| 34 |
0.002116 |
0.2088 |
b0081 |
mraZ |
-11.86 |
0.047767 |
154 -- 189 |
9 -- 59 |
RsmH methytransferase inhibitor |
|
_____________153___________________________________________________190\n_____________|_____________________________________________________|\n5'-GAU...UCCUU_______G__AU_________AA_____________________G________GUGAG...AAA-3'\n______________UCAGUGG_AA__UGUGG_GGC__A________________GUGG_AAUAAGGG\n______________|||||||_||__||:::_|||__|________________|||:_|||||:||\n______________AGUCACC_UU__ACGUU_CCG__U________________CACU_UUAUUUCC\n3'-UUU...CUUUU_______G_________A___GG_UGUCUUUUAUUUUAGA____G________GUAUAUUG-5'\n_____________|_____________________________________________________|\n_____________60____________________________________________________8\n |
183 -- 189 |
9 -- 15 |
-29.7093 kcal/mol |
6.7157 kcal/mol |
11.1344 kcal/mol |
153 190@LB@ | |@LB@5'-GAU...UCCUU G AU AA G GUGAG...AAA-3'@LB@ UCAGUGG AA UGUGG GGC A GUGG AAUAAGGG@LB@ ||||||| || ||::: ||| | |||: |||||:||@LB@ AGUCACC UU ACGUU CCG U CACU UUAUUUCC@LB@3'-UUU...CUUUU G A GG UGUCUUUUAUUUUAGA G GUAUAUUG-5'@LB@ | |@LB@ 60 8@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -29.7093 kcal/mol@LB@Unfolding Energy - mRNA 6.7157 kcal/mol@LB@Unfolding Energy - sRNA 11.1344 kcal/mol@LB@@LB@Position - mRNA 154 -- 189@LB@Position - sRNA 9 -- 59@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 118 |
0.01176 |
0.3326 |
b3601 |
mtlR |
-9.20 |
0.175568 |
190 -- 199 |
44 -- 53 |
mannitol operon repressor |
|
_____________189________200\n_____________|__________|\n5'-UAU...AUAAA__________AAUGG...UUG-3'\n______________GCAAUGCAAU\n______________||||||||||\n______________CGUUACGUUA\n3'-UUU...GUCAC__________CCGGG...UUG-5'\n_____________|__________|\n_____________54_________43\n |
193 -- 199 |
44 -- 50 |
-14.2394 kcal/mol |
1.82821 kcal/mol |
3.20822 kcal/mol |
189 200@LB@ | |@LB@5'-UAU...AUAAA AAUGG...UUG-3'@LB@ GCAAUGCAAU@LB@ ||||||||||@LB@ CGUUACGUUA@LB@3'-UUU...GUCAC CCGGG...UUG-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -14.2394 kcal/mol@LB@Unfolding Energy - mRNA 1.82821 kcal/mol@LB@Unfolding Energy - sRNA 3.20822 kcal/mol@LB@@LB@Position - mRNA 190 -- 199@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 158 |
0.01805 |
0.3828 |
b0159 |
mtn |
-12.15 |
0.040782 |
203 -- 232 |
30 -- 64 |
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase |
|
_____________202_________________________________233\n_____________|___________________________________|\n5'-GAU...UCUAU______________U____U____G__________AGAAG...UCU-3'\n______________GAAAAUC___GGCA___CA_UGGU_CAAUGGAAGA\n______________|||||||___||||___||_|||:_|||::|||:|\n______________CUUUUAG___CCGU___GU_ACCG_GUUGUCUUUU\n3'-UUU...ACAAC_______UCA____UAC__U____G__________AUUUU...UUG-5'\n_____________|___________________________________|\n_____________65__________________________________29\n |
203 -- 209 |
58 -- 64 |
-29.7028 kcal/mol |
6.58654 kcal/mol |
10.9617 kcal/mol |
202 233@LB@ | |@LB@5'-GAU...UCUAU U U G AGAAG...UCU-3'@LB@ GAAAAUC GGCA CA UGGU CAAUGGAAGA@LB@ ||||||| |||| || |||: |||::|||:|@LB@ CUUUUAG CCGU GU ACCG GUUGUCUUUU@LB@3'-UUU...ACAAC UCA UAC U G AUUUU...UUG-5'@LB@ | |@LB@ 65 29@LB@@LB@@LB@Energy -12.15 kcal/mol@LB@Hybridization Energy -29.7028 kcal/mol@LB@Unfolding Energy - mRNA 6.58654 kcal/mol@LB@Unfolding Energy - sRNA 10.9617 kcal/mol@LB@@LB@Position - mRNA 203 -- 232@LB@Position - sRNA 30 -- 64@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 27 |
0.001616 |
0.2012 |
b0085 |
murE |
-13.53 |
0.018874 |
165 -- 198 |
1 -- 33 |
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase |
|
_____________164_________________________________199\n_____________|___________________________________|\n5'-UGC...CGAUA_________________U___C______AGGG___AGGUG...CGG-3'\n______________AAAAU_GAAUUUGUGAU_AAU_AAGGCG____GAC\n______________|||||_:|||:|||||:_|||_|||||:____:||\n______________UUUUA_UUUAGACACUG_UUA_UUCCGU____UUG\n3'-UUU...UUGUC_____U_______________U______AUA____-5'\n_____________|__________________________________|\n_____________34_________________________________1\n |
174 -- 180 |
17 -- 23 |
-22.2929 kcal/mol |
3.71145 kcal/mol |
5.04823 kcal/mol |
164 199@LB@ | |@LB@5'-UGC...CGAUA U C AGGG AGGUG...CGG-3'@LB@ AAAAU GAAUUUGUGAU AAU AAGGCG GAC@LB@ ||||| :|||:|||||: ||| |||||: :||@LB@ UUUUA UUUAGACACUG UUA UUCCGU UUG@LB@3'-UUU...UUGUC U U AUA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -22.2929 kcal/mol@LB@Unfolding Energy - mRNA 3.71145 kcal/mol@LB@Unfolding Energy - sRNA 5.04823 kcal/mol@LB@@LB@Position - mRNA 165 -- 198@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 117 |
0.01164 |
0.3326 |
b1119 |
nagK |
-13.64 |
0.017780 |
246 -- 275 |
42 -- 70 |
N-acetyl-D-glucosamine kinase |
|
_____________245_____________________________276\n_____________|_______________________________|\n5'-UCA...UUGGC_____U__UAG_____C_____U________GAAAA...GUG-3'\n______________GUGUU_GA____CGGU_GGCAG_UGCAGUGG\n______________:||||_||____|:||_||||:_||||:|||\n______________UACAA_CU____GUCA_CCGUU_ACGUUACC\n3'-UUU...AAAUA_____C__UUUA___________________GGGUU...UUG-5'\n_____________|_______________________________|\n_____________71______________________________41\n |
269 -- 275 |
42 -- 48 |
-28.344 kcal/mol |
8.3584 kcal/mol |
6.34928 kcal/mol |
245 276@LB@ | |@LB@5'-UCA...UUGGC U UAG C U GAAAA...GUG-3'@LB@ GUGUU GA CGGU GGCAG UGCAGUGG@LB@ :|||| || |:|| ||||: ||||:|||@LB@ UACAA CU GUCA CCGUU ACGUUACC@LB@3'-UUU...AAAUA C UUUA GGGUU...UUG-5'@LB@ | |@LB@ 71 41@LB@@LB@@LB@Energy -13.64 kcal/mol@LB@Hybridization Energy -28.344 kcal/mol@LB@Unfolding Energy - mRNA 8.3584 kcal/mol@LB@Unfolding Energy - sRNA 6.34928 kcal/mol@LB@@LB@Position - mRNA 246 -- 275@LB@Position - sRNA 42 -- 70@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 135 |
0.01531 |
0.3774 |
b3224 |
nanT |
-10.34 |
0.103537 |
56 -- 77 |
28 -- 54 |
sialic acid transporter |
|
_____________55__________________________78\n_____________|___________________________|\n5'-CGC...CUGAA_____________________UU____CAAGA...GUU-3'\n______________GGC___GC__UGGCCCAGCAG__GAUG\n______________|||___||__|||||||:|||__:||:\n______________CCG___CG__ACCGGGUUGUC__UUAU\n3'-UUU...AGUCA___UUA__UU___________UU____UUUAG...UUG-5'\n_____________|___________________________|\n_____________55__________________________27\n |
63 -- 69 |
36 -- 42 |
-28.0045 kcal/mol |
8.68418 kcal/mol |
8.98285 kcal/mol |
55 78@LB@ | |@LB@5'-CGC...CUGAA UU CAAGA...GUU-3'@LB@ GGC GC UGGCCCAGCAG GAUG@LB@ ||| || |||||||:||| :||:@LB@ CCG CG ACCGGGUUGUC UUAU@LB@3'-UUU...AGUCA UUA UU UU UUUAG...UUG-5'@LB@ | |@LB@ 55 27@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -28.0045 kcal/mol@LB@Unfolding Energy - mRNA 8.68418 kcal/mol@LB@Unfolding Energy - sRNA 8.98285 kcal/mol@LB@@LB@Position - mRNA 56 -- 77@LB@Position - sRNA 28 -- 54@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 114 |
0.01136 |
0.3326 |
b2203 |
napB |
-12.98 |
0.025868 |
242 -- 255 |
39 -- 54 |
nitrate reductase small cytochrome C550 subunit periplasmic |
|
_____________241______________256\n_____________|________________|\n5'-ACC...UGGAC________________UGGUG...UUA-3'\n______________GGCGAUGC__UGGCCC\n______________|||:||||__||||||\n______________CCGUUACG__ACCGGG\n3'-UUU...AGUCA________UU______UUGUC...UUG-5'\n_____________|________________|\n_____________55_______________38\n |
243 -- 249 |
47 -- 53 |
-25.1467 kcal/mol |
7.40583 kcal/mol |
4.76022 kcal/mol |
241 256@LB@ | |@LB@5'-ACC...UGGAC UGGUG...UUA-3'@LB@ GGCGAUGC UGGCCC@LB@ |||:|||| ||||||@LB@ CCGUUACG ACCGGG@LB@3'-UUU...AGUCA UU UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -12.98 kcal/mol@LB@Hybridization Energy -25.1467 kcal/mol@LB@Unfolding Energy - mRNA 7.40583 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 242 -- 255@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 178 |
0.02184 |
0.4127 |
b1466 |
narW |
-11.23 |
0.066200 |
254 -- 267 |
42 -- 56 |
nitrate reductase 2 (NRZ) delta subunit (assembly subunit) |
|
_____________253_____________268\n_____________|_______________|\n5'-AUU...CUGUU____G__________AGGAC...CGC-3'\n______________GUGG_AAUGCAA_GG\n______________||||_|||||||_||\n______________CACC_UUACGUU_CC\n3'-UUU...UUAGU____G_______A__GGGUU...UUG-5'\n_____________|_______________|\n_____________57______________41\n |
259 -- 265 |
45 -- 51 |
-17.8423 kcal/mol |
3.07693 kcal/mol |
3.53153 kcal/mol |
253 268@LB@ | |@LB@5'-AUU...CUGUU G AGGAC...CGC-3'@LB@ GUGG AAUGCAA GG@LB@ |||| ||||||| ||@LB@ CACC UUACGUU CC@LB@3'-UUU...UUAGU G A GGGUU...UUG-5'@LB@ | |@LB@ 57 41@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -17.8423 kcal/mol@LB@Unfolding Energy - mRNA 3.07693 kcal/mol@LB@Unfolding Energy - sRNA 3.53153 kcal/mol@LB@@LB@Position - mRNA 254 -- 267@LB@Position - sRNA 42 -- 56@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 43 |
0.002722 |
0.2088 |
b0192 |
nlpE |
-8.83 |
0.206883 |
4 -- 33 |
38 -- 65 |
lipoprotein involved with copper homeostasis and adhesion |
|
_____________3_______________________________34\n_____________|_______________________________|\n________5'-UCA____CUGAACC_____A____CUC_______GCUGG...CGC-3'\n______________GGAA________GCGA_GCAG___UGGCCCG\n______________||||________||:|_|||:___||||||:\n______________CCUU________CGUU_CGUU___ACCGGGU\n3'-UUU...UACAA____UUAGUCAC____A______________UGUCU...UUG-5'\n_____________|_______________________________|\n_____________66______________________________37\n |
27 -- 33 |
38 -- 44 |
-23.0011 kcal/mol |
7.49976 kcal/mol |
6.67322 kcal/mol |
3 34@LB@ | |@LB@ 5'-UCA CUGAACC A CUC GCUGG...CGC-3'@LB@ GGAA GCGA GCAG UGGCCCG@LB@ |||| ||:| |||: ||||||:@LB@ CCUU CGUU CGUU ACCGGGU@LB@3'-UUU...UACAA UUAGUCAC A UGUCU...UUG-5'@LB@ | |@LB@ 66 37@LB@@LB@@LB@Energy -8.83 kcal/mol@LB@Hybridization Energy -23.0011 kcal/mol@LB@Unfolding Energy - mRNA 7.49976 kcal/mol@LB@Unfolding Energy - sRNA 6.67322 kcal/mol@LB@@LB@Position - mRNA 4 -- 33@LB@Position - sRNA 38 -- 65@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 162 |
0.01861 |
0.3864 |
b2280 |
nuoJ |
-11.65 |
0.053319 |
100 -- 143 |
1 -- 58 |
NADH:ubiquinone oxidoreductase membrane subunit J |
|
_____________99____________________________________________________________144\n_____________|_____________________________________________________________|\n5'-GAU...UCUAC___A_______________AA_______C__________________________A_____AGAGA...UUA-3'\n______________CGG_UGGCAG_GU_AUGGC__UCGACGG_AAA_____________GAUAAGGGCG___AGC\n______________|:|_|||||:_|:_|||||__:|:||:|_|||_____________:||||:|||:___|:|\n______________GUC_ACCGUU_CG_UACCG__GGUUGUC_UUU_____________UUAUUUCCGU___UUG\n3'-UUU...UUUUA__________A__U______________U___AUUUUAGACACUG__________AUA___-5'\n_____________|____________________________________________________________|\n_____________59___________________________________________________________1\n |
133 -- 139 |
7 -- 13 |
-36.1441 kcal/mol |
12.3456 kcal/mol |
12.1476 kcal/mol |
99 144@LB@ | |@LB@5'-GAU...UCUAC A AA C A AGAGA...UUA-3'@LB@ CGG UGGCAG GU AUGGC UCGACGG AAA GAUAAGGGCG AGC@LB@ |:| |||||: |: ||||| :|:||:| ||| :||||:|||: |:|@LB@ GUC ACCGUU CG UACCG GGUUGUC UUU UUAUUUCCGU UUG@LB@3'-UUU...UUUUA A U U AUUUUAGACACUG AUA -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -11.65 kcal/mol@LB@Hybridization Energy -36.1441 kcal/mol@LB@Unfolding Energy - mRNA 12.3456 kcal/mol@LB@Unfolding Energy - sRNA 12.1476 kcal/mol@LB@@LB@Position - mRNA 100 -- 143@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 7 -- 13@LB@ |
