82 |
0.02927 |
0.29 |
ct_342 |
rs21 |
-5.39 |
0.307662 |
118 -- 125 |
14 -- 21 |
30S ribosomal protein S21 |
|
_____________117______126\n_____________|________|\n5'-UUA...UAAAA________ACAAU...AGU-3'\n______________GUGGUGUU\n______________:|||:|||\n______________UACCGCAA\n3'-UUU...UAAGG________UCUUA...GAA-5'\n_____________|________|\n_____________22_______13\n |
119 -- 125 |
14 -- 20 |
-8.72589 kcal/mol |
2.15057 kcal/mol |
1.18847 kcal/mol |
117 126@LB@ | |@LB@5'-UUA...UAAAA ACAAU...AGU-3'@LB@ GUGGUGUU@LB@ :|||:|||@LB@ UACCGCAA@LB@3'-UUU...UAAGG UCUUA...GAA-5'@LB@ | |@LB@ 22 13@LB@@LB@@LB@Energy -5.39 kcal/mol@LB@Hybridization Energy -8.72589 kcal/mol@LB@Unfolding Energy - mRNA 2.15057 kcal/mol@LB@Unfolding Energy - sRNA 1.18847 kcal/mol@LB@@LB@Position - mRNA 118 -- 125@LB@Position - sRNA 14 -- 21@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 14 -- 20@LB@ |
85 |
0.03073 |
0.29 |
ct_522 |
rs3 |
-5.11 |
0.345416 |
189 -- 204 |
18 -- 34 |
30S ribosomal protein S3 |
|
_____________188_______________205\n_____________|_________________|\n5'-UGU...GGCAG_______AAGG______GUCAA...UCA-3'\n______________UAGGAGU_____UAUGG\n______________:||:||:_____:||||\n______________GUCUUCG_____GUACC\n3'-UUU...UCUCA_______AUAAG_____GCAAU...GAA-5'\n_____________|_________________|\n_____________35________________17\n |
189 -- 195 |
28 -- 34 |
-12.0284 kcal/mol |
1.93617 kcal/mol |
4.97803 kcal/mol |
188 205@LB@ | |@LB@5'-UGU...GGCAG AAGG GUCAA...UCA-3'@LB@ UAGGAGU UAUGG@LB@ :||:||: :||||@LB@ GUCUUCG GUACC@LB@3'-UUU...UCUCA AUAAG GCAAU...GAA-5'@LB@ | |@LB@ 35 17@LB@@LB@@LB@Energy -5.11 kcal/mol@LB@Hybridization Energy -12.0284 kcal/mol@LB@Unfolding Energy - mRNA 1.93617 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 189 -- 204@LB@Position - sRNA 18 -- 34@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 28 -- 34@LB@ |
44 |
0.01666 |
0.29 |
ct_438 |
rs7 |
-6.33 |
0.200160 |
214 -- 223 |
79 -- 88 |
30S ribosomal protein S7 |
|
_____________213________224\n_____________|__________|\n5'-GCA...ACGAC__________GAAGA...ACG-3'\n______________AUGCGGCUGA\n______________||:|||||:|\n______________UAUGCCGAUU\n3'-UUU...GCCUC__________GAGGU...GAA-5'\n_____________|__________|\n_____________89_________78\n |
217 -- 223 |
79 -- 85 |
-13.0034 kcal/mol |
5.57631 kcal/mol |
1.09753 kcal/mol |
213 224@LB@ | |@LB@5'-GCA...ACGAC GAAGA...ACG-3'@LB@ AUGCGGCUGA@LB@ ||:|||||:|@LB@ UAUGCCGAUU@LB@3'-UUU...GCCUC GAGGU...GAA-5'@LB@ | |@LB@ 89 78@LB@@LB@@LB@Energy -6.33 kcal/mol@LB@Hybridization Energy -13.0034 kcal/mol@LB@Unfolding Energy - mRNA 5.57631 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 214 -- 223@LB@Position - sRNA 79 -- 88@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 79 -- 85@LB@ |
118 |
0.04846 |
0.3262 |
ct_515 |
rs8 |
-12.50 |
0.006183 |
13 -- 43 |
3 -- 33 |
30S ribosomal protein S8 |
|
_____________12_______________________________44\n_____________|________________________________|\n5'-GGA...GACGA___U________UU__________UG______AAAUC...UGC-3'\n______________GGA_GUUAUUCC__UGGU_UUAGA__AUCAGC\n______________:||_|:||||||__|||:_|||||__|:||:|\n______________UCU_CGAUAAGG__ACCG_AAUCU__UGGUUG\n3'-UUU...CUCAG___U________U_____C_____UA______AA-5'\n_____________|________________________________|\n_____________34_______________________________2\n |
18 -- 24 |
22 -- 28 |
-29.6343 kcal/mol |
8.5463 kcal/mol |
8.59196 kcal/mol |
12 44@LB@ | |@LB@5'-GGA...GACGA U UU UG AAAUC...UGC-3'@LB@ GGA GUUAUUCC UGGU UUAGA AUCAGC@LB@ :|| |:|||||| |||: ||||| |:||:|@LB@ UCU CGAUAAGG ACCG AAUCU UGGUUG@LB@3'-UUU...CUCAG U U C UA AA-5'@LB@ | |@LB@ 34 2@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -29.6343 kcal/mol@LB@Unfolding Energy - mRNA 8.5463 kcal/mol@LB@Unfolding Energy - sRNA 8.59196 kcal/mol@LB@@LB@Position - mRNA 13 -- 43@LB@Position - sRNA 3 -- 33@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 22 -- 28@LB@ |
12 |
0.002873 |
0.1836 |
ct_040 |
ruvB |
-8.58 |
0.062725 |
112 -- 136 |
36 -- 60 |
Holliday junction DNA helicase RuvB |
|
_____________111_______________________137\n_____________|_________________________|\n5'-CAG...GGGAA_________ACUU___C________GAUGU...AAG-3'\n______________UCCCUCUUG____CAG_CGCUGGAG\n______________||||:|:||____||:_|:||:|||\n______________AGGGGGGAC____GUU_GUGAUCUC\n3'-UUU...ACUGA_________ACAU___U________AGUCU...GAA-5'\n_____________|_________________________|\n_____________61________________________35\n |
113 -- 119 |
53 -- 59 |
-26.2752 kcal/mol |
7.75429 kcal/mol |
9.944 kcal/mol |
111 137@LB@ | |@LB@5'-CAG...GGGAA ACUU C GAUGU...AAG-3'@LB@ UCCCUCUUG CAG CGCUGGAG@LB@ ||||:|:|| ||: |:||:|||@LB@ AGGGGGGAC GUU GUGAUCUC@LB@3'-UUU...ACUGA ACAU U AGUCU...GAA-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -26.2752 kcal/mol@LB@Unfolding Energy - mRNA 7.75429 kcal/mol@LB@Unfolding Energy - sRNA 9.944 kcal/mol@LB@@LB@Position - mRNA 112 -- 136@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 53 -- 59@LB@ |
136 |
0.05474 |
0.3262 |
ct_592 |
sdhA |
-7.43 |
0.115894 |
38 -- 56 |
18 -- 34 |
succinate dehydrogenase flavoprotein subunit |
|
_____________37__________________57\n_____________|___________________|\n5'-UCU...UGUUA___CU_____UU_______GUUUA...UGU-3'\n______________UAG__GCUGU__UCCAUGG\n______________:||__|||:|__|||||||\n______________GUC__CGAUA__AGGUACC\n3'-UUU...UCUCA___UU______________GCAAU...GAA-5'\n_____________|___________________|\n_____________35__________________17\n |
50 -- 56 |
18 -- 24 |
-18.2308 kcal/mol |
5.82664 kcal/mol |
4.97803 kcal/mol |
37 57@LB@ | |@LB@5'-UCU...UGUUA CU UU GUUUA...UGU-3'@LB@ UAG GCUGU UCCAUGG@LB@ :|| |||:| |||||||@LB@ GUC CGAUA AGGUACC@LB@3'-UUU...UCUCA UU GCAAU...GAA-5'@LB@ | |@LB@ 35 17@LB@@LB@@LB@Energy -7.43 kcal/mol@LB@Hybridization Energy -18.2308 kcal/mol@LB@Unfolding Energy - mRNA 5.82664 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 38 -- 56@LB@Position - sRNA 18 -- 34@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 18 -- 24@LB@ |
37 |
0.01294 |
0.2859 |
ct_591 |
sdhB |
-7.06 |
0.139804 |
161 -- 176 |
18 -- 34 |
succinate dehydrogenase iron sulfur subunit |
|
_____________160_______________177\n_____________|_________________|\n5'-AAA...AUUUA_____________UG__AAAUA...GGG-3'\n______________UAGAGGC_GUUCC__GG\n______________:|||:||_:||||__||\n______________GUCUUCG_UAAGG__CC\n3'-UUU...UCUCA_______A_____UA__GCAAU...GAA-5'\n_____________|_________________|\n_____________35________________17\n |
161 -- 167 |
28 -- 34 |
-17.8156 kcal/mol |
5.77845 kcal/mol |
4.97803 kcal/mol |
160 177@LB@ | |@LB@5'-AAA...AUUUA UG AAAUA...GGG-3'@LB@ UAGAGGC GUUCC GG@LB@ :|||:|| :|||| ||@LB@ GUCUUCG UAAGG CC@LB@3'-UUU...UCUCA A UA GCAAU...GAA-5'@LB@ | |@LB@ 35 17@LB@@LB@@LB@Energy -7.06 kcal/mol@LB@Hybridization Energy -17.8156 kcal/mol@LB@Unfolding Energy - mRNA 5.77845 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 161 -- 176@LB@Position - sRNA 18 -- 34@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 28 -- 34@LB@ |
76 |
0.02744 |
0.29 |
ct_510 |
secY |
-5.37 |
0.309530 |
200 -- 207 |
80 -- 87 |
preprotein translocase subunit SecY |
|
_____________199______208\n_____________|________|\n5'-GAU...AAGUU________CAUUG...UCC-3'\n______________UAUGGCUA\n______________||:|||||\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
201 -- 207 |
80 -- 86 |
-9.93483 kcal/mol |
3.46443 kcal/mol |
1.09752 kcal/mol |
199 208@LB@ | |@LB@5'-GAU...AAGUU CAUUG...UCC-3'@LB@ UAUGGCUA@LB@ ||:|||||@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -5.37 kcal/mol@LB@Hybridization Energy -9.93483 kcal/mol@LB@Unfolding Energy - mRNA 3.46443 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 200 -- 207@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 80 -- 86@LB@ |
153 |
0.06453 |
0.3424 |
ct_729 |
serS |
-6.28 |
0.205305 |
1 -- 23 |
3 -- 33 |
serine--tRNA ligase |
|
______________1______________________________24\n______________|______________________________|\n___________5'-____C_G_____U__________________CCUCA...UGG-3'\n______________AGAA_C_AUUCC_UG________AUGCCAAC\n______________||||_|_|||||_||________||:|||||\n______________UCUU_G_UAAGG_AC________UAUGGUUG\n3'-UUU...CUCAG____C_A_____U__CGCAAUCU________AA-5'\n_____________|_______________________________|\n_____________34______________________________2\n |
17 -- 23 |
3 -- 9 |
-16.9997 kcal/mol |
2.1318 kcal/mol |
8.59196 kcal/mol |
1 24@LB@ | |@LB@ 5'- C G U CCUCA...UGG-3'@LB@ AGAA C AUUCC UG AUGCCAAC@LB@ |||| | ||||| || ||:|||||@LB@ UCUU G UAAGG AC UAUGGUUG@LB@3'-UUU...CUCAG C A U CGCAAUCU AA-5'@LB@ | |@LB@ 34 2@LB@@LB@@LB@Energy -6.28 kcal/mol@LB@Hybridization Energy -16.9997 kcal/mol@LB@Unfolding Energy - mRNA 2.1318 kcal/mol@LB@Unfolding Energy - sRNA 8.59196 kcal/mol@LB@@LB@Position - mRNA 1 -- 23@LB@Position - sRNA 3 -- 33@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 3 -- 9@LB@ |
169 |
0.07086 |
0.3447 |
ct_615 |
sigA |
-4.07 |
0.514760 |
248 -- 272 |
10 -- 33 |
RNA polymerase sigma factor |
|
_____________247________________________273\n_____________|__________________________|\n5'-GGU...CAAGA_____AAA_____AAGAAA_______GAGUU...AAG-3'\n______________AGAAG____UCCA______GUUAGAA\n______________|||||____||||______|||||||\n______________UCUUC____AGGU______CAAUCUU\n3'-UUU...CUCAG_____GAUA____ACCG_________AUGGU...GAA-5'\n_____________|__________________________|\n_____________34_________________________9\n |
266 -- 272 |
10 -- 16 |
-15.5151 kcal/mol |
2.85327 kcal/mol |
8.5898 kcal/mol |
247 273@LB@ | |@LB@5'-GGU...CAAGA AAA AAGAAA GAGUU...AAG-3'@LB@ AGAAG UCCA GUUAGAA@LB@ ||||| |||| |||||||@LB@ UCUUC AGGU CAAUCUU@LB@3'-UUU...CUCAG GAUA ACCG AUGGU...GAA-5'@LB@ | |@LB@ 34 9@LB@@LB@@LB@Energy -4.07 kcal/mol@LB@Hybridization Energy -15.5151 kcal/mol@LB@Unfolding Energy - mRNA 2.85327 kcal/mol@LB@Unfolding Energy - sRNA 8.5898 kcal/mol@LB@@LB@Position - mRNA 248 -- 272@LB@Position - sRNA 10 -- 33@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 10 -- 16@LB@ |