| 190 |
0.0237 |
0.4194 |
b0428 |
cyoE |
-16.93 |
0.002220 |
1 -- 26 |
41 -- 65 |
protoheme IX farnesyltransferase |
|
______________1__________________________27\n______________|__________________________|\n___________5'-____C____C________G________ACAGG...GCA-3'\n______________GGAA_AAUC__UGGCAAU_GCAGUGGU\n______________||||_||||__|||||||_|||:|||:\n______________CCUU_UUAG__ACCGUUA_CGUUACCG\n3'-UUU...UACAA_________UC________________GGUUG...UUG-5'\n_____________|___________________________|\n_____________66__________________________40\n |
20 -- 26 |
41 -- 47 |
-29.3415 kcal/mol |
6.59984 kcal/mol |
5.80973 kcal/mol |
1 27@LB@ | |@LB@ 5'- C C G ACAGG...GCA-3'@LB@ GGAA AAUC UGGCAAU GCAGUGGU@LB@ |||| |||| ||||||| |||:|||:@LB@ CCUU UUAG ACCGUUA CGUUACCG@LB@3'-UUU...UACAA UC GGUUG...UUG-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -29.3415 kcal/mol@LB@Unfolding Energy - mRNA 6.59984 kcal/mol@LB@Unfolding Energy - sRNA 5.80973 kcal/mol@LB@@LB@Position - mRNA 1 -- 26@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 108 |
0.01004 |
0.3126 |
b2422 |
cysA |
-10.23 |
0.108830 |
144 -- 158 |
52 -- 72 |
sulfate/thiosulfate transporter subunit |
|
_____________143___________________159\n_____________|_____________________|\n5'-GGU...AAAAA_____________________GCCUG...UGC-3'\n______________GUAUGUUG______CAGUGGC\n______________:|||||||______|||||||\n______________UAUACAAC______GUCACCG\n3'-UUU...AAAAA________CUUUUA_______UUACG...UUG-5'\n_____________|_____________________|\n_____________73____________________51\n |
152 -- 158 |
52 -- 58 |
-18.4697 kcal/mol |
5.08596 kcal/mol |
3.1495 kcal/mol |
143 159@LB@ | |@LB@5'-GGU...AAAAA GCCUG...UGC-3'@LB@ GUAUGUUG CAGUGGC@LB@ :||||||| |||||||@LB@ UAUACAAC GUCACCG@LB@3'-UUU...AAAAA CUUUUA UUACG...UUG-5'@LB@ | |@LB@ 73 51@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -18.4697 kcal/mol@LB@Unfolding Energy - mRNA 5.08596 kcal/mol@LB@Unfolding Energy - sRNA 3.1495 kcal/mol@LB@@LB@Position - mRNA 144 -- 158@LB@Position - sRNA 52 -- 72@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 134 |
0.01498 |
0.3759 |
b3388 |
damX |
-9.22 |
0.174550 |
186 -- 204 |
42 -- 59 |
cell division protein that binds to the septal ring |
|
_____________185__________________205\n_____________|____________________|\n5'-GGG...ACCUU_____________UA_____AUGAA...AAC-3'\n______________UUAGUGG_GGUGU__AAUGG\n______________|:|||||_::||:__|||||\n______________AGUCACC_UUACG__UUACC\n3'-UUU...CUUUU_______G____________GGGUU...UUG-5'\n_____________|____________________|\n_____________60___________________41\n |
186 -- 192 |
53 -- 59 |
-16.4488 kcal/mol |
3.53707 kcal/mol |
3.69565 kcal/mol |
185 205@LB@ | |@LB@5'-GGG...ACCUU UA AUGAA...AAC-3'@LB@ UUAGUGG GGUGU AAUGG@LB@ |:||||| ::||: |||||@LB@ AGUCACC UUACG UUACC@LB@3'-UUU...CUUUU G GGGUU...UUG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -9.22 kcal/mol@LB@Hybridization Energy -16.4488 kcal/mol@LB@Unfolding Energy - mRNA 3.53707 kcal/mol@LB@Unfolding Energy - sRNA 3.69565 kcal/mol@LB@@LB@Position - mRNA 186 -- 204@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 28 |
0.001683 |
0.2021 |
b0166 |
dapD |
-9.25 |
0.172213 |
119 -- 166 |
9 -- 65 |
2 3 4 5-tetrahydropyridine-2-carboxylate N-succinyltransferase |
|
_____________118___________________________________________________________167\n_____________|_____________________________________________________________|\n5'-UUG...CAGCA_____UGC_____C_______A___A_____UC______________CAA___________GUGAU...AGG-3'\n______________GGAAG___AUCAG_GGU__UG_CAG_GGCCC____________AAUC____ACGAUAAAGG\n______________||||:___|||||_||:__||_||:_|||||____________||||____||:|||||||\n______________CCUUU___UAGUC_CCG__AC_GUU_CCGGG____________UUAG____UGUUAUUUCC\n3'-UUU...UACAA_____________A___UU______A_____UUGUCUUUUAUU____ACAC__________GUAUAUUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________8\n |
160 -- 166 |
9 -- 15 |
-36.4613 kcal/mol |
16.0785 kcal/mol |
11.1365 kcal/mol |
118 167@LB@ | |@LB@5'-UUG...CAGCA UGC C A A UC CAA GUGAU...AGG-3'@LB@ GGAAG AUCAG GGU UG CAG GGCCC AAUC ACGAUAAAGG@LB@ ||||: ||||| ||: || ||: ||||| |||| ||:|||||||@LB@ CCUUU UAGUC CCG AC GUU CCGGG UUAG UGUUAUUUCC@LB@3'-UUU...UACAA A UU A UUGUCUUUUAUU ACAC GUAUAUUG-5'@LB@ | |@LB@ 66 8@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -36.4613 kcal/mol@LB@Unfolding Energy - mRNA 16.0785 kcal/mol@LB@Unfolding Energy - sRNA 11.1365 kcal/mol@LB@@LB@Position - mRNA 119 -- 166@LB@Position - sRNA 9 -- 65@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 36 |
0.002273 |
0.2088 |
b4138 |
dcuA |
-11.14 |
0.069498 |
259 -- 284 |
41 -- 65 |
C4-dicarboxylate antiporter |
|
_____________258__________________________285\n_____________|____________________________|\n5'-AAC...AUUGG_______A___AUU___UU_________GGAUU...UGG-3'\n______________GGGGAAU_GGU___GGU__UGCA__GGC\n______________||::|||_:||___||:__||||__|||\n______________CCUUUUA_UCA___CCG__ACGU__CCG\n3'-UUU...UACAA_______G_________UU____UA___GGUUG...UUG-5'\n_____________|____________________________|\n_____________66___________________________40\n |
259 -- 265 |
59 -- 65 |
-20.3442 kcal/mol |
3.39574 kcal/mol |
5.80973 kcal/mol |
258 285@LB@ | |@LB@5'-AAC...AUUGG A AUU UU GGAUU...UGG-3'@LB@ GGGGAAU GGU GGU UGCA GGC@LB@ ||::||| :|| ||: |||| |||@LB@ CCUUUUA UCA CCG ACGU CCG@LB@3'-UUU...UACAA G UU UA GGUUG...UUG-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -20.3442 kcal/mol@LB@Unfolding Energy - mRNA 3.39574 kcal/mol@LB@Unfolding Energy - sRNA 5.80973 kcal/mol@LB@@LB@Position - mRNA 259 -- 284@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 129 |
0.01395 |
0.3636 |
b2314 |
dedD |
-15.05 |
0.007607 |
192 -- 211 |
45 -- 65 |
membrane-anchored periplasmic protein involved in septation |
|
_____________191___________________212\n_____________|_____________________|\n5'-UUG...CGCGA______G______________GUUUC...AUU-3'\n______________GGAGAA_CGGUGGCAA_GUAA\n______________|||:||_|:|||||||_|:||\n______________CCUUUU_GUCACCGUU_CGUU\n3'-UUU...UACAA______A_________A____ACCGG...UUG-5'\n_____________|_____________________|\n_____________66____________________44\n |
201 -- 207 |
50 -- 56 |
-23.8601 kcal/mol |
4.54883 kcal/mol |
4.26469 kcal/mol |
191 212@LB@ | |@LB@5'-UUG...CGCGA G GUUUC...AUU-3'@LB@ GGAGAA CGGUGGCAA GUAA@LB@ |||:|| |:||||||| |:||@LB@ CCUUUU GUCACCGUU CGUU@LB@3'-UUU...UACAA A A ACCGG...UUG-5'@LB@ | |@LB@ 66 44@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -23.8601 kcal/mol@LB@Unfolding Energy - mRNA 4.54883 kcal/mol@LB@Unfolding Energy - sRNA 4.26469 kcal/mol@LB@@LB@Position - mRNA 192 -- 211@LB@Position - sRNA 45 -- 65@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 105 |
0.009758 |
0.3118 |
b4478 |
dgoD |
-14.76 |
0.009064 |
185 -- 203 |
43 -- 60 |
D-galactonate dehydratase |
|
_____________184_________________204\n_____________|___________________|\n5'-AAA...GGCGU___G__A____________AAAAU...UGA-3'\n______________AUC_AG_GGCAGUGCAAUG\n______________|||_||_||||:|||||||\n______________UAG_UC_CCGUUACGUUAC\n3'-UUU...CCUUU______A____________CGGGU...UUG-5'\n_____________|___________________|\n_____________61__________________42\n |
197 -- 203 |
43 -- 49 |
-22.2033 kcal/mol |
3.91427 kcal/mol |
3.52557 kcal/mol |
184 204@LB@ | |@LB@5'-AAA...GGCGU G A AAAAU...UGA-3'@LB@ AUC AG GGCAGUGCAAUG@LB@ ||| || ||||:|||||||@LB@ UAG UC CCGUUACGUUAC@LB@3'-UUU...CCUUU A CGGGU...UUG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -14.76 kcal/mol@LB@Hybridization Energy -22.2033 kcal/mol@LB@Unfolding Energy - mRNA 3.91427 kcal/mol@LB@Unfolding Energy - sRNA 3.52557 kcal/mol@LB@@LB@Position - mRNA 185 -- 203@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 157 |
0.01802 |
0.3828 |
b3693 |
dgoK |
-7.47 |
0.356536 |
125 -- 141 |
46 -- 60 |
2-oxo-3-deoxygalactonate kinase |
|
_____________124_______________142\n_____________|_________________|\n5'-CAG...ACGAC_____GAC_________GCAGA...CAG-3'\n______________AUCAG___GGCGAUGCG\n______________|||||___|||:||||:\n______________UAGUC___CCGUUACGU\n3'-UUU...CCUUU_____A___________UACCG...UUG-5'\n_____________|_________________|\n_____________61________________45\n |
134 -- 140 |
47 -- 53 |
-18.5317 kcal/mol |
7.63037 kcal/mol |
3.43341 kcal/mol |
124 142@LB@ | |@LB@5'-CAG...ACGAC GAC GCAGA...CAG-3'@LB@ AUCAG GGCGAUGCG@LB@ ||||| |||:||||:@LB@ UAGUC CCGUUACGU@LB@3'-UUU...CCUUU A UACCG...UUG-5'@LB@ | |@LB@ 61 45@LB@@LB@@LB@Energy -7.47 kcal/mol@LB@Hybridization Energy -18.5317 kcal/mol@LB@Unfolding Energy - mRNA 7.63037 kcal/mol@LB@Unfolding Energy - sRNA 3.43341 kcal/mol@LB@@LB@Position - mRNA 125 -- 141@LB@Position - sRNA 46 -- 60@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 13 |
0.0005138 |
0.1268 |
b0055 |
djlA |
-16.40 |
0.003186 |
213 -- 240 |
39 -- 65 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________212__________________________241\n_____________|____________________________|\n5'-GAC...AUUGG__A_______U_____UG__C_______UACUG...UUG-3'\n______________GG_AAAAUCA_UGGCG__GC_GUGGCCU\n______________||_|||||||_||||:__||_:|||||:\n______________CC_UUUUAGU_ACCGU__CG_UACCGGG\n3'-UUU...UACAA__________C_____UA__U_______UUGUC...UUG-5'\n_____________|____________________________|\n_____________66___________________________38\n |
234 -- 240 |
39 -- 45 |
-30.8595 kcal/mol |
7.7929 kcal/mol |
6.66922 kcal/mol |
212 241@LB@ | |@LB@5'-GAC...AUUGG A U UG C UACUG...UUG-3'@LB@ GG AAAAUCA UGGCG GC GUGGCCU@LB@ || ||||||| ||||: || :|||||:@LB@ CC UUUUAGU ACCGU CG UACCGGG@LB@3'-UUU...UACAA C UA U UUGUC...UUG-5'@LB@ | |@LB@ 66 38@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -30.8595 kcal/mol@LB@Unfolding Energy - mRNA 7.7929 kcal/mol@LB@Unfolding Energy - sRNA 6.66922 kcal/mol@LB@@LB@Position - mRNA 213 -- 240@LB@Position - sRNA 39 -- 65@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 46 |
0.003168 |
0.2306 |
b3066 |
dnaG |
-7.10 |
0.407270 |
188 -- 205 |
41 -- 63 |
DNA primase |
|
_____________187_____________________206\n_____________|_______________________|\n5'-ACC...UGCUA____________CU_________UGGAC...GCA-3'\n______________AAAAUCGG_GGC______AUGGC\n______________||||||:|_|||______|||||\n______________UUUUAGUC_CCG______UACCG\n3'-UUU...CAACC________A___UUACGU_____GGUUG...UUG-5'\n_____________|_______________________|\n_____________64______________________40\n |
189 -- 195 |
56 -- 62 |
-16.4791 kcal/mol |
5.10709 kcal/mol |
4.27657 kcal/mol |
187 206@LB@ | |@LB@5'-ACC...UGCUA CU UGGAC...GCA-3'@LB@ AAAAUCGG GGC AUGGC@LB@ ||||||:| ||| |||||@LB@ UUUUAGUC CCG UACCG@LB@3'-UUU...CAACC A UUACGU GGUUG...UUG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -7.10 kcal/mol@LB@Hybridization Energy -16.4791 kcal/mol@LB@Unfolding Energy - mRNA 5.10709 kcal/mol@LB@Unfolding Energy - sRNA 4.27657 kcal/mol@LB@@LB@Position - mRNA 188 -- 205@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 56 -- 62@LB@ |
