18 |
0.004135 |
0.1836 |
ct_799 |
N/A |
-8.26 |
0.074627 |
30 -- 52 |
17 -- 35 |
50S ribosomal protein L25/general stress protein Ctc |
|
_____________29______________________53\n_____________|_______________________|\n5'-AUC...AAUAA_________GCAA__A_______AGACG...GAA-3'\n______________UCAGAGGCU____GU_CCAUGGU\n______________|||||:|||____:|_||||||:\n______________AGUCUUCGA____UA_GGUACCG\n3'-UUU...AUCUC_______________A_______CAAUC...GAA-5'\n_____________|_______________________|\n_____________36______________________16\n |
46 -- 52 |
17 -- 23 |
-22.1109 kcal/mol |
8.8748 kcal/mol |
4.9781 kcal/mol |
29 53@LB@ | |@LB@5'-AUC...AAUAA GCAA A AGACG...GAA-3'@LB@ UCAGAGGCU GU CCAUGGU@LB@ |||||:||| :| ||||||:@LB@ AGUCUUCGA UA GGUACCG@LB@3'-UUU...AUCUC A CAAUC...GAA-5'@LB@ | |@LB@ 36 16@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -22.1109 kcal/mol@LB@Unfolding Energy - mRNA 8.8748 kcal/mol@LB@Unfolding Energy - sRNA 4.9781 kcal/mol@LB@@LB@Position - mRNA 30 -- 52@LB@Position - sRNA 17 -- 35@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 17 -- 23@LB@ |
23 |
0.006311 |
0.2093 |
ct_671 |
N/A |
-7.19 |
0.130787 |
265 -- 279 |
17 -- 34 |
|
|
_____________264_________________280\n_____________|___________________|\n5'-CAA...ACGUA________________A__CUAGA...UCC-3'\n______________CAGAGGCU____CAUG_GC\n______________||||:|||____||||_||\n______________GUCUUCGA____GUAC_CG\n3'-UUU...UCUCA________UAAG_______CAAUC...GAA-5'\n_____________|___________________|\n_____________35__________________16\n |
266 -- 272 |
27 -- 33 |
-15.8996 kcal/mol |
3.73088 kcal/mol |
4.97809 kcal/mol |
264 280@LB@ | |@LB@5'-CAA...ACGUA A CUAGA...UCC-3'@LB@ CAGAGGCU CAUG GC@LB@ ||||:||| |||| ||@LB@ GUCUUCGA GUAC CG@LB@3'-UUU...UCUCA UAAG CAAUC...GAA-5'@LB@ | |@LB@ 35 16@LB@@LB@@LB@Energy -7.19 kcal/mol@LB@Hybridization Energy -15.8996 kcal/mol@LB@Unfolding Energy - mRNA 3.73088 kcal/mol@LB@Unfolding Energy - sRNA 4.97809 kcal/mol@LB@@LB@Position - mRNA 265 -- 279@LB@Position - sRNA 17 -- 34@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 27 -- 33@LB@ |
25 |
0.00654 |
0.2093 |
ct_672 |
N/A |
-9.75 |
0.032384 |
176 -- 205 |
17 -- 33 |
type III secretion system protein |
|
_____________175____________________________206\n_____________|______________________________|\n5'-AUC...GUAGA_______CAUAUAUAAGGU___C_______AGUUG...CUG-3'\n______________AGAAGCU____________AUU_CCAUGGC\n______________|||||||____________|||_|||||||\n______________UCUUCGA____________UAA_GGUACCG\n3'-UUU...CUCAG______________________________CAAUC...GAA-5'\n_____________|______________________________|\n_____________34_____________________________16\n |
199 -- 205 |
17 -- 23 |
-19.3096 kcal/mol |
4.57941 kcal/mol |
4.97804 kcal/mol |
175 206@LB@ | |@LB@5'-AUC...GUAGA CAUAUAUAAGGU C AGUUG...CUG-3'@LB@ AGAAGCU AUU CCAUGGC@LB@ ||||||| ||| |||||||@LB@ UCUUCGA UAA GGUACCG@LB@3'-UUU...CUCAG CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -19.3096 kcal/mol@LB@Unfolding Energy - mRNA 4.57941 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 176 -- 205@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 17 -- 23@LB@ |
31 |
0.009434 |
0.2502 |
ct_824 |
N/A |
-6.02 |
0.231369 |
20 -- 32 |
21 -- 33 |
Zn-dependent peptidase |
|
_____________19____________33\n_____________|_____________|\n5'-GUC...UUUUA________G____GUAUG...CCG-3'\n______________GGAAGCUA_UCUA\n______________:|||||||_||:|\n______________UCUUCGAU_AGGU\n3'-UUU...CUCAG________A____ACCGC...GAA-5'\n_____________|_____________|\n_____________34____________20\n |
21 -- 27 |
26 -- 32 |
-13.8347 kcal/mol |
3.08274 kcal/mol |
4.73034 kcal/mol |
19 33@LB@ | |@LB@5'-GUC...UUUUA G GUAUG...CCG-3'@LB@ GGAAGCUA UCUA@LB@ :||||||| ||:|@LB@ UCUUCGAU AGGU@LB@3'-UUU...CUCAG A ACCGC...GAA-5'@LB@ | |@LB@ 34 20@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -13.8347 kcal/mol@LB@Unfolding Energy - mRNA 3.08274 kcal/mol@LB@Unfolding Energy - sRNA 4.73034 kcal/mol@LB@@LB@Position - mRNA 20 -- 32@LB@Position - sRNA 21 -- 33@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 26 -- 32@LB@ |
33 |
0.01042 |
0.2518 |
ct_780 |
N/A |
-7.85 |
0.092931 |
30 -- 50 |
15 -- 34 |
|
|
_____________29____________________51\n_____________|_____________________|\n5'-UGU...AAAAA___C____GAA_G________GUCAA...UCA-3'\n______________CAG_AAGU___U_CAUGGCGU\n______________|||_|||:___|_||||||||\n______________GUC_UUCG___A_GUACCGCA\n3'-UUU...UCUCA________AUA_G________AUCUU...GAA-5'\n_____________|_____________________|\n_____________35____________________14\n |
44 -- 50 |
15 -- 21 |
-20.7959 kcal/mol |
4.71518 kcal/mol |
8.23265 kcal/mol |
29 51@LB@ | |@LB@5'-UGU...AAAAA C GAA G GUCAA...UCA-3'@LB@ CAG AAGU U CAUGGCGU@LB@ ||| |||: | ||||||||@LB@ GUC UUCG A GUACCGCA@LB@3'-UUU...UCUCA AUA G AUCUU...GAA-5'@LB@ | |@LB@ 35 14@LB@@LB@@LB@Energy -7.85 kcal/mol@LB@Hybridization Energy -20.7959 kcal/mol@LB@Unfolding Energy - mRNA 4.71518 kcal/mol@LB@Unfolding Energy - sRNA 8.23265 kcal/mol@LB@@LB@Position - mRNA 30 -- 50@LB@Position - sRNA 15 -- 34@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 15 -- 21@LB@ |
34 |
0.01043 |
0.2518 |
ct_642 |
N/A |
-9.37 |
0.040224 |
239 -- 246 |
53 -- 60 |
|
|
_____________238______247\n_____________|________|\n5'-AGG...UCUUC________CUUCG...CUG-3'\n______________UCCCCCCU\n______________||||||||\n______________AGGGGGGA\n3'-UUU...ACUGA________CACAU...GAA-5'\n_____________|________|\n_____________61_______52\n |
240 -- 246 |
53 -- 59 |
-15.9954 kcal/mol |
0.170944 kcal/mol |
6.45136 kcal/mol |
238 247@LB@ | |@LB@5'-AGG...UCUUC CUUCG...CUG-3'@LB@ UCCCCCCU@LB@ ||||||||@LB@ AGGGGGGA@LB@3'-UUU...ACUGA CACAU...GAA-5'@LB@ | |@LB@ 61 52@LB@@LB@@LB@Energy -9.37 kcal/mol@LB@Hybridization Energy -15.9954 kcal/mol@LB@Unfolding Energy - mRNA 0.170944 kcal/mol@LB@Unfolding Energy - sRNA 6.45136 kcal/mol@LB@@LB@Position - mRNA 239 -- 246@LB@Position - sRNA 53 -- 60@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 53 -- 59@LB@ |
35 |
0.01072 |
0.2518 |
ct_483 |
N/A |
-8.14 |
0.079674 |
97 -- 146 |
5 -- 57 |
|
|
_____________96______________________________________________________147\n_____________|_______________________________________________________|\n5'-UAG...GUCUU____GAC_______G_GAAAU_____UC____________AAAAAAA________AGGUA...GCG-3'\n______________CUCC____UACAGA_A_____GAGUC_____CUAUUCCAU________AAUACCA\n______________|:||____||||:|_|_____|||||_____|||||||||________|||||||\n______________GGGG____AUGUUU_U_____CUCAG_____GAUAAGGUA________UUAUGGU\n3'-UUU...GAAGG____ACAC______G_GAU_______UCUUC_________CCGCAAUC_______UGAA-5'\n_____________|_______________________________________________________|\n_____________58______________________________________________________4\n |
140 -- 146 |
5 -- 11 |
-33.404 kcal/mol |
8.71732 kcal/mol |
16.5501 kcal/mol |
96 147@LB@ | |@LB@5'-UAG...GUCUU GAC G GAAAU UC AAAAAAA AGGUA...GCG-3'@LB@ CUCC UACAGA A GAGUC CUAUUCCAU AAUACCA@LB@ |:|| ||||:| | ||||| ||||||||| |||||||@LB@ GGGG AUGUUU U CUCAG GAUAAGGUA UUAUGGU@LB@3'-UUU...GAAGG ACAC G GAU UCUUC CCGCAAUC UGAA-5'@LB@ | |@LB@ 58 4@LB@@LB@@LB@Energy -8.14 kcal/mol@LB@Hybridization Energy -33.404 kcal/mol@LB@Unfolding Energy - mRNA 8.71732 kcal/mol@LB@Unfolding Energy - sRNA 16.5501 kcal/mol@LB@@LB@Position - mRNA 97 -- 146@LB@Position - sRNA 5 -- 57@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 5 -- 11@LB@ |
40 |
0.01393 |
0.2859 |
ct_695 |
N/A |
-4.73 |
0.403172 |
160 -- 166 |
82 -- 88 |
|
|
_____________159_____167\n_____________|_______|\n5'-AUU...AAGGU_______GUUCG...AGG-3'\n______________AUGCGGU\n______________||:|||:\n______________UAUGCCG\n3'-UUU...GCCUC_______AUUGA...GAA-5'\n_____________|_______|\n_____________89______81\n |
160 -- 166 |
82 -- 88 |
-8.16543 kcal/mol |
2.33498 kcal/mol |
1.09753 kcal/mol |
159 167@LB@ | |@LB@5'-AUU...AAGGU GUUCG...AGG-3'@LB@ AUGCGGU@LB@ ||:|||:@LB@ UAUGCCG@LB@3'-UUU...GCCUC AUUGA...GAA-5'@LB@ | |@LB@ 89 81@LB@@LB@@LB@Energy -4.73 kcal/mol@LB@Hybridization Energy -8.16543 kcal/mol@LB@Unfolding Energy - mRNA 2.33498 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 160 -- 166@LB@Position - sRNA 82 -- 88@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 82 -- 88@LB@ |
42 |
0.01617 |
0.29 |
ct_610 |
N/A |
-8.69 |
0.058803 |
15 -- 22 |
80 -- 87 |
virulence protein CADD |
|
_____________14_______23\n_____________|________|\n5'-GAU...GCAGU________UUGUU...GGG-3'\n______________UGCGGCUG\n______________|:|||||:\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
16 -- 22 |
80 -- 86 |
-11.8172 kcal/mol |
2.02516 kcal/mol |
1.09752 kcal/mol |
14 23@LB@ | |@LB@5'-GAU...GCAGU UUGUU...GGG-3'@LB@ UGCGGCUG@LB@ |:|||||:@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -8.69 kcal/mol@LB@Hybridization Energy -11.8172 kcal/mol@LB@Unfolding Energy - mRNA 2.02516 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 15 -- 22@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 80 -- 86@LB@ |
43 |
0.01649 |
0.29 |
ct_590 |
N/A |
-9.68 |
0.033714 |
159 -- 170 |
17 -- 28 |
|
|
_____________158__________171\n_____________|____________|\n5'-AGU...CAAUU____________AAAGG...UCA-3'\n______________UUAUUCCAUGGU\n______________:||||||||||:\n______________GAUAAGGUACCG\n3'-UUU...UCUUC____________CAAUC...GAA-5'\n_____________|____________|\n_____________29___________16\n |
164 -- 170 |
17 -- 23 |
-16.2126 kcal/mol |
1.90936 kcal/mol |
4.62088 kcal/mol |
158 171@LB@ | |@LB@5'-AGU...CAAUU AAAGG...UCA-3'@LB@ UUAUUCCAUGGU@LB@ :||||||||||:@LB@ GAUAAGGUACCG@LB@3'-UUU...UCUUC CAAUC...GAA-5'@LB@ | |@LB@ 29 16@LB@@LB@@LB@Energy -9.68 kcal/mol@LB@Hybridization Energy -16.2126 kcal/mol@LB@Unfolding Energy - mRNA 1.90936 kcal/mol@LB@Unfolding Energy - sRNA 4.62088 kcal/mol@LB@@LB@Position - mRNA 159 -- 170@LB@Position - sRNA 17 -- 28@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 17 -- 23@LB@ |