| 90 |
0.002979 |
0.1113 |
b3328 |
gspG |
-12.13 |
0.061461 |
284 -- 293 |
37 -- 46 |
pseudopilin cryptic general secretion pathway |
|
_____________283________294\n_____________|__________|\n5'-AAA...AGCCU__________AACCUAA-3'\n______________GGUGGUUCCU\n______________||||||||||\n______________CCACCAAGGA\n3'-UUU...UUCCU__________CCAUG...UCG-5'\n_____________|__________|\n_____________47_________36\n |
287 -- 293 |
37 -- 43 |
-18.4741 kcal/mol |
3.21142 kcal/mol |
3.13317 kcal/mol |
283 294@LB@ | |@LB@5'-AAA...AGCCU AACCUAA-3'@LB@ GGUGGUUCCU@LB@ ||||||||||@LB@ CCACCAAGGA@LB@3'-UUU...UUCCU CCAUG...UCG-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -18.4741 kcal/mol@LB@Unfolding Energy - mRNA 3.21142 kcal/mol@LB@Unfolding Energy - sRNA 3.13317 kcal/mol@LB@@LB@Position - mRNA 284 -- 293@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 181 |
0.0104 |
0.1919 |
b2106 |
rcnA |
-12.10 |
0.062308 |
133 -- 155 |
15 -- 50 |
membrane protein conferring nickel and cobalt resistance |
|
_____________132__________________________________156\n_____________|____________________________________|\n5'-UUC...CUACU_______A__A__A______________________GGGGA...ACU-3'\n______________GGGGGGU_GU_UC_GGUAC_____________UGGG\n______________:||:|||_||_:|_|||||_____________||||\n______________UCCUCCA_CA_GG_CCAUG_____________ACCC\n3'-UUU...CCGAU_______C__A__A_____UCGAUCGUAAAAU____AAUAC...UCG-5'\n_____________|____________________________________|\n_____________51___________________________________14\n |
133 -- 139 |
44 -- 50 |
-22.0891 kcal/mol |
5.35824 kcal/mol |
4.62773 kcal/mol |
132 156@LB@ | |@LB@5'-UUC...CUACU A A A GGGGA...ACU-3'@LB@ GGGGGGU GU UC GGUAC UGGG@LB@ :||:||| || :| ||||| ||||@LB@ UCCUCCA CA GG CCAUG ACCC@LB@3'-UUU...CCGAU C A A UCGAUCGUAAAAU AAUAC...UCG-5'@LB@ | |@LB@ 51 14@LB@@LB@@LB@Energy -12.10 kcal/mol@LB@Hybridization Energy -22.0891 kcal/mol@LB@Unfolding Energy - mRNA 5.35824 kcal/mol@LB@Unfolding Energy - sRNA 4.62773 kcal/mol@LB@@LB@Position - mRNA 133 -- 155@LB@Position - sRNA 15 -- 50@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 66 |
0.001771 |
0.09017 |
b0924 |
mukB |
-12.08 |
0.063147 |
4 -- 24 |
1 -- 22 |
chromosome condensin MukBEF ATPase and DNA-binding subunit |
|
_____________3______________________25\n_____________|______________________|\n________5'-UGG________CCACGACAG_____AAGUU...CUG-3'\n______________UUUAUGGG__________CAGC\n______________||||||||__________||||\n______________AAAUACCC__________GUCG\n3'-UUU...UCGUA________AAUACAAAAA____-5'\n_____________|_____________________|\n_____________23____________________1\n |
5 -- 11 |
15 -- 21 |
-14.8798 kcal/mol |
1.84387 kcal/mol |
0.958674 kcal/mol |
3 25@LB@ | |@LB@ 5'-UGG CCACGACAG AAGUU...CUG-3'@LB@ UUUAUGGG CAGC@LB@ |||||||| ||||@LB@ AAAUACCC GUCG@LB@3'-UUU...UCGUA AAUACAAAAA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -14.8798 kcal/mol@LB@Unfolding Energy - mRNA 1.84387 kcal/mol@LB@Unfolding Energy - sRNA 0.958674 kcal/mol@LB@@LB@Position - mRNA 4 -- 24@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 100 |
0.003656 |
0.1229 |
b2287 |
nuoB |
-12.04 |
0.064387 |
31 -- 70 |
8 -- 47 |
NADH:ubiquinone oxidoreductase chain B |
|
_____________30___________________________________________71\n_____________|____________________________________________|\n5'-CAU...CGGCU____A__C___G___A__________AU______UU________ACUGG...UUA-3'\n______________GGGU_GG_UUU_UGG___AGCU_GCA__UUUUAU___UUGUGUU\n______________:|||_||_||:_|||___||||_|||__||||||___||:||||\n______________UCCA_CC_AAG_ACC___UCGA_CGU__AAAAUA___AAUACAA\n3'-UUU...AUUCC___________G___AUG____U___________CCC_______AAAGUCG-5'\n_____________|____________________________________________|\n_____________48___________________________________________7\n |
64 -- 70 |
8 -- 14 |
-25.7516 kcal/mol |
9.10307 kcal/mol |
4.60908 kcal/mol |
30 71@LB@ | |@LB@5'-CAU...CGGCU A C G A AU UU ACUGG...UUA-3'@LB@ GGGU GG UUU UGG AGCU GCA UUUUAU UUGUGUU@LB@ :||| || ||: ||| |||| ||| |||||| ||:||||@LB@ UCCA CC AAG ACC UCGA CGU AAAAUA AAUACAA@LB@3'-UUU...AUUCC G AUG U CCC AAAGUCG-5'@LB@ | |@LB@ 48 7@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -25.7516 kcal/mol@LB@Unfolding Energy - mRNA 9.10307 kcal/mol@LB@Unfolding Energy - sRNA 4.60908 kcal/mol@LB@@LB@Position - mRNA 31 -- 70@LB@Position - sRNA 8 -- 47@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 142 |
0.006672 |
0.1579 |
b3168 |
infB |
-12.04 |
0.064271 |
249 -- 267 |
29 -- 45 |
translation initiation factor IF-2 |
|
_____________248_________________268\n_____________|___________________|\n5'-AAG...CCUCC____AACG___________AAUUU...CUG-3'\n______________GUGG____CCUGGUACAGC\n______________||||____|||||||||||\n______________CACC____GGACCAUGUCG\n3'-UUU...UCCUC____AA_____________AUCGU...UCG-5'\n_____________|___________________|\n_____________46__________________28\n |
261 -- 267 |
29 -- 35 |
-27.2517 kcal/mol |
10.9083 kcal/mol |
4.30037 kcal/mol |
248 268@LB@ | |@LB@5'-AAG...CCUCC AACG AAUUU...CUG-3'@LB@ GUGG CCUGGUACAGC@LB@ |||| |||||||||||@LB@ CACC GGACCAUGUCG@LB@3'-UUU...UCCUC AA AUCGU...UCG-5'@LB@ | |@LB@ 46 28@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -27.2517 kcal/mol@LB@Unfolding Energy - mRNA 10.9083 kcal/mol@LB@Unfolding Energy - sRNA 4.30037 kcal/mol@LB@@LB@Position - mRNA 249 -- 267@LB@Position - sRNA 29 -- 45@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 55 |
0.001331 |
0.08097 |
b2742 |
nlpD |
-12.02 |
0.064935 |
253 -- 272 |
24 -- 44 |
activator of AmiC murein hydrolase activity lipoprotein |
|
_____________252___________________273\n_____________|_____________________|\n5'-UAU...GUCAC_______GC____________GGCUG...CGG-3'\n______________UGGUUUC___UAUGGCUGGCA\n______________|||||:|___||::|||:|||\n______________ACCAAGG___AUGUCGAUCGU\n3'-UUU...CCUCC_______ACC___________AAAAU...UCG-5'\n_____________|_____________________|\n_____________45____________________23\n |
266 -- 272 |
24 -- 30 |
-23.7485 kcal/mol |
7.16759 kcal/mol |
4.55788 kcal/mol |
252 273@LB@ | |@LB@5'-UAU...GUCAC GC GGCUG...CGG-3'@LB@ UGGUUUC UAUGGCUGGCA@LB@ |||||:| ||::|||:|||@LB@ ACCAAGG AUGUCGAUCGU@LB@3'-UUU...CCUCC ACC AAAAU...UCG-5'@LB@ | |@LB@ 45 23@LB@@LB@@LB@Energy -12.02 kcal/mol@LB@Hybridization Energy -23.7485 kcal/mol@LB@Unfolding Energy - mRNA 7.16759 kcal/mol@LB@Unfolding Energy - sRNA 4.55788 kcal/mol@LB@@LB@Position - mRNA 253 -- 272@LB@Position - sRNA 24 -- 44@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 64 |
0.001739 |
0.09016 |
b4463 |
ygcU |
-11.99 |
0.066010 |
140 -- 150 |
36 -- 46 |
putative FAD-linked oxidoreductase |
|
_____________139_________151\n_____________|___________|\n5'-AUC...AUAAC___________UUUUC...UUG-3'\n______________GGUGGUUUCUG\n______________|||||||:|||\n______________CCACCAAGGAC\n3'-UUU...UUCCU___________CAUGU...UCG-5'\n_____________|___________|\n_____________47__________35\n |
144 -- 150 |
36 -- 42 |
-19.2157 kcal/mol |
4.08908 kcal/mol |
3.13564 kcal/mol |
139 151@LB@ | |@LB@5'-AUC...AUAAC UUUUC...UUG-3'@LB@ GGUGGUUUCUG@LB@ |||||||:|||@LB@ CCACCAAGGAC@LB@3'-UUU...UUCCU CAUGU...UCG-5'@LB@ | |@LB@ 47 35@LB@@LB@@LB@Energy -11.99 kcal/mol@LB@Hybridization Energy -19.2157 kcal/mol@LB@Unfolding Energy - mRNA 4.08908 kcal/mol@LB@Unfolding Energy - sRNA 3.13564 kcal/mol@LB@@LB@Position - mRNA 140 -- 150@LB@Position - sRNA 36 -- 46@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 199 |
0.0118 |
0.1975 |
b0077 |
ilvI |
-11.98 |
0.066447 |
6 -- 27 |
1 -- 30 |
acetolactate synthase 3 large subunit |
|
_____________5______________________________28\n_____________|______________________________|\n______5'-AAAUU_______AG_______A_____________CGAUU...UUU-3'\n______________GCU_GUA__UUGUGGG________UUCAGC\n______________|||_|:|__||:||||________||||||\n______________CGA_CGU__AAUACCC________AAGUCG\n3'-UUU...CAUGU___U___AA_______AAUACAAA______-5'\n_____________|_____________________________|\n_____________31____________________________1\n |
14 -- 20 |
15 -- 21 |
-19.3299 kcal/mol |
5.86615 kcal/mol |
1.48556 kcal/mol |
5 28@LB@ | |@LB@ 5'-AAAUU AG A CGAUU...UUU-3'@LB@ GCU GUA UUGUGGG UUCAGC@LB@ ||| |:| ||:|||| ||||||@LB@ CGA CGU AAUACCC AAGUCG@LB@3'-UUU...CAUGU U AA AAUACAAA -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -19.3299 kcal/mol@LB@Unfolding Energy - mRNA 5.86615 kcal/mol@LB@Unfolding Energy - sRNA 1.48556 kcal/mol@LB@@LB@Position - mRNA 6 -- 27@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 122 |
0.005134 |
0.1413 |
b0437 |
clpP |
-11.97 |
0.066798 |
162 -- 180 |
3 -- 36 |
proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases |
|
_____________161________________________________181\n_____________|__________________________________|\n5'-CCA...CAAUC________A_________________________AUUUU...UCU-3'\n______________GGUACAGC_GGU_______________UUUUUCA\n______________||||||||_:|:_______________|||||||\n______________CCAUGUCG_UCG_______________AAAAAGU\n3'-UUU...AAGGA________A___UAAAAUACCCAAUAC_______CG-5'\n_____________|__________________________________|\n_____________37_________________________________2\n |
174 -- 180 |
3 -- 9 |
-16.9285 kcal/mol |
3.46571 kcal/mol |
1.49503 kcal/mol |
161 181@LB@ | |@LB@5'-CCA...CAAUC A AUUUU...UCU-3'@LB@ GGUACAGC GGU UUUUUCA@LB@ |||||||| :|: |||||||@LB@ CCAUGUCG UCG AAAAAGU@LB@3'-UUU...AAGGA A UAAAAUACCCAAUAC CG-5'@LB@ | |@LB@ 37 2@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -16.9285 kcal/mol@LB@Unfolding Energy - mRNA 3.46571 kcal/mol@LB@Unfolding Energy - sRNA 1.49503 kcal/mol@LB@@LB@Position - mRNA 162 -- 180@LB@Position - sRNA 3 -- 36@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 161 |
0.008114 |
0.1694 |
b3656 |
yicI |
-11.96 |
0.067144 |
124 -- 143 |
14 -- 37 |
putative alpha-glucosidase |
b3878 |
_____________123______________________144\n_____________|________________________|\n5'-ACA...CGUUA___A_________UCA________AAACG...UGG-3'\n______________UGG_ACAGCUGGC_______GGGU\n______________|||_||||||:||_______||||\n______________ACC_UGUCGAUCG_______CCCA\n3'-UUU...CAAGG___A_________UAAAAUA____AUACA...UCG-5'\n_____________|________________________|\n_____________38_______________________13\n |
130 -- 136 |
25 -- 31 |
-23.0355 kcal/mol |
8.41802 kcal/mol |
2.65978 kcal/mol |
123 144@LB@ | |@LB@5'-ACA...CGUUA A UCA AAACG...UGG-3'@LB@ UGG ACAGCUGGC GGGU@LB@ ||| ||||||:|| ||||@LB@ ACC UGUCGAUCG CCCA@LB@3'-UUU...CAAGG A UAAAAUA AUACA...UCG-5'@LB@ | |@LB@ 38 13@LB@@LB@@LB@Energy -11.96 kcal/mol@LB@Hybridization Energy -23.0355 kcal/mol@LB@Unfolding Energy - mRNA 8.41802 kcal/mol@LB@Unfolding Energy - sRNA 2.65978 kcal/mol@LB@@LB@Position - mRNA 124 -- 143@LB@Position - sRNA 14 -- 37@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 25 -- 31@LB@ |
