAUUUUAGACA U A -5'@LB@ | |@LB@ 71 1@LB@@LB@@LB@Energy -15.78 kcal/mol@LB@Hybridization Energy -35.9997 kcal/mol@LB@Unfolding Energy - mRNA 8.06188 kcal/mol@LB@Unfolding Energy - sRNA 12.1618 kcal/mol@LB@@LB@Position - mRNA 150 -- 212@LB@Position - sRNA 1 -- 70@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 12 -- 18@LB@ |
48 |
0.003417 |
0.237 |
b0002 |
thrA |
-15.68 |
0.005086 |
222 -- 242 |
46 -- 65 |
Bifunctional aspartokinase/homoserine dehydrogenase 1 |
|
_____________221___________________243\n_____________|_____________________|\n5'-CCA...UCGGC__UAC___________A____GAACG...UGG-3'\n______________GG___AUCAGUGGCAA_UGCA\n______________||___|||||||||||_||||\n______________CC___UAGUCACCGUU_ACGU\n3'-UUU...UACAA__UUU________________UACCG...UUG-5'\n_____________|_____________________|\n_____________66____________________45\n |
231 -- 237 |
50 -- 56 |
-24.9116 kcal/mol |
5.14883 kcal/mol |
4.07994 kcal/mol |
221 243@LB@ | |@LB@5'-CCA...UCGGC UAC A GAACG...UGG-3'@LB@ GG AUCAGUGGCAA UGCA@LB@ || ||||||||||| ||||@LB@ CC UAGUCACCGUU ACGU@LB@3'-UUU...UACAA UUU UACCG...UUG-5'@LB@ | |@LB@ 66 45@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -24.9116 kcal/mol@LB@Unfolding Energy - mRNA 5.14883 kcal/mol@LB@Unfolding Energy - sRNA 4.07994 kcal/mol@LB@@LB@Position - mRNA 222 -- 242@LB@Position - sRNA 46 -- 65@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 50 -- 56@LB@ |
129 |
0.01395 |
0.3636 |
b2314 |
dedD |
-15.05 |
0.007607 |
192 -- 211 |
45 -- 65 |
membrane-anchored periplasmic protein involved in septation |
|
_____________191___________________212\n_____________|_____________________|\n5'-UUG...CGCGA______G______________GUUUC...AUU-3'\n______________GGAGAA_CGGUGGCAA_GUAA\n______________|||:||_|:|||||||_|:||\n______________CCUUUU_GUCACCGUU_CGUU\n3'-UUU...UACAA______A_________A____ACCGG...UUG-5'\n_____________|_____________________|\n_____________66____________________44\n |
201 -- 207 |
50 -- 56 |
-23.8601 kcal/mol |
4.54883 kcal/mol |
4.26469 kcal/mol |
191 212@LB@ | |@LB@5'-UUG...CGCGA G GUUUC...AUU-3'@LB@ GGAGAA CGGUGGCAA GUAA@LB@ |||:|| |:||||||| |:||@LB@ CCUUUU GUCACCGUU CGUU@LB@3'-UUU...UACAA A A ACCGG...UUG-5'@LB@ | |@LB@ 66 44@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -23.8601 kcal/mol@LB@Unfolding Energy - mRNA 4.54883 kcal/mol@LB@Unfolding Energy - sRNA 4.26469 kcal/mol@LB@@LB@Position - mRNA 192 -- 211@LB@Position - sRNA 45 -- 65@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 50 -- 56@LB@ |