| 120 |
0.01191 |
0.3337 |
b0354 |
yaiL |
-10.86 |
0.080118 |
189 -- 207 |
50 -- 67 |
DUF2058 family protein |
|
_____________188_________________208\n_____________|___________________|\n5'-GUA...CGGGU_______CAA__A______AACUU...UUC-3'\n______________UUGGAAA___AG_UGGCAA\n______________|||||||___||_||||||\n______________AACCUUU___UC_ACCGUU\n3'-UUU...UAUAC_______UAG_________ACGUU...UUG-5'\n_____________|___________________|\n_____________68__________________49\n |
189 -- 195 |
61 -- 67 |
-16.0374 kcal/mol |
2.05851 kcal/mol |
3.12147 kcal/mol |
188 208@LB@ | |@LB@5'-GUA...CGGGU CAA A AACUU...UUC-3'@LB@ UUGGAAA AG UGGCAA@LB@ ||||||| || ||||||@LB@ AACCUUU UC ACCGUU@LB@3'-UUU...UAUAC UAG ACGUU...UUG-5'@LB@ | |@LB@ 68 49@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -16.0374 kcal/mol@LB@Unfolding Energy - mRNA 2.05851 kcal/mol@LB@Unfolding Energy - sRNA 3.12147 kcal/mol@LB@@LB@Position - mRNA 189 -- 207@LB@Position - sRNA 50 -- 67@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 151 |
0.01786 |
0.3828 |
b0412 |
yajI |
-11.20 |
0.067280 |
41 -- 55 |
41 -- 54 |
putative lipoprotein |
|
_____________40______________56\n_____________|_______________|\n5'-CGA...GAAUG_________UAC___GUCCU...UCA-3'\n______________GGCAAUGCA___GGC\n______________|||||||||___|||\n______________CCGUUACGU___CCG\n3'-UUU...AGUCA_________UA____GGUUG...UUG-5'\n_____________|_______________|\n_____________55______________40\n |
43 -- 49 |
46 -- 52 |
-19.8433 kcal/mol |
4.75092 kcal/mol |
3.89026 kcal/mol |
40 56@LB@ | |@LB@5'-CGA...GAAUG UAC GUCCU...UCA-3'@LB@ GGCAAUGCA GGC@LB@ ||||||||| |||@LB@ CCGUUACGU CCG@LB@3'-UUU...AGUCA UA GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -19.8433 kcal/mol@LB@Unfolding Energy - mRNA 4.75092 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 41 -- 55@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 56 |
0.003989 |
0.237 |
b0453 |
ybaY |
-12.27 |
0.038324 |
59 -- 73 |
39 -- 55 |
outer membrane lipoprotein |
|
_____________58________________74\n_____________|_________________|\n5'-AAG...UCCGA_________________GAAUU...CAA-3'\n______________UGG__GUGCAAUGGUCU\n______________|||__:||||||||:|:\n______________ACC__UACGUUACCGGG\n3'-UUU...UAGUC___GU____________UUGUC...UUG-5'\n_____________|_________________|\n_____________56________________38\n |
67 -- 73 |
39 -- 45 |
-20.8095 kcal/mol |
3.77686 kcal/mol |
4.76312 kcal/mol |
58 74@LB@ | |@LB@5'-AAG...UCCGA GAAUU...CAA-3'@LB@ UGG GUGCAAUGGUCU@LB@ ||| :||||||||:|:@LB@ ACC UACGUUACCGGG@LB@3'-UUU...UAGUC GU UUGUC...UUG-5'@LB@ | |@LB@ 56 38@LB@@LB@@LB@Energy -12.27 kcal/mol@LB@Hybridization Energy -20.8095 kcal/mol@LB@Unfolding Energy - mRNA 3.77686 kcal/mol@LB@Unfolding Energy - sRNA 4.76312 kcal/mol@LB@@LB@Position - mRNA 59 -- 73@LB@Position - sRNA 39 -- 55@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 165 |
0.01953 |
0.3981 |
b0603 |
ybdO |
-12.89 |
0.027143 |
166 -- 206 |
40 -- 73 |
putative DNA-binding transcriptional regulator |
|
_____________165_________________________________________207\n_____________|___________________________________________|\n5'-UCA...GUGAA_____CA_______AAAAUAUAAC___A_______________AAUCU...CAC-3'\n______________UAUAU__UGGAAGA__________CGG__GUAGUGUA_UGGCC\n______________|||||__|||||:|__________|:|__|:|:||:|_|||||\n______________AUAUA__ACCUUUU__________GUC__CGUUACGU_ACCGG\n3'-UUU...GAAAA_____CA_______A____________AC________U_____GUUGU...UUG-5'\n_____________|___________________________________________|\n_____________74__________________________________________39\n |
195 -- 201 |
46 -- 52 |
-24.6879 kcal/mol |
4.92423 kcal/mol |
6.86861 kcal/mol |
165 207@LB@ | |@LB@5'-UCA...GUGAA CA AAAAUAUAAC A AAUCU...CAC-3'@LB@ UAUAU UGGAAGA CGG GUAGUGUA UGGCC@LB@ ||||| |||||:| |:| |:|:||:| |||||@LB@ AUAUA ACCUUUU GUC CGUUACGU ACCGG@LB@3'-UUU...GAAAA CA A AC U GUUGU...UUG-5'@LB@ | |@LB@ 74 39@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -24.6879 kcal/mol@LB@Unfolding Energy - mRNA 4.92423 kcal/mol@LB@Unfolding Energy - sRNA 6.86861 kcal/mol@LB@@LB@Position - mRNA 166 -- 206@LB@Position - sRNA 40 -- 73@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 19 |
0.0008126 |
0.1438 |
b1205 |
ychH |
-14.60 |
0.010030 |
245 -- 269 |
40 -- 68 |
DUF2583 family putative inner membrane protein |
|
_____________244____________________________270\n_____________|______________________________|\n5'-CAA...AUGGG___________U__________________GGCGU...UAC-3'\n______________GUUGG___GUC_GGUGGUAAUG__GUGGUC\n______________|||||___:||_:||||:||||__:|||:|\n______________CAACC___UAG_UCACCGUUAC__UACCGG\n3'-UUU...AUAUA_____UUU______________GU______GUUGU...UUG-5'\n_____________|______________________________|\n_____________69_____________________________39\n |
257 -- 263 |
48 -- 54 |
-27.4871 kcal/mol |
6.07036 kcal/mol |
6.81885 kcal/mol |
244 270@LB@ | |@LB@5'-CAA...AUGGG U GGCGU...UAC-3'@LB@ GUUGG GUC GGUGGUAAUG GUGGUC@LB@ ||||| :|| :||||:|||| :|||:|@LB@ CAACC UAG UCACCGUUAC UACCGG@LB@3'-UUU...AUAUA UUU GU GUUGU...UUG-5'@LB@ | |@LB@ 69 39@LB@@LB@@LB@Energy -14.60 kcal/mol@LB@Hybridization Energy -27.4871 kcal/mol@LB@Unfolding Energy - mRNA 6.07036 kcal/mol@LB@Unfolding Energy - sRNA 6.81885 kcal/mol@LB@@LB@Position - mRNA 245 -- 269@LB@Position - sRNA 40 -- 68@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 128 |
0.01375 |
0.3614 |
b1271 |
yciK |
-9.18 |
0.177475 |
2 -- 35 |
4 -- 52 |
putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase |
|
_____________1_________________________________________________36\n_____________|_________________________________________________|\n__________5'-A___C__UU___________UUU________________C__________UAAGC...CAC-3'\n______________CAA_GC__UGGCUC_ACAG_______________ACAA___AGGCAUGU\n______________|||_||__||||:|_||||_______________||||___||||||:|\n______________GUU_CG__ACCGGG_UGUC_______________UGUU___UCCGUAUA\n3'-UUU...UCACC___A__UU______U____UUUUAUUUUAGACAC____AUU________UUG-5'\n_____________|_________________________________________________|\n_____________53________________________________________________3\n |
29 -- 35 |
4 -- 10 |
-28.8633 kcal/mol |
7.6461 kcal/mol |
12.0385 kcal/mol |
1 36@LB@ | |@LB@ 5'-A C UU UUU C UAAGC...CAC-3'@LB@ CAA GC UGGCUC ACAG ACAA AGGCAUGU@LB@ ||| || ||||:| |||| |||| ||||||:|@LB@ GUU CG ACCGGG UGUC UGUU UCCGUAUA@LB@3'-UUU...UCACC A UU U UUUUAUUUUAGACAC AUU UUG-5'@LB@ | |@LB@ 53 3@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -28.8633 kcal/mol@LB@Unfolding Energy - mRNA 7.6461 kcal/mol@LB@Unfolding Energy - sRNA 12.0385 kcal/mol@LB@@LB@Position - mRNA 2 -- 35@LB@Position - sRNA 4 -- 52@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 24 |
0.001299 |
0.182 |
b1267 |
yciO |
-12.11 |
0.041783 |
4 -- 24 |
36 -- 58 |
putative RNA binding protein |
|
_____________3_______________________25\n_____________|_______________________|\n________5'-GCG_____C_________C_______GAACG...CAA-3'\n______________CAGUG_CA__GCAAU_GCCCAAU\n______________|||||_||__|||||_||||||:\n______________GUCAC_GU__CGUUA_CGGGUUG\n3'-UUU...UUUUA_____C__UA_____C_______UCUUU...UUG-5'\n_____________|_______________________|\n_____________59______________________35\n |
18 -- 24 |
36 -- 42 |
-24.2706 kcal/mol |
1.86377 kcal/mol |
10.2972 kcal/mol |
3 25@LB@ | |@LB@ 5'-GCG C C GAACG...CAA-3'@LB@ CAGUG CA GCAAU GCCCAAU@LB@ ||||| || ||||| ||||||:@LB@ GUCAC GU CGUUA CGGGUUG@LB@3'-UUU...UUUUA C UA C UCUUU...UUG-5'@LB@ | |@LB@ 59 35@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -24.2706 kcal/mol@LB@Unfolding Energy - mRNA 1.86377 kcal/mol@LB@Unfolding Energy - sRNA 10.2972 kcal/mol@LB@@LB@Position - mRNA 4 -- 24@LB@Position - sRNA 36 -- 58@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 18 |
0.0007704 |
0.1438 |
b4526 |
ydaE |
-7.35 |
0.372707 |
186 -- 222 |
21 -- 54 |
conserved protein Rac prophage |
|
_____________185___________________________________223\n_____________|_____________________________________|\n5'-ACU...GUAAA_____A__C_____GA____UA____________G__CUUAC...UAU-3'\n______________GGCGG_GU_AUGGU__UGAC__AGAAAAUAAAAU_UG\n______________|||::_|:_||||:__::||__||||||||||||_||\n______________CCGUU_CG_UACCG__GUUG__UCUUUUAUUUUA_AC\n3'-UUU...AGUCA_____A__U_____G___________________G__ACUGU...UUG-5'\n_____________|_____________________________________|\n_____________55____________________________________20\n |
212 -- 218 |
25 -- 31 |
-28.7009 kcal/mol |
12.2907 kcal/mol |
9.06413 kcal/mol |
185 223@LB@ | |@LB@5'-ACU...GUAAA A C GA UA G CUUAC...UAU-3'@LB@ GGCGG GU AUGGU UGAC AGAAAAUAAAAU UG@LB@ |||:: |: ||||: ::|| |||||||||||| ||@LB@ CCGUU CG UACCG GUUG UCUUUUAUUUUA AC@LB@3'-UUU...AGUCA A U G G ACUGU...UUG-5'@LB@ | |@LB@ 55 20@LB@@LB@@LB@Energy -7.35 kcal/mol@LB@Hybridization Energy -28.7009 kcal/mol@LB@Unfolding Energy - mRNA 12.2907 kcal/mol@LB@Unfolding Energy - sRNA 9.06413 kcal/mol@LB@@LB@Position - mRNA 186 -- 222@LB@Position - sRNA 21 -- 54@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 63 |
0.004757 |
0.2539 |
b1342 |
ydaN |
-13.10 |
0.024145 |
140 -- 198 |
7 -- 70 |
putative Zn(II) transporter |
|
_____________139_______________________________________________________________199\n_____________|_________________________________________________________________|\n5'-CGU...AUGAG______CGU__________CA_____A____A___UAC_______UGCGU_______________CUGUG...AUG-3'\n______________AUGUUG___AA_CAG_GGC_____GA_GGCU_GAC___AAAAUAA______UGAUGAUGGAGGCA\n______________||||||___||_|||_|||_____:|_|||:_:||___|||||||______|||::||::|||||\n______________UACAAC___UU_GUC_CCG_____UU_CCGG_UUG___UUUUAUU______ACUGUUAUUUCCGU\n3'-UUU...AAAUA______CUU__A___A___UUACG__A____G___UC________UUAGAC______________AUAUUG-5'\n_____________|_________________________________________________________________|\n_____________71________________________________________________________________6\n |
192 -- 198 |
7 -- 13 |
-39.9747 kcal/mol |
14.7113 kcal/mol |
12.1606 kcal/mol |
139 199@LB@ | |@LB@5'-CGU...AUGAG CGU CA A A UAC UGCGU CUGUG...AUG-3'@LB@ AUGUUG AA CAG GGC GA GGCU GAC AAAAUAA UGAUGAUGGAGGCA@LB@ |||||| || ||| ||| :| |||: :|| ||||||| |||::||::|||||@LB@ UACAAC UU GUC CCG UU CCGG UUG UUUUAUU ACUGUUAUUUCCGU@LB@3'-UUU...AAAUA CUU A A UUACG A G UC UUAGAC AUAUUG-5'@LB@ | |@LB@ 71 6@LB@@LB@@LB@Energy -13.10 kcal/mol@LB@Hybridization Energy -39.9747 kcal/mol@LB@Unfolding Energy - mRNA 14.7113 kcal/mol@LB@Unfolding Energy - sRNA 12.1606 kcal/mol@LB@@LB@Position - mRNA 140 -- 198@LB@Position - sRNA 7 -- 70@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 155 |
0.01799 |
0.3828 |
b1446 |
ydcY |
-7.41 |
0.363872 |
123 -- 175 |
11 -- 59 |
DUF2526 family protein |
|
_____________122______________________________________________________176\n_____________|________________________________________________________|\n5'-UAU...CUUAC___C____U___AC_____A___C_____CUU___UC_____GA___AU_______UUUCA...ACG-3'\n______________UCA_UGGC__UG____GGC_CCA_GCAGA___AUA__AUUUG__UGA__CGAUAAA\n______________|||_||||__||____|||_|||_:||||___|||__||:||__|||__|:|||||\n______________AGU_ACCG__AC____CCG_GGU_UGUCU___UAU__UAGAC__ACU__GUUAUUU\n3'-UUU...CUUUU___C____UU__GUUA_____________UU____UU___________________CCGUA...UUG-5'\n_____________|________________________________________________________|\n_____________60_______________________________________________________10\n |
169 -- 175 |
11 -- 17 |
-29.7235 kcal/mol |
11.188 kcal/mol |
11.1233 kcal/mol |
122 176@LB@ | |@LB@5'-UAU...CUUAC C U AC A C CUU UC GA AU UUUCA...ACG-3'@LB@ UCA UGGC UG GGC CCA GCAGA AUA AUUUG UGA CGAUAAA@LB@ ||| |||| || ||| ||| :|||| ||| ||:|| ||| |:|||||@LB@ AGU ACCG AC CCG GGU UGUCU UAU UAGAC ACU GUUAUUU@LB@3'-UUU...CUUUU C UU GUUA UU UU CCGUA...UUG-5'@LB@ | |@LB@ 60 10@LB@@LB@@LB@Energy -7.41 kcal/mol@LB@Hybridization Energy -29.7235 kcal/mol@LB@Unfolding Energy - mRNA 11.188 kcal/mol@LB@Unfolding Energy - sRNA 11.1233 kcal/mol@LB@@LB@Position - mRNA 123 -- 175@LB@Position - sRNA 11 -- 59@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 11 -- 17@LB@ |
