| 156 |
0.01801 |
0.3828 |
b1942 |
fliJ |
-11.30 |
0.063944 |
187 -- 254 |
7 -- 65 |
flagellar protein |
|
_____________186______________________________________________________________________255\n_____________|________________________________________________________________________|\n5'-UUC...ACCCA_____UAACGG___A_____GAACAUG_____C____GACCCU______________GCAGA__A_______GAGGA...AGC-3'\n______________GGAGA______CAG_UGGCA_______GUGCG_UGGC______GAAA____GAUCUG_____AA_AGAGGUA\n______________|||:|______|||_|||||_______:|||:_||||______||||____:|||||_____||_|:|||:|\n______________CCUUU______GUC_ACCGU_______UACGU_ACCG______CUUU____UUAGAC_____UU_UUUCCGU\n3'-UUU...UACAA_____UA_________________________U____GGUUGU____UAUU______ACUG___A_______AUAUUG-5'\n_____________|________________________________________________________________________|\n_____________66_______________________________________________________________________6\n |
248 -- 254 |
7 -- 13 |
-39.8056 kcal/mol |
16.3505 kcal/mol |
12.1538 kcal/mol |
186 255@LB@ | |@LB@5'-UUC...ACCCA UAACGG A GAACAUG C GACCCU GCAGA A GAGGA...AGC-3'@LB@ GGAGA CAG UGGCA GUGCG UGGC GAAA GAUCUG AA AGAGGUA@LB@ |||:| ||| ||||| :|||: |||| |||| :||||| || |:|||:|@LB@ CCUUU GUC ACCGU UACGU ACCG CUUU UUAGAC UU UUUCCGU@LB@3'-UUU...UACAA UA U GGUUGU UAUU ACUG A AUAUUG-5'@LB@ | |@LB@ 66 6@LB@@LB@@LB@Energy -11.30 kcal/mol@LB@Hybridization Energy -39.8056 kcal/mol@LB@Unfolding Energy - mRNA 16.3505 kcal/mol@LB@Unfolding Energy - sRNA 12.1538 kcal/mol@LB@@LB@Position - mRNA 187 -- 254@LB@Position - sRNA 7 -- 65@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 179 |
0.02223 |
0.4143 |
b2167 |
fruA |
-7.15 |
0.399094 |
192 -- 200 |
5 -- 13 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________191_______201\n_____________|_________|\n5'-CGC...GCAGG_________AUGAA...AAA-3'\n______________AGAGGCAUA\n______________|:|||||||\n______________UUUCCGUAU\n3'-UUU...UGUUA_________AUUG-5'\n_____________|_________|\n_____________14________4\n |
194 -- 200 |
5 -- 11 |
-11.8443 kcal/mol |
1.8873 kcal/mol |
2.80332 kcal/mol |
191 201@LB@ | |@LB@5'-CGC...GCAGG AUGAA...AAA-3'@LB@ AGAGGCAUA@LB@ |:|||||||@LB@ UUUCCGUAU@LB@3'-UUU...UGUUA AUUG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -7.15 kcal/mol@LB@Hybridization Energy -11.8443 kcal/mol@LB@Unfolding Energy - mRNA 1.8873 kcal/mol@LB@Unfolding Energy - sRNA 2.80332 kcal/mol@LB@@LB@Position - mRNA 192 -- 200@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 59 |
0.004284 |
0.2442 |
b0094 |
ftsA |
-10.23 |
0.109208 |
176 -- 218 |
1 -- 63 |
ATP-binding cell division FtsK recruitment protein |
|
_____________175________________________________________________________________219\n_____________|__________________________________________________________________|\n5'-AAU...GCAAC__________________CA___AG___________________________UCA_____ACG___AGAAA...UCA-3'\n______________AAAAUCAG_______GCA__GGC__AACA________________ACAAUGA___AGGCG___GAC\n______________||||||||_______|||__|||__||||________________|||||:|___||||:___:||\n______________UUUUAGUC_______CGU__CCG__UUGU________________UGUUAUU___UCCGU___UUG\n3'-UUU...CAACC________ACCGUUA___UA___GG____CUUUUAUUUUAGACAC_______________AUA___-5'\n_____________|_________________________________________________________________|\n_____________64________________________________________________________________1\n |
198 -- 204 |
12 -- 18 |
-27.1283 kcal/mol |
4.74085 kcal/mol |
12.1605 kcal/mol |
175 219@LB@ | |@LB@5'-AAU...GCAAC CA AG UCA ACG AGAAA...UCA-3'@LB@ AAAAUCAG GCA GGC AACA ACAAUGA AGGCG GAC@LB@ |||||||| ||| ||| |||| |||||:| ||||: :||@LB@ UUUUAGUC CGU CCG UUGU UGUUAUU UCCGU UUG@LB@3'-UUU...CAACC ACCGUUA UA GG CUUUUAUUUUAGACAC AUA -5'@LB@ | |@LB@ 64 1@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -27.1283 kcal/mol@LB@Unfolding Energy - mRNA 4.74085 kcal/mol@LB@Unfolding Energy - sRNA 12.1605 kcal/mol@LB@@LB@Position - mRNA 176 -- 218@LB@Position - sRNA 1 -- 63@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 82 |
0.006986 |
0.2822 |
b3128 |
garD |
-14.80 |
0.008847 |
185 -- 224 |
15 -- 66 |
D-galactarate dehydrogenase |
|
_____________184__________________________________________________225\n_____________|____________________________________________________|\n5'-AUA...CUGGC________AUU_____________________UC__________A_______GAAAC...UGA-3'\n______________UGGAGAAU_____GCA___CAAUGGCC_AACA______GAAAUC___GACAA\n______________||||:|||_____|||___||||||||_||||______:|||||___|||||\n______________ACCUUUUA_____CGU___GUUACCGG_UUGU______UUUUAG___CUGUU\n3'-UUU...AUACA________GUCAC___UAC________G____CUUUUA______ACA_____AUUUC...UUG-5'\n_____________|____________________________________________________|\n_____________67___________________________________________________14\n |
200 -- 206 |
40 -- 46 |
-31.4715 kcal/mol |
5.54782 kcal/mol |
11.1209 kcal/mol |
184 225@LB@ | |@LB@5'-AUA...CUGGC AUU UC A GAAAC...UGA-3'@LB@ UGGAGAAU GCA CAAUGGCC AACA GAAAUC GACAA@LB@ ||||:||| ||| |||||||| |||| :||||| |||||@LB@ ACCUUUUA CGU GUUACCGG UUGU UUUUAG CUGUU@LB@3'-UUU...AUACA GUCAC UAC G CUUUUA ACA AUUUC...UUG-5'@LB@ | |@LB@ 67 14@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -31.4715 kcal/mol@LB@Unfolding Energy - mRNA 5.54782 kcal/mol@LB@Unfolding Energy - sRNA 11.1209 kcal/mol@LB@@LB@Position - mRNA 185 -- 224@LB@Position - sRNA 15 -- 66@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 199 |
0.02539 |
0.4256 |
b2094 |
gatA |
-8.91 |
0.199733 |
27 -- 47 |
1 -- 21 |
galactitol-specific enzyme IIA component of PTS |
|
_____________26_____________________48\n_____________|______________________|\n5'-UUA...UGAUG____AUCU______________AUCCC...AUG-3'\n______________GUGA____UGAAGGCGUG_GAC\n______________||||____|:|||||:|:_:||\n______________CACU____AUUUCCGUAU_UUG\n3'-UUU...UUAGA____GUU___________A___-5'\n_____________|_____________________|\n_____________22____________________1\n |
38 -- 44 |
5 -- 11 |
-17.7737 kcal/mol |
4.45083 kcal/mol |
4.41334 kcal/mol |
26 48@LB@ | |@LB@5'-UUA...UGAUG AUCU AUCCC...AUG-3'@LB@ GUGA UGAAGGCGUG GAC@LB@ |||| |:|||||:|: :||@LB@ CACU AUUUCCGUAU UUG@LB@3'-UUU...UUAGA GUU A -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -8.91 kcal/mol@LB@Hybridization Energy -17.7737 kcal/mol@LB@Unfolding Energy - mRNA 4.45083 kcal/mol@LB@Unfolding Energy - sRNA 4.41334 kcal/mol@LB@@LB@Position - mRNA 27 -- 47@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 195 |
0.02483 |
0.4256 |
b2905 |
gcvT |
-11.07 |
0.071827 |
75 -- 92 |
41 -- 59 |
aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex |
|
_____________74__________________93\n_____________|___________________|\n5'-CUG...CUGUU_____________UCA___AAAAG...AAA-3'\n______________UCGGUGGUAA_GU___GGC\n______________||:||||:||_|:___|||\n______________AGUCACCGUU_CG___CCG\n3'-UUU...CUUUU__________A__UUA___GGUUG...UUG-5'\n_____________|___________________|\n_____________60__________________40\n |
78 -- 84 |
50 -- 56 |
-19.3336 kcal/mol |
3.99003 kcal/mol |
4.26967 kcal/mol |
74 93@LB@ | |@LB@5'-CUG...CUGUU UCA AAAAG...AAA-3'@LB@ UCGGUGGUAA GU GGC@LB@ ||:||||:|| |: |||@LB@ AGUCACCGUU CG CCG@LB@3'-UUU...CUUUU A UUA GGUUG...UUG-5'@LB@ | |@LB@ 60 40@LB@@LB@@LB@Energy -11.07 kcal/mol@LB@Hybridization Energy -19.3336 kcal/mol@LB@Unfolding Energy - mRNA 3.99003 kcal/mol@LB@Unfolding Energy - sRNA 4.26967 kcal/mol@LB@@LB@Position - mRNA 75 -- 92@LB@Position - sRNA 41 -- 59@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 10 |
0.0004066 |
0.1262 |
b3429 |
glgA |
-9.74 |
0.137242 |
173 -- 185 |
51 -- 64 |
glycogen synthase |
|
_____________172____________186\n_____________|______________|\n5'-GUA...GCUAC______________UAAAC...ACG-3'\n______________GGAAGUUAG_GGCA\n______________|:||:|:||_||||\n______________CUUUUAGUC_CCGU\n3'-UUU...ACAAC_________A____UACGU...UUG-5'\n_____________|______________|\n_____________65_____________50\n |
175 -- 181 |
56 -- 62 |
-15.3924 kcal/mol |
2.76007 kcal/mol |
2.8882 kcal/mol |
172 186@LB@ | |@LB@5'-GUA...GCUAC UAAAC...ACG-3'@LB@ GGAAGUUAG GGCA@LB@ |:||:|:|| ||||@LB@ CUUUUAGUC CCGU@LB@3'-UUU...ACAAC A UACGU...UUG-5'@LB@ | |@LB@ 65 50@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -15.3924 kcal/mol@LB@Unfolding Energy - mRNA 2.76007 kcal/mol@LB@Unfolding Energy - sRNA 2.8882 kcal/mol@LB@@LB@Position - mRNA 173 -- 185@LB@Position - sRNA 51 -- 64@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 89 |
0.007733 |
0.2889 |
b3426 |
glpD |
-8.48 |
0.239884 |
186 -- 234 |
7 -- 64 |
sn-glycerol-3-phosphate dehydrogenase aerobic FAD/NAD(P)-binding |
|
_____________185__________________________________________________________235\n_____________|____________________________________________________________|\n5'-AAC...CGAAA_U____G________________AAA________UCU_______________________GCAUC...AGG-3'\n______________G_GAAU_AG_GGCA__GC_AUGG___CCAA_AGA______GA_UUGUGAUAG__GGGGCG\n______________|_:|||_||_||||__||_||||___||||_|||______:|_:|||||:|:__::|||:\n______________C_UUUA_UC_CCGU__CG_UACC___GGUU_UCU______UU_GACACUGUU__UUCCGU\n3'-UUU...ACAAC_U____G__A____UA__U____G______G___UUUAUU__A_________AU______AUAUUG-5'\n_____________|____________________________________________________________|\n_____________65___________________________________________________________6\n |
222 -- 228 |
15 -- 21 |
-34.508 kcal/mol |
13.8761 kcal/mol |
12.1536 kcal/mol |
185 235@LB@ | |@LB@5'-AAC...CGAAA U G AAA UCU GCAUC...AGG-3'@LB@ G GAAU AG GGCA GC AUGG CCAA AGA GA UUGUGAUAG GGGGCG@LB@ | :||| || |||| || |||| |||| ||| :| :|||||:|: ::|||:@LB@ C UUUA UC CCGU CG UACC GGUU UCU UU GACACUGUU UUCCGU@LB@3'-UUU...ACAAC U G A UA U G G UUUAUU A AU AUAUUG-5'@LB@ | |@LB@ 65 6@LB@@LB@@LB@Energy -8.48 kcal/mol@LB@Hybridization Energy -34.508 kcal/mol@LB@Unfolding Energy - mRNA 13.8761 kcal/mol@LB@Unfolding Energy - sRNA 12.1536 kcal/mol@LB@@LB@Position - mRNA 186 -- 234@LB@Position - sRNA 7 -- 64@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 173 |
0.02087 |
0.4033 |
b2239 |
glpQ |
-12.95 |
0.026326 |
256 -- 274 |
41 -- 66 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________255________________________275\n_____________|__________________________|\n5'-CGG...AGUCA__________________________GGCGG...UCA-3'\n______________UGGGAA_______GCAGUGCAAUGGC\n______________|||:||_______|||:|||||||||\n______________ACCUUU_______CGUUACGUUACCG\n3'-UUU...AUACA______UAGUCAC_____________GGUUG...UUG-5'\n_____________|__________________________|\n_____________67_________________________40\n |
268 -- 274 |
41 -- 47 |
-26.6029 kcal/mol |
7.82977 kcal/mol |
5.82355 kcal/mol |
255 275@LB@ | |@LB@5'-CGG...AGUCA GGCGG...UCA-3'@LB@ UGGGAA GCAGUGCAAUGGC@LB@ |||:|| |||:|||||||||@LB@ ACCUUU CGUUACGUUACCG@LB@3'-UUU...AUACA UAGUCAC GGUUG...UUG-5'@LB@ | |@LB@ 67 40@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -26.6029 kcal/mol@LB@Unfolding Energy - mRNA 7.82977 kcal/mol@LB@Unfolding Energy - sRNA 5.82355 kcal/mol@LB@@LB@Position - mRNA 256 -- 274@LB@Position - sRNA 41 -- 66@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 29 |
0.001819 |
0.2065 |
b3648 |
gmk |
-8.89 |
0.201842 |
236 -- 243 |
51 -- 58 |
guanylate kinase |
|
_____________235______244\n_____________|________|\n5'-GUG...GCCCC________CGGGU...CCC-3'\n______________CAGUGGCG\n______________|||||||:\n______________GUCACCGU\n3'-UUU...UUUUA________UACGU...UUG-5'\n_____________|________|\n_____________59_______50\n |
237 -- 243 |
51 -- 57 |
-13.8917 kcal/mol |
2.3096 kcal/mol |
2.69685 kcal/mol |
235 244@LB@ | |@LB@5'-GUG...GCCCC CGGGU...CCC-3'@LB@ CAGUGGCG@LB@ |||||||:@LB@ GUCACCGU@LB@3'-UUU...UUUUA UACGU...UUG-5'@LB@ | |@LB@ 59 50@LB@@LB@@LB@Energy -8.89 kcal/mol@LB@Hybridization Energy -13.8917 kcal/mol@LB@Unfolding Energy - mRNA 2.3096 kcal/mol@LB@Unfolding Energy - sRNA 2.69685 kcal/mol@LB@@LB@Position - mRNA 236 -- 243@LB@Position - sRNA 51 -- 58@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 51 -- 57@LB@ |
