| 79 |
0.002261 |
0.09621 |
b2556 |
glrK |
-15.72 |
0.006745 |
240 -- 258 |
20 -- 38 |
sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR |
|
_____________239_________________259\n_____________|___________________|\n5'-CUA...GACAA______AU___________UGCUG...CCU-3'\n______________CUGGUA__GCUGGCAUUUU\n______________||||||__|||:|||||||\n______________GACCAU__CGAUCGUAAAA\n3'-UUU...CCAAG______GU___________UACCC...UCG-5'\n_____________|___________________|\n_____________39__________________19\n |
252 -- 258 |
20 -- 26 |
-25.6316 kcal/mol |
5.4283 kcal/mol |
4.48821 kcal/mol |
239 259@LB@ | |@LB@5'-CUA...GACAA AU UGCUG...CCU-3'@LB@ CUGGUA GCUGGCAUUUU@LB@ |||||| |||:|||||||@LB@ GACCAU CGAUCGUAAAA@LB@3'-UUU...CCAAG GU UACCC...UCG-5'@LB@ | |@LB@ 39 19@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -25.6316 kcal/mol@LB@Unfolding Energy - mRNA 5.4283 kcal/mol@LB@Unfolding Energy - sRNA 4.48821 kcal/mol@LB@@LB@Position - mRNA 240 -- 258@LB@Position - sRNA 20 -- 38@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 26 |
0.0003609 |
0.04652 |
b0197 |
metQ |
-15.58 |
0.007466 |
80 -- 120 |
1 -- 43 |
DL-methionine transporter subunit |
|
_____________79___________________________________________121\n_____________|____________________________________________|\n5'-GUG...AAUAC___A________U_____U____C_____U____UUAA______UCGCA...UUA-3'\n______________GGU__CUGGUAU_GCUGG_CAUU___UGG_UUAU____UUCAGU\n______________|||__||||||:_|||:|_||||___|||_||||____|||||:\n______________CCA__GACCAUG_CGAUC_GUAA___ACC_AAUA____AAGUCG\n3'-UUU...CUCCA___AG_______U__________AAU___C____CAAA______-5'\n_____________|___________________________________________|\n_____________44__________________________________________1\n |
84 -- 90 |
32 -- 38 |
-33.3889 kcal/mol |
13.205 kcal/mol |
4.6088 kcal/mol |
79 121@LB@ | |@LB@5'-GUG...AAUAC A U U C U UUAA UCGCA...UUA-3'@LB@ GGU CUGGUAU GCUGG CAUU UGG UUAU UUCAGU@LB@ ||| ||||||: |||:| |||| ||| |||| |||||:@LB@ CCA GACCAUG CGAUC GUAA ACC AAUA AAGUCG@LB@3'-UUU...CUCCA AG U AAU C CAAA -5'@LB@ | |@LB@ 44 1@LB@@LB@@LB@Energy -15.58 kcal/mol@LB@Hybridization Energy -33.3889 kcal/mol@LB@Unfolding Energy - mRNA 13.205 kcal/mol@LB@Unfolding Energy - sRNA 4.6088 kcal/mol@LB@@LB@Position - mRNA 80 -- 120@LB@Position - sRNA 1 -- 43@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 143 |
0.00681 |
0.158 |
b2418 |
pdxK |
-15.34 |
0.008827 |
271 -- 292 |
15 -- 47 |
pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase |
|
_____________270_______________________________293\n_____________|_________________________________|\n5'-CAU...GUCGC_________________________________CAACAGCA-3'\n______________AGGUGGUUU_____ACGGC_AGC_____GUGGG\n______________||||||||:_____||:||_|||_____:||||\n______________UCCACCAAG_____UGUCG_UCG_____UACCC\n3'-UUU...AUUCC_________GACCA_____A___UAAAA_____AAUAC...UCG-5'\n_____________|_________________________________|\n_____________48________________________________14\n |
273 -- 279 |
39 -- 45 |
-26.4553 kcal/mol |
6.54205 kcal/mol |
4.57348 kcal/mol |
270 293@LB@ | |@LB@5'-CAU...GUCGC CAACAGCA-3'@LB@ AGGUGGUUU ACGGC AGC GUGGG@LB@ ||||||||: ||:|| ||| :||||@LB@ UCCACCAAG UGUCG UCG UACCC@LB@3'-UUU...AUUCC GACCA A UAAAA AAUAC...UCG-5'@LB@ | |@LB@ 48 14@LB@@LB@@LB@Energy -15.34 kcal/mol@LB@Hybridization Energy -26.4553 kcal/mol@LB@Unfolding Energy - mRNA 6.54205 kcal/mol@LB@Unfolding Energy - sRNA 4.57348 kcal/mol@LB@@LB@Position - mRNA 271 -- 292@LB@Position - sRNA 15 -- 47@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 9 |
2.519e-05 |
0.009407 |
b0435 |
bolA |
-15.32 |
0.008970 |
138 -- 163 |
15 -- 36 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________137________________________164\n_____________|__________________________|\n5'-UGA...GAAAC___AAAA_____________AAA___AUGGA...CCG-3'\n______________GGU____GCGGCUAGUAUUU___GGG\n______________|||____:|:|||||:||||___|||\n______________CCA____UGUCGAUCGUAAA___CCC\n3'-UUU...AAGGA____________________AUA___AAUAC...UCG-5'\n_____________|__________________________|\n_____________37_________________________14\n |
151 -- 157 |
21 -- 27 |
-22.9811 kcal/mol |
6.21269 kcal/mol |
1.45166 kcal/mol |
137 164@LB@ | |@LB@5'-UGA...GAAAC AAAA AAA AUGGA...CCG-3'@LB@ GGU GCGGCUAGUAUUU GGG@LB@ ||| :|:|||||:|||| |||@LB@ CCA UGUCGAUCGUAAA CCC@LB@3'-UUU...AAGGA AUA AAUAC...UCG-5'@LB@ | |@LB@ 37 14@LB@@LB@@LB@Energy -15.32 kcal/mol@LB@Hybridization Energy -22.9811 kcal/mol@LB@Unfolding Energy - mRNA 6.21269 kcal/mol@LB@Unfolding Energy - sRNA 1.45166 kcal/mol@LB@@LB@Position - mRNA 138 -- 163@LB@Position - sRNA 15 -- 36@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 118 |
0.00496 |
0.1407 |
b1128 |
roxA |
-15.27 |
0.009267 |
80 -- 105 |
22 -- 49 |
50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase |
|
_____________79___________________________106\n_____________|____________________________|\n5'-UGG...CGGAU_______A_____________C______CUGCG...ACC-3'\n______________GGAGGUG_UUUUUGGU_C_GC_AGCAUU\n______________|||||||_||::||||_|_||_||||||\n______________CCUCCAC_AAGGACCA_G_CG_UCGUAA\n3'-UUU...CGAUU_______C________U_U__A______AAUAC...UCG-5'\n_____________|____________________________|\n_____________50___________________________21\n |
80 -- 86 |
43 -- 49 |
-30.554 kcal/mol |
10.7239 kcal/mol |
4.55979 kcal/mol |
79 106@LB@ | |@LB@5'-UGG...CGGAU A C CUGCG...ACC-3'@LB@ GGAGGUG UUUUUGGU C GC AGCAUU@LB@ ||||||| ||::|||| | || ||||||@LB@ CCUCCAC AAGGACCA G CG UCGUAA@LB@3'-UUU...CGAUU C U U A AAUAC...UCG-5'@LB@ | |@LB@ 50 21@LB@@LB@@LB@Energy -15.27 kcal/mol@LB@Hybridization Energy -30.554 kcal/mol@LB@Unfolding Energy - mRNA 10.7239 kcal/mol@LB@Unfolding Energy - sRNA 4.55979 kcal/mol@LB@@LB@Position - mRNA 80 -- 105@LB@Position - sRNA 22 -- 49@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 34 |
0.0006341 |
0.06268 |
b3312 |
rpmC |
-15.21 |
0.009642 |
105 -- 128 |
25 -- 49 |
50S ribosomal subunit protein L29 |
|
_____________104________________________129\n_____________|__________________________|\n5'-AAA...GAAAU___C____________A_G_______CCGUG...CAA-3'\n______________GGA_GGU_GUUCC_GG_A_AGCUGGC\n______________|||_|||_|||||_||_|_||||:||\n______________CCU_CCA_CAAGG_CC_U_UCGAUCG\n3'-UUU...CGAUU_______C_____A__A_G_______UAAAA...UCG-5'\n_____________|__________________________|\n_____________50_________________________24\n |
122 -- 128 |
25 -- 31 |
-29.6215 kcal/mol |
9.85059 kcal/mol |
4.5577 kcal/mol |
104 129@LB@ | |@LB@5'-AAA...GAAAU C A G CCGUG...CAA-3'@LB@ GGA GGU GUUCC GG A AGCUGGC@LB@ ||| ||| ||||| || | ||||:||@LB@ CCU CCA CAAGG CC U UCGAUCG@LB@3'-UUU...CGAUU C A A G UAAAA...UCG-5'@LB@ | |@LB@ 50 24@LB@@LB@@LB@Energy -15.21 kcal/mol@LB@Hybridization Energy -29.6215 kcal/mol@LB@Unfolding Energy - mRNA 9.85059 kcal/mol@LB@Unfolding Energy - sRNA 4.5577 kcal/mol@LB@@LB@Position - mRNA 105 -- 128@LB@Position - sRNA 25 -- 49@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 162 |
0.008285 |
0.1719 |
b3671 |
ilvB |
-15.19 |
0.009769 |
264 -- 284 |
22 -- 41 |
acetolactate synthase 2 large subunit |
|
_____________263___________________285\n_____________|_____________________|\n5'-CUA...UUCAU_______A_____AG______AAGAU...GCA-3'\n______________UUCCUGG_ACAGC__GGCAUU\n______________|||||||_|||||__:|||||\n______________AAGGACC_UGUCG__UCGUAA\n3'-UUU...CCACC_______A_____A_______AAUAC...UCG-5'\n_____________|_____________________|\n_____________42____________________21\n |
264 -- 270 |
35 -- 41 |
-26.898 kcal/mol |
7.14717 kcal/mol |
4.5564 kcal/mol |
263 285@LB@ | |@LB@5'-CUA...UUCAU A AG AAGAU...GCA-3'@LB@ UUCCUGG ACAGC GGCAUU@LB@ ||||||| ||||| :|||||@LB@ AAGGACC UGUCG UCGUAA@LB@3'-UUU...CCACC A A AAUAC...UCG-5'@LB@ | |@LB@ 42 21@LB@@LB@@LB@Energy -15.19 kcal/mol@LB@Hybridization Energy -26.898 kcal/mol@LB@Unfolding Energy - mRNA 7.14717 kcal/mol@LB@Unfolding Energy - sRNA 4.5564 kcal/mol@LB@@LB@Position - mRNA 264 -- 284@LB@Position - sRNA 22 -- 41@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 75 |
0.002192 |
0.09621 |
b3950 |
frwB |
-15.16 |
0.010002 |
30 -- 54 |
11 -- 46 |
putative enzyme IIB component of PTS |
b3899 |
_____________29___________________________________55\n_____________|____________________________________|\n5'-GCA...CUGCC_______GAA________A_________________AUCGC...GGG-3'\n______________GGUGGUU________GGC_AGC______UGGGUUAU\n______________|||||||________:||_|||______||||||||\n______________CCACCAA________UCG_UCG______ACCCAAUA\n3'-UUU...UUCCU_______GGACCAUG___A___UAAAAU________CAAAA...UCG-5'\n_____________|____________________________________|\n_____________47___________________________________10\n |
48 -- 54 |
11 -- 17 |
-24.5661 kcal/mol |
4.81447 kcal/mol |
4.59143 kcal/mol |
29 55@LB@ | |@LB@5'-GCA...CUGCC GAA A AUCGC...GGG-3'@LB@ GGUGGUU GGC AGC UGGGUUAU@LB@ ||||||| :|| ||| ||||||||@LB@ CCACCAA UCG UCG ACCCAAUA@LB@3'-UUU...UUCCU GGACCAUG A UAAAAU CAAAA...UCG-5'@LB@ | |@LB@ 47 10@LB@@LB@@LB@Energy -15.16 kcal/mol@LB@Hybridization Energy -24.5661 kcal/mol@LB@Unfolding Energy - mRNA 4.81447 kcal/mol@LB@Unfolding Energy - sRNA 4.59143 kcal/mol@LB@@LB@Position - mRNA 30 -- 54@LB@Position - sRNA 11 -- 46@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 87 |
0.00283 |
0.1082 |
b0657 |
lnt |
-15.14 |
0.010132 |
15 -- 41 |
15 -- 46 |
apolipoprotein N-acyltransferase |
|
_____________14_______________________________42\n_____________|________________________________|\n5'-AAG...CUAUC______________AU__A_____________CAUCU...UCU-3'\n______________GGUGG__UCUGGUG__GC_GGCAUU___UGGG\n______________|||||__:|||||:__||_:|||||___||||\n______________CCACC__GGACCAU__CG_UCGUAA___ACCC\n3'-UUU...UUCCU_____AA_______GU__A______AAU____AAUAC...UCG-5'\n_____________|________________________________|\n_____________47_______________________________14\n |
20 -- 26 |
33 -- 39 |
-31.43 kcal/mol |
11.7158 kcal/mol |
4.57271 kcal/mol |
14 42@LB@ | |@LB@5'-AAG...CUAUC AU A CAUCU...UCU-3'@LB@ GGUGG UCUGGUG GC GGCAUU UGGG@LB@ ||||| :|||||: || :||||| ||||@LB@ CCACC GGACCAU CG UCGUAA ACCC@LB@3'-UUU...UUCCU AA GU A AAU AAUAC...UCG-5'@LB@ | |@LB@ 47 14@LB@@LB@@LB@Energy -15.14 kcal/mol@LB@Hybridization Energy -31.43 kcal/mol@LB@Unfolding Energy - mRNA 11.7158 kcal/mol@LB@Unfolding Energy - sRNA 4.57271 kcal/mol@LB@@LB@Position - mRNA 15 -- 41@LB@Position - sRNA 15 -- 46@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 15 |
0.0001004 |
0.02121 |
b2416 |
ptsI |
-14.97 |
0.011388 |
179 -- 212 |
1 -- 32 |
PEP-protein phosphotransferase of PTS system (enzyme I) |
|
_____________178_________________________________213\n_____________|___________________________________|\n5'-GUG...AAAAU____CACA____AGG___________A___CA___AUUUU...CCG-3'\n______________CAGU____AGUA___UA_GGGUUAUG_UUU__GGC\n______________|||:____||:|___||_||||||||_|||__:||\n______________GUCG____UCGU___AU_CCCAAUAC_AAA__UCG\n3'-UUU...ACCAU____A_______AAA__A________A___AG___-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
197 -- 203 |
10 -- 16 |
-21.5882 kcal/mol |
5.12711 kcal/mol |
1.49075 kcal/mol |
178 213@LB@ | |@LB@5'-GUG...AAAAU CACA AGG A CA AUUUU...CCG-3'@LB@ CAGU AGUA UA GGGUUAUG UUU GGC@LB@ |||: ||:| || |||||||| ||| :||@LB@ GUCG UCGU AU CCCAAUAC AAA UCG@LB@3'-UUU...ACCAU A AAA A A AG -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -14.97 kcal/mol@LB@Hybridization Energy -21.5882 kcal/mol@LB@Unfolding Energy - mRNA 5.12711 kcal/mol@LB@Unfolding Energy - sRNA 1.49075 kcal/mol@LB@@LB@Position - mRNA 179 -- 212@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 10 -- 16@LB@ |
