71 |
0.027 |
0.29 |
ct_712 |
N/A |
-6.32 |
0.201489 |
257 -- 263 |
81 -- 87 |
type III secretion system effector protein |
|
_____________256_____264\n_____________|_______|\n5'-CAG...GAGAC_______CCUCG...CAG-3'\n______________UGCGGCU\n______________|:|||||\n______________AUGCCGA\n3'-UUU...CCUCU_______UUGAG...GAA-5'\n_____________|_______|\n_____________88______80\n |
257 -- 263 |
81 -- 87 |
-10.8048 kcal/mol |
3.3916 kcal/mol |
1.09752 kcal/mol |
256 264@LB@ | |@LB@5'-CAG...GAGAC CCUCG...CAG-3'@LB@ UGCGGCU@LB@ |:|||||@LB@ AUGCCGA@LB@3'-UUU...CCUCU UUGAG...GAA-5'@LB@ | |@LB@ 88 80@LB@@LB@@LB@Energy -6.32 kcal/mol@LB@Hybridization Energy -10.8048 kcal/mol@LB@Unfolding Energy - mRNA 3.3916 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 257 -- 263@LB@Position - sRNA 81 -- 87@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 81 -- 87@LB@ |
73 |
0.02714 |
0.29 |
ct_211 |
N/A |
-9.30 |
0.041995 |
126 -- 170 |
20 -- 59 |
|
|
_____________125____________________________________________171\n_____________|______________________________________________|\n5'-AGA...UCAAG_____AUUCU_______AAGUC____UUUGAU_________C____ACGAA...UUU-3'\n______________CCCCU_____CUGUGUG_____CAUU_______GAAGCUAU_CCAU\n______________||||:_____||||||:_____||:|_______||||||||_||||\n______________GGGGG_____GACACAU_____GUGA_______CUUCGAUA_GGUA\n3'-UUU...CUGAA_________________GUUU_____UCUCAGU________A____CCGCA...GAA-5'\n_____________|______________________________________________|\n_____________60_____________________________________________19\n |
159 -- 165 |
25 -- 31 |
-32.2967 kcal/mol |
9.12092 kcal/mol |
13.8789 kcal/mol |
125 171@LB@ | |@LB@5'-AGA...UCAAG AUUCU AAGUC UUUGAU C ACGAA...UUU-3'@LB@ CCCCU CUGUGUG CAUU GAAGCUAU CCAU@LB@ ||||: ||||||: ||:| |||||||| ||||@LB@ GGGGG GACACAU GUGA CUUCGAUA GGUA@LB@3'-UUU...CUGAA GUUU UCUCAGU A CCGCA...GAA-5'@LB@ | |@LB@ 60 19@LB@@LB@@LB@Energy -9.30 kcal/mol@LB@Hybridization Energy -32.2967 kcal/mol@LB@Unfolding Energy - mRNA 9.12092 kcal/mol@LB@Unfolding Energy - sRNA 13.8789 kcal/mol@LB@@LB@Position - mRNA 126 -- 170@LB@Position - sRNA 20 -- 59@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 25 -- 31@LB@ |
74 |
0.02719 |
0.29 |
ct_114 |
N/A |
-7.65 |
0.102976 |
115 -- 129 |
17 -- 32 |
|
|
_____________114______________130\n_____________|________________|\n5'-AGG...GCGGU______UA________AAAAG...AAA-3'\n______________GGAGCU___CUAUGGC\n______________|:||||___|:|||||\n______________CUUCGA___GGUACCG\n3'-UUU...UCAGU______UAA_______CAAUC...GAA-5'\n_____________|________________|\n_____________33_______________16\n |
123 -- 129 |
17 -- 23 |
-17.2748 kcal/mol |
4.65579 kcal/mol |
4.96575 kcal/mol |
114 130@LB@ | |@LB@5'-AGG...GCGGU UA AAAAG...AAA-3'@LB@ GGAGCU CUAUGGC@LB@ |:|||| |:|||||@LB@ CUUCGA GGUACCG@LB@3'-UUU...UCAGU UAA CAAUC...GAA-5'@LB@ | |@LB@ 33 16@LB@@LB@@LB@Energy -7.65 kcal/mol@LB@Hybridization Energy -17.2748 kcal/mol@LB@Unfolding Energy - mRNA 4.65579 kcal/mol@LB@Unfolding Energy - sRNA 4.96575 kcal/mol@LB@@LB@Position - mRNA 115 -- 129@LB@Position - sRNA 17 -- 32@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 17 -- 23@LB@ |
77 |
0.02807 |
0.29 |
ct_309 |
N/A |
-7.23 |
0.128520 |
50 -- 64 |
17 -- 33 |
|
|
_____________49________________65\n_____________|_________________|\n5'-AGA...GCUUA_________GU______UAAAU...UAA-3'\n______________AGGGGCUAU____UGGU\n______________||::|||||____|||:\n______________UCUUCGAUA____ACCG\n3'-UUU...CUCAG_________AGGU____CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
52 -- 58 |
25 -- 31 |
-14.8286 kcal/mol |
2.62564 kcal/mol |
4.97804 kcal/mol |
49 65@LB@ | |@LB@5'-AGA...GCUUA GU UAAAU...UAA-3'@LB@ AGGGGCUAU UGGU@LB@ ||::||||| |||:@LB@ UCUUCGAUA ACCG@LB@3'-UUU...CUCAG AGGU CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -7.23 kcal/mol@LB@Hybridization Energy -14.8286 kcal/mol@LB@Unfolding Energy - mRNA 2.62564 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 50 -- 64@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 25 -- 31@LB@ |
78 |
0.0282 |
0.29 |
ct_131 |
N/A |
-9.30 |
0.042003 |
199 -- 219 |
17 -- 35 |
|
|
_____________198___________________220\n_____________|_____________________|\n5'-GAG...UGAAU___U_____GUUC________AUAAA...AAU-3'\n______________UCA_GAAGC____UCCAUGGU\n______________|||_|||||____|||||||:\n______________AGU_CUUCG____AGGUACCG\n3'-UUU...AUCUC_________AUA_________CAAUC...GAA-5'\n_____________|_____________________|\n_____________36____________________16\n |
213 -- 219 |
17 -- 23 |
-20.9121 kcal/mol |
6.63751 kcal/mol |
4.9781 kcal/mol |
198 220@LB@ | |@LB@5'-GAG...UGAAU U GUUC AUAAA...AAU-3'@LB@ UCA GAAGC UCCAUGGU@LB@ ||| ||||| |||||||:@LB@ AGU CUUCG AGGUACCG@LB@3'-UUU...AUCUC AUA CAAUC...GAA-5'@LB@ | |@LB@ 36 16@LB@@LB@@LB@Energy -9.30 kcal/mol@LB@Hybridization Energy -20.9121 kcal/mol@LB@Unfolding Energy - mRNA 6.63751 kcal/mol@LB@Unfolding Energy - sRNA 4.9781 kcal/mol@LB@@LB@Position - mRNA 199 -- 219@LB@Position - sRNA 17 -- 35@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 17 -- 23@LB@ |
83 |
0.0294 |
0.29 |
ct_767 |
N/A |
-5.43 |
0.301596 |
255 -- 261 |
54 -- 60 |
|
|
_____________254_____262\n_____________|_______|\n5'-CUC...UUUAU_______UGGAA...AAC-3'\n______________UCCCCCU\n______________||||||:\n______________AGGGGGG\n3'-UUU...ACUGA_______ACACA...GAA-5'\n_____________|_______|\n_____________61______53\n |
255 -- 261 |
54 -- 60 |
-13.2051 kcal/mol |
1.33057 kcal/mol |
6.44182 kcal/mol |
254 262@LB@ | |@LB@5'-CUC...UUUAU UGGAA...AAC-3'@LB@ UCCCCCU@LB@ ||||||:@LB@ AGGGGGG@LB@3'-UUU...ACUGA ACACA...GAA-5'@LB@ | |@LB@ 61 53@LB@@LB@@LB@Energy -5.43 kcal/mol@LB@Hybridization Energy -13.2051 kcal/mol@LB@Unfolding Energy - mRNA 1.33057 kcal/mol@LB@Unfolding Energy - sRNA 6.44182 kcal/mol@LB@@LB@Position - mRNA 255 -- 261@LB@Position - sRNA 54 -- 60@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 54 -- 60@LB@ |
84 |
0.03042 |
0.29 |
ct_726 |
N/A |
-6.32 |
0.200732 |
30 -- 36 |
81 -- 87 |
cell division protein |
|
_____________29______37\n_____________|_______|\n5'-AGG...CCCCC_______UGCUG...AUC-3'\n______________UAUGGCU\n______________||:||||\n______________AUGCCGA\n3'-UUU...CCUCU_______UUGAG...GAA-5'\n_____________|_______|\n_____________88______80\n |
30 -- 36 |
81 -- 87 |
-8.84564 kcal/mol |
1.42457 kcal/mol |
1.09752 kcal/mol |
29 37@LB@ | |@LB@5'-AGG...CCCCC UGCUG...AUC-3'@LB@ UAUGGCU@LB@ ||:||||@LB@ AUGCCGA@LB@3'-UUU...CCUCU UUGAG...GAA-5'@LB@ | |@LB@ 88 80@LB@@LB@@LB@Energy -6.32 kcal/mol@LB@Hybridization Energy -8.84564 kcal/mol@LB@Unfolding Energy - mRNA 1.42457 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 30 -- 36@LB@Position - sRNA 81 -- 87@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 81 -- 87@LB@ |
94 |
0.03394 |
0.2959 |
ct_249 |
N/A |
-6.52 |
0.182571 |
223 -- 229 |
80 -- 86 |
|
|
_____________222_____230\n_____________|_______|\n5'-UUG...UGAUC_______UUGGG...CUG-3'\n______________AUGGCUG\n______________|:||||:\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
223 -- 229 |
80 -- 86 |
-8.72307 kcal/mol |
1.13798 kcal/mol |
1.06449 kcal/mol |
222 230@LB@ | |@LB@5'-UUG...UGAUC UUGGG...CUG-3'@LB@ AUGGCUG@LB@ |:||||:@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -6.52 kcal/mol@LB@Hybridization Energy -8.72307 kcal/mol@LB@Unfolding Energy - mRNA 1.13798 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 223 -- 229@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 80 -- 86@LB@ |
95 |
0.03456 |
0.2959 |
ct_073 |
N/A |
-12.13 |
0.007785 |
261 -- 279 |
41 -- 58 |
contains leader (19) peptide |
|
_____________260_________________280\n_____________|___________________|\n5'-GAC...CUGAU_________AUU_______UGACA...GGG-3'\n______________CCCUCUGUG___CAAACAU\n______________|||:|||||___||||||:\n______________GGGGGACAC___GUUUGUG\n3'-UUU...UGAAG_________AU________AUCUC...GAA-5'\n_____________|___________________|\n_____________59__________________40\n |
263 -- 269 |
50 -- 56 |
-22.185 kcal/mol |
2.22773 kcal/mol |
7.82865 kcal/mol |
260 280@LB@ | |@LB@5'-GAC...CUGAU AUU UGACA...GGG-3'@LB@ CCCUCUGUG CAAACAU@LB@ |||:||||| ||||||:@LB@ GGGGGACAC GUUUGUG@LB@3'-UUU...UGAAG AU AUCUC...GAA-5'@LB@ | |@LB@ 59 40@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -22.185 kcal/mol@LB@Unfolding Energy - mRNA 2.22773 kcal/mol@LB@Unfolding Energy - sRNA 7.82865 kcal/mol@LB@@LB@Position - mRNA 261 -- 279@LB@Position - sRNA 41 -- 58@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 50 -- 56@LB@ |
96 |
0.03475 |
0.2959 |
ct_548 |
N/A |
-8.10 |
0.081484 |
276 -- 282 |
54 -- 60 |
|
|
_____________275_____283\n_____________|_______|\n5'-ACA...UGCUC_______ACUAU...AAU-3'\n______________UCCCCCC\n______________|||||||\n______________AGGGGGG\n3'-UUU...ACUGA_______ACACA...GAA-5'\n_____________|_______|\n_____________61______53\n |
276 -- 282 |
54 -- 60 |
-15.7273 kcal/mol |
1.19056 kcal/mol |
6.44182 kcal/mol |
275 283@LB@ | |@LB@5'-ACA...UGCUC ACUAU...AAU-3'@LB@ UCCCCCC@LB@ |||||||@LB@ AGGGGGG@LB@3'-UUU...ACUGA ACACA...GAA-5'@LB@ | |@LB@ 61 53@LB@@LB@@LB@Energy -8.10 kcal/mol@LB@Hybridization Energy -15.7273 kcal/mol@LB@Unfolding Energy - mRNA 1.19056 kcal/mol@LB@Unfolding Energy - sRNA 6.44182 kcal/mol@LB@@LB@Position - mRNA 276 -- 282@LB@Position - sRNA 54 -- 60@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 54 -- 60@LB@ |