| 91 |
0.003099 |
0.1126 |
b2343 |
yfcZ |
-10.72 |
0.122030 |
27 -- 34 |
42 -- 49 |
UPF0381 family protein |
|
_____________26_______35\n_____________|________|\n5'-GAA...AAUUU________CGCAC...UGU-3'\n______________GGAGGUGG\n______________||||||||\n______________CCUCCACC\n3'-UUU...CGAUU________AAGGA...UCG-5'\n_____________|________|\n_____________50_______41\n |
28 -- 34 |
42 -- 48 |
-16.5707 kcal/mol |
3.08276 kcal/mol |
2.77009 kcal/mol |
26 35@LB@ | |@LB@5'-GAA...AAUUU CGCAC...UGU-3'@LB@ GGAGGUGG@LB@ ||||||||@LB@ CCUCCACC@LB@3'-UUU...CGAUU AAGGA...UCG-5'@LB@ | |@LB@ 50 41@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -16.5707 kcal/mol@LB@Unfolding Energy - mRNA 3.08276 kcal/mol@LB@Unfolding Energy - sRNA 2.77009 kcal/mol@LB@@LB@Position - mRNA 27 -- 34@LB@Position - sRNA 42 -- 49@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 124 |
0.00526 |
0.1416 |
b3170 |
rimP |
-10.72 |
0.121991 |
191 -- 217 |
24 -- 49 |
ribosome maturation factor for 30S subunits |
|
_____________190__________________________218\n_____________|____________________________|\n5'-CUU...GUCUU________G_____UCC___UUAG____AAAAU...CAU-3'\n______________GGGGGUGG__CUUG___ACA____AGCA\n______________||:|||||__|:||___|||____||||\n______________CCUCCACC__GGAC___UGU____UCGU\n3'-UUU...CGAUU________AA____CA____CGA_____AAAAU...UCG-5'\n_____________|____________________________|\n_____________50___________________________23\n |
192 -- 198 |
42 -- 48 |
-23.9554 kcal/mol |
8.6777 kcal/mol |
4.5591 kcal/mol |
190 218@LB@ | |@LB@5'-CUU...GUCUU G UCC UUAG AAAAU...CAU-3'@LB@ GGGGGUGG CUUG ACA AGCA@LB@ ||:||||| |:|| ||| ||||@LB@ CCUCCACC GGAC UGU UCGU@LB@3'-UUU...CGAUU AA CA CGA AAAAU...UCG-5'@LB@ | |@LB@ 50 23@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -23.9554 kcal/mol@LB@Unfolding Energy - mRNA 8.6777 kcal/mol@LB@Unfolding Energy - sRNA 4.5591 kcal/mol@LB@@LB@Position - mRNA 191 -- 217@LB@Position - sRNA 24 -- 49@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 102 |
0.003761 |
0.123 |
b0928 |
aspC |
-10.71 |
0.122473 |
105 -- 118 |
20 -- 33 |
aspartate aminotransferase PLP-dependent |
|
_____________104____________119\n_____________|______________|\n5'-CGU...CAAAA_____CU_______CAUCA...UUG-3'\n______________ACAGC__GCGUUUU\n______________|||||__||:||||\n______________UGUCG__CGUAAAA\n3'-UUU...GACCA_____AU_______UACCC...UCG-5'\n_____________|______________|\n_____________34_____________19\n |
112 -- 118 |
20 -- 26 |
-14.5276 kcal/mol |
2.38321 kcal/mol |
1.43447 kcal/mol |
104 119@LB@ | |@LB@5'-CGU...CAAAA CU CAUCA...UUG-3'@LB@ ACAGC GCGUUUU@LB@ ||||| ||:||||@LB@ UGUCG CGUAAAA@LB@3'-UUU...GACCA AU UACCC...UCG-5'@LB@ | |@LB@ 34 19@LB@@LB@@LB@Energy -10.71 kcal/mol@LB@Hybridization Energy -14.5276 kcal/mol@LB@Unfolding Energy - mRNA 2.38321 kcal/mol@LB@Unfolding Energy - sRNA 1.43447 kcal/mol@LB@@LB@Position - mRNA 105 -- 118@LB@Position - sRNA 20 -- 33@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 173 |
0.009278 |
0.1803 |
b3495 |
uspA |
-10.68 |
0.124344 |
253 -- 279 |
16 -- 40 |
universal stress global response regulator |
|
_____________252_________________________280\n_____________|___________________________|\n5'-GUC...CAAAG________G__AA____GUCUC_____CUCGC...AAG-3'\n______________UUCUGGUA_AG__AGCA_____UAUGG\n______________|:||||||_||__||||_____|||||\n______________AGGACCAU_UC__UCGU_____AUACC\n3'-UUU...CACCA________G__GA____AAA_______CAAUA...UCG-5'\n_____________|___________________________|\n_____________41__________________________15\n |
254 -- 260 |
33 -- 39 |
-24.2729 kcal/mol |
9.02768 kcal/mol |
4.56874 kcal/mol |
252 280@LB@ | |@LB@5'-GUC...CAAAG G AA GUCUC CUCGC...AAG-3'@LB@ UUCUGGUA AG AGCA UAUGG@LB@ |:|||||| || |||| |||||@LB@ AGGACCAU UC UCGU AUACC@LB@3'-UUU...CACCA G GA AAA CAAUA...UCG-5'@LB@ | |@LB@ 41 15@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -24.2729 kcal/mol@LB@Unfolding Energy - mRNA 9.02768 kcal/mol@LB@Unfolding Energy - sRNA 4.56874 kcal/mol@LB@@LB@Position - mRNA 253 -- 279@LB@Position - sRNA 16 -- 40@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 127 |
0.005388 |
0.142 |
b2721 |
hycE |
-10.66 |
0.125013 |
137 -- 158 |
1 -- 36 |
hydrogenase 3 large subunit |
|
_____________136___________________________________159\n_____________|_____________________________________|\n5'-UUC...GGCUG___UU____UU__________________________GUUCG...UGA-3'\n______________GGU__GGCU__GCAU_______________UUUUAGC\n______________|||__:|||__||||_______________|||:|||\n______________CCA__UCGA__CGUA_______________AAAGUCG\n3'-UUU...AAGGA___UG____U_____AAAUACCCAAUACAA_______-5'\n_____________|____________________________________|\n_____________37___________________________________1\n |
152 -- 158 |
1 -- 7 |
-16.3373 kcal/mol |
4.17778 kcal/mol |
1.49509 kcal/mol |
136 159@LB@ | |@LB@5'-UUC...GGCUG UU UU GUUCG...UGA-3'@LB@ GGU GGCU GCAU UUUUAGC@LB@ ||| :||| |||| |||:|||@LB@ CCA UCGA CGUA AAAGUCG@LB@3'-UUU...AAGGA UG U AAAUACCCAAUACAA -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -10.66 kcal/mol@LB@Hybridization Energy -16.3373 kcal/mol@LB@Unfolding Energy - mRNA 4.17778 kcal/mol@LB@Unfolding Energy - sRNA 1.49509 kcal/mol@LB@@LB@Position - mRNA 137 -- 158@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 115 |
0.004814 |
0.1404 |
b2743 |
pcm |
-10.63 |
0.126788 |
157 -- 183 |
29 -- 48 |
L-isoaspartate protein carboxylmethyltransferase type II |
|
_____________156_________________________184\n_____________|___________________________|\n5'-AUC...CGCAA__U_______CAGA_____UAA_____GUGGG...AAA-3'\n______________GA_GUGGUUU____CUGGU___ACAGC\n______________||_||||||:____|||||___|||||\n______________CU_CACCAAG____GACCA___UGUCG\n3'-UUU...GAUUC__C________________________AUCGU...UCG-5'\n_____________|___________________________|\n_____________49__________________________28\n |
160 -- 166 |
39 -- 45 |
-22.1612 kcal/mol |
7.2267 kcal/mol |
4.30129 kcal/mol |
156 184@LB@ | |@LB@5'-AUC...CGCAA U CAGA UAA GUGGG...AAA-3'@LB@ GA GUGGUUU CUGGU ACAGC@LB@ || ||||||: ||||| |||||@LB@ CU CACCAAG GACCA UGUCG@LB@3'-UUU...GAUUC C AUCGU...UCG-5'@LB@ | |@LB@ 49 28@LB@@LB@@LB@Energy -10.63 kcal/mol@LB@Hybridization Energy -22.1612 kcal/mol@LB@Unfolding Energy - mRNA 7.2267 kcal/mol@LB@Unfolding Energy - sRNA 4.30129 kcal/mol@LB@@LB@Position - mRNA 157 -- 183@LB@Position - sRNA 29 -- 48@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 130 |
0.005552 |
0.1429 |
b1622 |
malY |
-10.60 |
0.128513 |
216 -- 278 |
1 -- 51 |
PLP-dependent beta-cystathionase and maltose regulon regulator |
|
_____________215_____________________________________________________________279\n_____________|_______________________________________________________________|\n5'-UCG...UUUCA____UC____A__G_CAUG___CA______ACACA_____A______CGCUGACCG_______ACUGC...UCA-3'\n______________AAGG__GUGG_UC_U____GCA__UGGUGU_____GUGGG_UUAUGU_________UUUCGGC\n______________||||__||||_||_|____:||__|:|::|_____:||||_||||||_________||||:||\n______________UUCC__CACC_AG_A____UGU__AUCGUA_____UACCC_AAUACA_________AAAGUCG\n3'-UUU...UCCGA____UC____A__G_CCA____CG______AAA______________A_______________-5'\n_____________|______________________________________________________________|\n_____________52_____________________________________________________________1\n |
272 -- 278 |
1 -- 7 |
-34.7892 kcal/mol |
19.4932 kcal/mol |
4.69283 kcal/mol |
215 279@LB@ | |@LB@5'-UCG...UUUCA UC A G CAUG CA ACACA A CGCUGACCG ACUGC...UCA-3'@LB@ AAGG GUGG UC U GCA UGGUGU GUGGG UUAUGU UUUCGGC@LB@ |||| |||| || | :|| |:|::| :|||| |||||| ||||:||@LB@ UUCC CACC AG A UGU AUCGUA UACCC AAUACA AAAGUCG@LB@3'-UUU...UCCGA UC A G CCA CG AAA A -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -34.7892 kcal/mol@LB@Unfolding Energy - mRNA 19.4932 kcal/mol@LB@Unfolding Energy - sRNA 4.69283 kcal/mol@LB@@LB@Position - mRNA 216 -- 278@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 51 |
0.001198 |
0.07744 |
b2174 |
lpxT |
-10.53 |
0.132559 |
260 -- 270 |
31 -- 41 |
lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase |
|
_____________259_________271\n_____________|___________|\n5'-GAA...UUUCU___________UCCCC...CGA-3'\n______________UUCCUGGUAUA\n______________|||||||||:|\n______________AAGGACCAUGU\n3'-UUU...CCACC___________CGAUC...UCG-5'\n_____________|___________|\n_____________42__________30\n |
264 -- 270 |
31 -- 37 |
-15.7095 kcal/mol |
1.92057 kcal/mol |
3.2552 kcal/mol |
259 271@LB@ | |@LB@5'-GAA...UUUCU UCCCC...CGA-3'@LB@ UUCCUGGUAUA@LB@ |||||||||:|@LB@ AAGGACCAUGU@LB@3'-UUU...CCACC CGAUC...UCG-5'@LB@ | |@LB@ 42 30@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -15.7095 kcal/mol@LB@Unfolding Energy - mRNA 1.92057 kcal/mol@LB@Unfolding Energy - sRNA 3.2552 kcal/mol@LB@@LB@Position - mRNA 260 -- 270@LB@Position - sRNA 31 -- 41@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 197 |
0.01153 |
0.1967 |
b0610 |
rnk |
-10.49 |
0.135367 |
130 -- 162 |
7 -- 39 |
regulator of nucleoside diphosphate kinase |
|
_____________129__________________________________163\n_____________|____________________________________|\n5'-UCU...CGCCG___________G__G_____CUUU____________AUCUG...CGU-3'\n______________CCUG__ACGGU_AG_GUUUU____UGGG_UAUGUUU\n______________||||__||:|:_||_:||||____||||_|||||||\n______________GGAC__UGUCG_UC_UAAAA____ACCC_AUACAAA\n3'-UUU...ACCAA____CA_____A__G_____U_______A_______AAGUCG-5'\n_____________|____________________________________|\n_____________40___________________________________6\n |
156 -- 162 |
7 -- 13 |
-25.6411 kcal/mol |
10.5512 kcal/mol |
4.60345 kcal/mol |
129 163@LB@ | |@LB@5'-UCU...CGCCG G G CUUU AUCUG...CGU-3'@LB@ CCUG ACGGU AG GUUUU UGGG UAUGUUU@LB@ |||| ||:|: || :|||| |||| |||||||@LB@ GGAC UGUCG UC UAAAA ACCC AUACAAA@LB@3'-UUU...ACCAA CA A G U A AAGUCG-5'@LB@ | |@LB@ 40 6@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -25.6411 kcal/mol@LB@Unfolding Energy - mRNA 10.5512 kcal/mol@LB@Unfolding Energy - sRNA 4.60345 kcal/mol@LB@@LB@Position - mRNA 130 -- 162@LB@Position - sRNA 7 -- 39@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 160 |
0.008086 |
0.1694 |
b3350 |
kefB |
-10.41 |
0.139805 |
251 -- 273 |
23 -- 46 |
potassium:proton antiporter |
|
_____________250______________________274\n_____________|________________________|\n5'-UAC...GCGGC_____C_G_______C________CGCGG...UGG-3'\n______________GGUGG_U_C_GGUGC_GCUGGCAU\n______________|||||_|_|_|||:|_|||:||||\n______________CCACC_A_G_CCAUG_CGAUCGUA\n3'-UUU...UUCCU_____A_G_A_____U________AAAUA...UCG-5'\n_____________|________________________|\n_____________47_______________________22\n |
267 -- 273 |
23 -- 29 |
-29.1074 kcal/mol |
14.1356 kcal/mol |
4.5585 kcal/mol |
250 274@LB@ | |@LB@5'-UAC...GCGGC C G C CGCGG...UGG-3'@LB@ GGUGG U C GGUGC GCUGGCAU@LB@ ||||| | | |||:| |||:||||@LB@ CCACC A G CCAUG CGAUCGUA@LB@3'-UUU...UUCCU A G A U AAAUA...UCG-5'@LB@ | |@LB@ 47 22@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -29.1074 kcal/mol@LB@Unfolding Energy - mRNA 14.1356 kcal/mol@LB@Unfolding Energy - sRNA 4.5585 kcal/mol@LB@@LB@Position - mRNA 251 -- 273@LB@Position - sRNA 23 -- 46@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 23 -- 29@LB@ |
