135 |
0.05472 |
0.3262 |
ct_283 |
N/A |
-6.89 |
0.152000 |
262 -- 284 |
14 -- 35 |
|
|
_____________261______________________285\n_____________|________________________|\n5'-UAC...GUUUA_____CU________GC_______UGUUU...UUG-3'\n______________UCGGA__AGUUA_UC__UGGCGUU\n______________||:||__||:||_||__|||||||\n______________AGUCU__UCGAU_AG__ACCGCAA\n3'-UUU...AUCUC____________A__GU_______UCUUA...GAA-5'\n_____________|________________________|\n_____________36_______________________13\n |
278 -- 284 |
14 -- 20 |
-19.9844 kcal/mol |
4.64246 kcal/mol |
8.44936 kcal/mol |
261 285@LB@ | |@LB@5'-UAC...GUUUA CU GC UGUUU...UUG-3'@LB@ UCGGA AGUUA UC UGGCGUU@LB@ ||:|| ||:|| || |||||||@LB@ AGUCU UCGAU AG ACCGCAA@LB@3'-UUU...AUCUC A GU UCUUA...GAA-5'@LB@ | |@LB@ 36 13@LB@@LB@@LB@Energy -6.89 kcal/mol@LB@Hybridization Energy -19.9844 kcal/mol@LB@Unfolding Energy - mRNA 4.64246 kcal/mol@LB@Unfolding Energy - sRNA 8.44936 kcal/mol@LB@@LB@Position - mRNA 262 -- 284@LB@Position - sRNA 14 -- 35@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 14 -- 20@LB@ |
137 |
0.05536 |
0.3262 |
ct_389 |
N/A |
-5.69 |
0.269629 |
175 -- 181 |
80 -- 86 |
|
|
_____________174_____182\n_____________|_______|\n5'-GUU...AUAAC_______UCUCA...GCC-3'\n______________GCGGCUG\n______________:|||||:\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
175 -- 181 |
80 -- 86 |
-10.4159 kcal/mol |
3.66497 kcal/mol |
1.06449 kcal/mol |
174 182@LB@ | |@LB@5'-GUU...AUAAC UCUCA...GCC-3'@LB@ GCGGCUG@LB@ :|||||:@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -5.69 kcal/mol@LB@Hybridization Energy -10.4159 kcal/mol@LB@Unfolding Energy - mRNA 3.66497 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 175 -- 181@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 80 -- 86@LB@ |
141 |
0.05655 |
0.3262 |
ct_645 |
N/A |
-6.85 |
0.155161 |
266 -- 276 |
17 -- 28 |
|
|
_____________265__________277\n_____________|____________|\n5'-GAG...GUUCU____________UGCCA...AGU-3'\n______________UUGUUCC_UGGC\n______________:|:||||_||||\n______________GAUAAGG_ACCG\n3'-UUU...UCUUC_______U____CAAUC...GAA-5'\n_____________|____________|\n_____________29___________16\n |
266 -- 272 |
22 -- 28 |
-12.7306 kcal/mol |
1.25811 kcal/mol |
4.62088 kcal/mol |
265 277@LB@ | |@LB@5'-GAG...GUUCU UGCCA...AGU-3'@LB@ UUGUUCC UGGC@LB@ :|:|||| ||||@LB@ GAUAAGG ACCG@LB@3'-UUU...UCUUC U CAAUC...GAA-5'@LB@ | |@LB@ 29 16@LB@@LB@@LB@Energy -6.85 kcal/mol@LB@Hybridization Energy -12.7306 kcal/mol@LB@Unfolding Energy - mRNA 1.25811 kcal/mol@LB@Unfolding Energy - sRNA 4.62088 kcal/mol@LB@@LB@Position - mRNA 266 -- 276@LB@Position - sRNA 17 -- 28@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 22 -- 28@LB@ |
142 |
0.0566 |
0.3262 |
ct_284 |
N/A |
-6.95 |
0.147726 |
278 -- 292 |
18 -- 30 |
phospholipase D |
|
_____________277_____________293\n_____________|_______________|\n5'-AUC...ACUAU_________GG____AGACAAAA-3'\n______________AGCUAUUCC__AUGG\n______________|||||||||__||||\n______________UCGAUAAGG__UACC\n3'-UUU...AGUCU_______________GCAAU...GAA-5'\n_____________|_______________|\n_____________31______________17\n |
280 -- 286 |
22 -- 28 |
-16.5616 kcal/mol |
4.87795 kcal/mol |
4.73403 kcal/mol |
277 293@LB@ | |@LB@5'-AUC...ACUAU GG AGACAAAA-3'@LB@ AGCUAUUCC AUGG@LB@ ||||||||| ||||@LB@ UCGAUAAGG UACC@LB@3'-UUU...AGUCU GCAAU...GAA-5'@LB@ | |@LB@ 31 17@LB@@LB@@LB@Energy -6.95 kcal/mol@LB@Hybridization Energy -16.5616 kcal/mol@LB@Unfolding Energy - mRNA 4.87795 kcal/mol@LB@Unfolding Energy - sRNA 4.73403 kcal/mol@LB@@LB@Position - mRNA 278 -- 292@LB@Position - sRNA 18 -- 30@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 22 -- 28@LB@ |
145 |
0.05831 |
0.3298 |
ct_635 |
N/A |
-5.11 |
0.346704 |
276 -- 282 |
53 -- 59 |
|
|
_____________275_____283\n_____________|_______|\n5'-AUC...UCGAA_______UUGGA...CUG-3'\n______________CCCUCCU\n______________|||:|||\n______________GGGGGGA\n3'-UUU...CUGAA_______CACAU...GAA-5'\n_____________|_______|\n_____________60______52\n |
276 -- 282 |
53 -- 59 |
-11.2032 kcal/mol |
0.619026 kcal/mol |
5.47887 kcal/mol |
275 283@LB@ | |@LB@5'-AUC...UCGAA UUGGA...CUG-3'@LB@ CCCUCCU@LB@ |||:|||@LB@ GGGGGGA@LB@3'-UUU...CUGAA CACAU...GAA-5'@LB@ | |@LB@ 60 52@LB@@LB@@LB@Energy -5.11 kcal/mol@LB@Hybridization Energy -11.2032 kcal/mol@LB@Unfolding Energy - mRNA 0.619026 kcal/mol@LB@Unfolding Energy - sRNA 5.47887 kcal/mol@LB@@LB@Position - mRNA 276 -- 282@LB@Position - sRNA 53 -- 59@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 53 -- 59@LB@ |
151 |
0.06398 |
0.3424 |
ct_647 |
N/A |
-6.81 |
0.158308 |
265 -- 281 |
12 -- 34 |
|
|
_____________264_____________________282\n_____________|_______________________|\n5'-UAU...UGCAA_______________________CGUCA...AGG-3'\n______________UAGGAGC______AUGGUGUUGG\n______________:||:|||______||||:|||:|\n______________GUCUUCG______UACCGCAAUC\n3'-UUU...UCUCA_______AUAAGG__________UUAUG...GAA-5'\n_____________|_______________________|\n_____________35______________________11\n |
274 -- 280 |
13 -- 19 |
-18.8273 kcal/mol |
3.44317 kcal/mol |
8.57325 kcal/mol |
264 282@LB@ | |@LB@5'-UAU...UGCAA CGUCA...AGG-3'@LB@ UAGGAGC AUGGUGUUGG@LB@ :||:||| ||||:|||:|@LB@ GUCUUCG UACCGCAAUC@LB@3'-UUU...UCUCA AUAAGG UUAUG...GAA-5'@LB@ | |@LB@ 35 11@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -18.8273 kcal/mol@LB@Unfolding Energy - mRNA 3.44317 kcal/mol@LB@Unfolding Energy - sRNA 8.57325 kcal/mol@LB@@LB@Position - mRNA 265 -- 281@LB@Position - sRNA 12 -- 34@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 13 -- 19@LB@ |
155 |
0.06493 |
0.3424 |
ct_355 |
N/A |
-6.27 |
0.205473 |
16 -- 22 |
80 -- 86 |
|
|
_____________15______23\n_____________|_______|\n5'-GUU...UUCUG_______GGUCC...CCU-3'\n______________ACGGCUG\n______________||||||:\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
16 -- 22 |
80 -- 86 |
-10.68 kcal/mol |
3.341 kcal/mol |
1.06449 kcal/mol |
15 23@LB@ | |@LB@5'-GUU...UUCUG GGUCC...CCU-3'@LB@ ACGGCUG@LB@ ||||||:@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -10.68 kcal/mol@LB@Unfolding Energy - mRNA 3.341 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 16 -- 22@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 80 -- 86@LB@ |
156 |
0.06505 |
0.3424 |
ct_254 |
N/A |
-6.97 |
0.146186 |
84 -- 91 |
80 -- 87 |
|
|
_____________83_______92\n_____________|________|\n5'-GUC...AUCGU________GCGUU...UAC-3'\n______________UAUGGCUG\n______________||:||||:\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
85 -- 91 |
80 -- 86 |
-9.90306 kcal/mol |
1.8348 kcal/mol |
1.09752 kcal/mol |
83 92@LB@ | |@LB@5'-GUC...AUCGU GCGUU...UAC-3'@LB@ UAUGGCUG@LB@ ||:||||:@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -6.97 kcal/mol@LB@Hybridization Energy -9.90306 kcal/mol@LB@Unfolding Energy - mRNA 1.8348 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 84 -- 91@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 80 -- 86@LB@ |
159 |
0.06732 |
0.3424 |
ct_663 |
N/A |
-7.57 |
0.107718 |
228 -- 234 |
15 -- 21 |
type III secretion system chaperone |
|
_____________227_____235\n_____________|_______|\n5'-UCU...AUUUU_______AUAUG...GCC-3'\n______________GUGGCGU\n______________:||||||\n______________UACCGCA\n3'-UUU...UAAGG_______AUCUU...GAA-5'\n_____________|_______|\n_____________22______14\n |
228 -- 234 |
15 -- 21 |
-10.4333 kcal/mol |
1.67755 kcal/mol |
1.18845 kcal/mol |
227 235@LB@ | |@LB@5'-UCU...AUUUU AUAUG...GCC-3'@LB@ GUGGCGU@LB@ :||||||@LB@ UACCGCA@LB@3'-UUU...UAAGG AUCUU...GAA-5'@LB@ | |@LB@ 22 14@LB@@LB@@LB@Energy -7.57 kcal/mol@LB@Hybridization Energy -10.4333 kcal/mol@LB@Unfolding Energy - mRNA 1.67755 kcal/mol@LB@Unfolding Energy - sRNA 1.18845 kcal/mol@LB@@LB@Position - mRNA 228 -- 234@LB@Position - sRNA 15 -- 21@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 15 -- 21@LB@ |
160 |
0.06752 |
0.3424 |
ct_324 |
N/A |
-4.86 |
0.383763 |
195 -- 205 |
17 -- 27 |
|
|
_____________194_________206\n_____________|___________|\n5'-ACA...GUAGA__GG_______CAAAG...UGC-3'\n______________UA__CCAUGGU\n______________||__||||||:\n______________AU__GGUACCG\n3'-UUU...CUUCG__AA_______CAAUC...GAA-5'\n_____________|___________|\n_____________28__________16\n |
199 -- 205 |
17 -- 23 |
-11.7516 kcal/mol |
2.4023 kcal/mol |
4.49196 kcal/mol |
194 206@LB@ | |@LB@5'-ACA...GUAGA GG CAAAG...UGC-3'@LB@ UA CCAUGGU@LB@ || ||||||:@LB@ AU GGUACCG@LB@3'-UUU...CUUCG AA CAAUC...GAA-5'@LB@ | |@LB@ 28 16@LB@@LB@@LB@Energy -4.86 kcal/mol@LB@Hybridization Energy -11.7516 kcal/mol@LB@Unfolding Energy - mRNA 2.4023 kcal/mol@LB@Unfolding Energy - sRNA 4.49196 kcal/mol@LB@@LB@Position - mRNA 195 -- 205@LB@Position - sRNA 17 -- 27@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 17 -- 23@LB@ |