98 |
0.03528 |
0.2959 |
ct_676 |
N/A |
-6.99 |
0.144558 |
38 -- 44 |
80 -- 86 |
protein-arginine kinase activator protein |
|
_____________37______45\n_____________|_______|\n5'-GGG...GCUCA_______GAGCA...GUU-3'\n______________GCGGUUA\n______________:|||:||\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
38 -- 44 |
80 -- 86 |
-8.44953 kcal/mol |
0.39201 kcal/mol |
1.06449 kcal/mol |
37 45@LB@ | |@LB@5'-GGG...GCUCA GAGCA...GUU-3'@LB@ GCGGUUA@LB@ :|||:||@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -6.99 kcal/mol@LB@Hybridization Energy -8.44953 kcal/mol@LB@Unfolding Energy - mRNA 0.39201 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 38 -- 44@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 80 -- 86@LB@ |
100 |
0.03658 |
0.3007 |
ct_875 |
N/A |
-4.31 |
0.472369 |
272 -- 278 |
28 -- 34 |
|
|
_____________271_____279\n_____________|_______|\n5'-GGG...AAUCG_______CAAAA...AUA-3'\n______________CAGAAGU\n______________||||||:\n______________GUCUUCG\n3'-UUU...UCUCA_______AUAAG...GAA-5'\n_____________|_______|\n_____________35______27\n |
272 -- 278 |
28 -- 34 |
-8.98313 kcal/mol |
0.5541 kcal/mol |
4.11458 kcal/mol |
271 279@LB@ | |@LB@5'-GGG...AAUCG CAAAA...AUA-3'@LB@ CAGAAGU@LB@ ||||||:@LB@ GUCUUCG@LB@3'-UUU...UCUCA AUAAG...GAA-5'@LB@ | |@LB@ 35 27@LB@@LB@@LB@Energy -4.31 kcal/mol@LB@Hybridization Energy -8.98313 kcal/mol@LB@Unfolding Energy - mRNA 0.5541 kcal/mol@LB@Unfolding Energy - sRNA 4.11458 kcal/mol@LB@@LB@Position - mRNA 272 -- 278@LB@Position - sRNA 28 -- 34@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 28 -- 34@LB@ |
101 |
0.03758 |
0.3036 |
ct_457 |
N/A |
-2.86 |
0.734073 |
54 -- 60 |
80 -- 86 |
transcriptional regulator |
|
_____________53______61\n_____________|_______|\n5'-GGA...GUAAG_______GGUUA...UCU-3'\n______________AUGGUUG\n______________|:||:|:\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
54 -- 60 |
80 -- 86 |
-6.17108 kcal/mol |
2.2465 kcal/mol |
1.06449 kcal/mol |
53 61@LB@ | |@LB@5'-GGA...GUAAG GGUUA...UCU-3'@LB@ AUGGUUG@LB@ |:||:|:@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -2.86 kcal/mol@LB@Hybridization Energy -6.17108 kcal/mol@LB@Unfolding Energy - mRNA 2.2465 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 54 -- 60@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 80 -- 86@LB@ |
102 |
0.03801 |
0.3036 |
ct_001 |
N/A |
-7.82 |
0.094515 |
254 -- 277 |
28 -- 49 |
|
|
_____________253______________________278\n_____________|________________________|\n5'-CUU...GGAGC_____________AUU________AACAG...UAC-3'\n______________UAUAAACACUGGA___UUAGGAGU\n______________||:|||||||:||___|:||:||:\n______________AUGUUUGUGAUCU___AGUCUUCG\n3'-UUU...GACAC_____________C__________AUAAG...GAA-5'\n_____________|________________________|\n_____________50_______________________27\n |
271 -- 277 |
28 -- 34 |
-23.2003 kcal/mol |
3.96195 kcal/mol |
11.4222 kcal/mol |
253 278@LB@ | |@LB@5'-CUU...GGAGC AUU AACAG...UAC-3'@LB@ UAUAAACACUGGA UUAGGAGU@LB@ ||:|||||||:|| |:||:||:@LB@ AUGUUUGUGAUCU AGUCUUCG@LB@3'-UUU...GACAC C AUAAG...GAA-5'@LB@ | |@LB@ 50 27@LB@@LB@@LB@Energy -7.82 kcal/mol@LB@Hybridization Energy -23.2003 kcal/mol@LB@Unfolding Energy - mRNA 3.96195 kcal/mol@LB@Unfolding Energy - sRNA 11.4222 kcal/mol@LB@@LB@Position - mRNA 254 -- 277@LB@Position - sRNA 28 -- 49@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 28 -- 34@LB@ |
104 |
0.03845 |
0.3036 |
ct_860 |
N/A |
-5.72 |
0.265250 |
231 -- 258 |
29 -- 56 |
type III secretion system translocator CopD2 |
|
_____________230__________________________259\n_____________|____________________________|\n5'-AGU...CACUA____CAU________A___CAA______AGCAG...CCA-3'\n______________CCUU___UACAAACA_UAG___CAGGAG\n______________||:|___||||||||_|||___|||:||\n______________GGGA___AUGUUUGU_AUC___GUCUUC\n3'-UUU...AAGGG____CAC________G___UCA______GAUAA...GAA-5'\n_____________|____________________________|\n_____________57___________________________28\n |
239 -- 245 |
42 -- 48 |
-21.1219 kcal/mol |
3.33524 kcal/mol |
12.064 kcal/mol |
230 259@LB@ | |@LB@5'-AGU...CACUA CAU A CAA AGCAG...CCA-3'@LB@ CCUU UACAAACA UAG CAGGAG@LB@ ||:| |||||||| ||| |||:||@LB@ GGGA AUGUUUGU AUC GUCUUC@LB@3'-UUU...AAGGG CAC G UCA GAUAA...GAA-5'@LB@ | |@LB@ 57 28@LB@@LB@@LB@Energy -5.72 kcal/mol@LB@Hybridization Energy -21.1219 kcal/mol@LB@Unfolding Energy - mRNA 3.33524 kcal/mol@LB@Unfolding Energy - sRNA 12.064 kcal/mol@LB@@LB@Position - mRNA 231 -- 258@LB@Position - sRNA 29 -- 56@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 42 -- 48@LB@ |
105 |
0.03879 |
0.3036 |
ct_546 |
N/A |
-8.76 |
0.056849 |
221 -- 228 |
80 -- 87 |
contains leader (17) peptide |
|
_____________220______229\n_____________|________|\n5'-CGC...UUUAU________UUUUU...ACG-3'\n______________UGCGGCUA\n______________|:||||||\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
222 -- 228 |
80 -- 86 |
-12.4581 kcal/mol |
2.60487 kcal/mol |
1.09752 kcal/mol |
220 229@LB@ | |@LB@5'-CGC...UUUAU UUUUU...ACG-3'@LB@ UGCGGCUA@LB@ |:||||||@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -8.76 kcal/mol@LB@Hybridization Energy -12.4581 kcal/mol@LB@Unfolding Energy - mRNA 2.60487 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 221 -- 228@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 80 -- 86@LB@ |
107 |
0.04107 |
0.3134 |
ct_813 |
N/A |
-9.66 |
0.034154 |
135 -- 167 |
17 -- 51 |
inclusion membrane protein |
|
_____________134_________________________________168\n_____________|___________________________________|\n5'-CCA...AAAUU________AA________U___________U____CCAUC...AGG-3'\n______________UGUGCAGA___UAG_GUC_GAGGCUGUUUU_UGGU\n______________|||:||:|___|||_|||_||:|||:||::_|||:\n______________ACAUGUUU___AUC_CAG_CUUCGAUAAGG_ACCG\n3'-UUU...GGGAC________GUG___U___U___________U____CAAUC...GAA-5'\n_____________|___________________________________|\n_____________52__________________________________16\n |
155 -- 161 |
23 -- 29 |
-33.5835 kcal/mol |
11.0074 kcal/mol |
12.9166 kcal/mol |
134 168@LB@ | |@LB@5'-CCA...AAAUU AA U U CCAUC...AGG-3'@LB@ UGUGCAGA UAG GUC GAGGCUGUUUU UGGU@LB@ |||:||:| ||| ||| ||:|||:||:: |||:@LB@ ACAUGUUU AUC CAG CUUCGAUAAGG ACCG@LB@3'-UUU...GGGAC GUG U U U CAAUC...GAA-5'@LB@ | |@LB@ 52 16@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -33.5835 kcal/mol@LB@Unfolding Energy - mRNA 11.0074 kcal/mol@LB@Unfolding Energy - sRNA 12.9166 kcal/mol@LB@@LB@Position - mRNA 135 -- 167@LB@Position - sRNA 17 -- 51@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 23 -- 29@LB@ |
114 |
0.04665 |
0.3262 |
ct_848 |
N/A |
-8.83 |
0.054442 |
279 -- 286 |
79 -- 86 |
|
|
_____________278______287\n_____________|________|\n5'-CAA...CUGCA________UGAGA...CAC-3'\n______________ACGGCUGA\n______________||||||:|\n______________UGCCGAUU\n3'-UUU...CUCUA________GAGGU...GAA-5'\n_____________|________|\n_____________87_______78\n |
280 -- 286 |
79 -- 85 |
-11.4013 kcal/mol |
1.46996 kcal/mol |
1.09752 kcal/mol |
278 287@LB@ | |@LB@5'-CAA...CUGCA UGAGA...CAC-3'@LB@ ACGGCUGA@LB@ ||||||:|@LB@ UGCCGAUU@LB@3'-UUU...CUCUA GAGGU...GAA-5'@LB@ | |@LB@ 87 78@LB@@LB@@LB@Energy -8.83 kcal/mol@LB@Hybridization Energy -11.4013 kcal/mol@LB@Unfolding Energy - mRNA 1.46996 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 279 -- 286@LB@Position - sRNA 79 -- 86@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 79 -- 85@LB@ |
122 |
0.04895 |
0.3262 |
ct_683 |
N/A |
-8.21 |
0.076506 |
46 -- 53 |
80 -- 87 |
|
|
_____________45_______54\n_____________|________|\n5'-AAG...GUACU________GGAGA...AAG-3'\n______________UACGGCUA\n______________||||||||\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
47 -- 53 |
80 -- 86 |
-12.375 kcal/mol |
3.06531 kcal/mol |
1.09752 kcal/mol |
45 54@LB@ | |@LB@5'-AAG...GUACU GGAGA...AAG-3'@LB@ UACGGCUA@LB@ ||||||||@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -8.21 kcal/mol@LB@Hybridization Energy -12.375 kcal/mol@LB@Unfolding Energy - mRNA 3.06531 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 46 -- 53@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 80 -- 86@LB@ |
126 |
0.05087 |
0.3262 |
ct_474 |
N/A |
-6.92 |
0.149609 |
150 -- 156 |
15 -- 21 |
|
|
_____________149_____157\n_____________|_______|\n5'-AAA...ACGAA_______GUAUA...UAU-3'\n______________GUGGCGU\n______________:||||||\n______________UACCGCA\n3'-UUU...UAAGG_______AUCUU...GAA-5'\n_____________|_______|\n_____________22______14\n |
150 -- 156 |
15 -- 21 |
-10.3963 kcal/mol |
2.28336 kcal/mol |
1.18845 kcal/mol |
149 157@LB@ | |@LB@5'-AAA...ACGAA GUAUA...UAU-3'@LB@ GUGGCGU@LB@ :||||||@LB@ UACCGCA@LB@3'-UUU...UAAGG AUCUU...GAA-5'@LB@ | |@LB@ 22 14@LB@@LB@@LB@Energy -6.92 kcal/mol@LB@Hybridization Energy -10.3963 kcal/mol@LB@Unfolding Energy - mRNA 2.28336 kcal/mol@LB@Unfolding Energy - sRNA 1.18845 kcal/mol@LB@@LB@Position - mRNA 150 -- 156@LB@Position - sRNA 15 -- 21@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 15 -- 21@LB@ |