| 113 |
0.004738 |
0.1404 |
b3197 |
kdsD |
-14.34 |
0.017174 |
210 -- 240 |
1 -- 35 |
D-arabinose 5-phosphate isomerase |
|
_____________209_________________________________241\n_____________|___________________________________|\n5'-AGG...CGCAC___G________ACC________U__AC_______AAGCA...ACA-3'\n______________GUA_AGUUA_CA______GGGUU_UG__UUUCAGC\n______________|||_||:||_||______|||||_||__|||||||\n______________CAU_UCGAU_GU______CCCAA_AC__AAAGUCG\n3'-UUU...AGGAC___G_____C__AAAAUA_____U__AA_______-5'\n_____________|__________________________________|\n_____________36_________________________________1\n |
234 -- 240 |
1 -- 7 |
-24.924 kcal/mol |
9.08416 kcal/mol |
1.49508 kcal/mol |
209 241@LB@ | |@LB@5'-AGG...CGCAC G ACC U AC AAGCA...ACA-3'@LB@ GUA AGUUA CA GGGUU UG UUUCAGC@LB@ ||| ||:|| || ||||| || |||||||@LB@ CAU UCGAU GU CCCAA AC AAAGUCG@LB@3'-UUU...AGGAC G C AAAAUA U AA -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -14.34 kcal/mol@LB@Hybridization Energy -24.924 kcal/mol@LB@Unfolding Energy - mRNA 9.08416 kcal/mol@LB@Unfolding Energy - sRNA 1.49508 kcal/mol@LB@@LB@Position - mRNA 210 -- 240@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 171 |
0.00925 |
0.1803 |
b3832 |
rmuC |
-14.29 |
0.017807 |
191 -- 257 |
1 -- 50 |
DNA recombination protein |
|
_____________190___________________________________________________________________258\n_____________|_____________________________________________________________________|\n5'-AAA...GCGUC______CGUUG___A____UCAAUCA____UUAC_______UU_____G___________GCAA_____UGGCU...AGC-3'\n______________AGGAGG_____UGG_UUUC_______UGGU____GCAGUUA__GCGUU__GUGGG_UGUG____UUGGC\n______________||||||_____|||_||:|_______||||____:|||:||__||:||__:||||_|:||____|::||\n______________UCCUCC_____ACC_AAGG_______ACCA____UGUCGAU__CGUAA__UACCC_AUAC____AGUCG\n3'-UUU...CCGAU________________________________________________AA_____A____AAAA_____-5'\n_____________|____________________________________________________________________|\n_____________51___________________________________________________________________1\n |
225 -- 231 |
27 -- 33 |
-40.6833 kcal/mol |
21.7322 kcal/mol |
4.6634 kcal/mol |
190 258@LB@ | |@LB@5'-AAA...GCGUC CGUUG A UCAAUCA UUAC UU G GCAA UGGCU...AGC-3'@LB@ AGGAGG UGG UUUC UGGU GCAGUUA GCGUU GUGGG UGUG UUGGC@LB@ |||||| ||| ||:| |||| :|||:|| ||:|| :|||| |:|| |::||@LB@ UCCUCC ACC AAGG ACCA UGUCGAU CGUAA UACCC AUAC AGUCG@LB@3'-UUU...CCGAU AA A AAAA -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -14.29 kcal/mol@LB@Hybridization Energy -40.6833 kcal/mol@LB@Unfolding Energy - mRNA 21.7322 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 191 -- 257@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 175 |
0.009651 |
0.1848 |
b2016 |
yeeZ |
-14.25 |
0.018278 |
222 -- 265 |
1 -- 50 |
putative epimerase |
|
_____________221_______________________________________________________266\n_____________|_________________________________________________________|\n5'-ACC...UUGUC___UUA________A____CA___C______________________CAC_______GCGAG...CAC-3'\n______________GGG___GGGUGGUU___GG__UGC_GCUGGCG___________AUGU___UUUCAGC\n______________:||___:|||||||___||__|:|_|||:||:___________||||___|||||||\n______________UCC___UCCACCAA___CC__AUG_CGAUCGU___________UACA___AAAGUCG\n3'-UUU...CCGAU______________GGA_______U_______AAAAUACCCAA____A_________-5'\n_____________|________________________________________________________|\n_____________51_______________________________________________________1\n |
259 -- 265 |
1 -- 7 |
-34.6896 kcal/mol |
15.7797 kcal/mol |
4.6634 kcal/mol |
221 266@LB@ | |@LB@5'-ACC...UUGUC UUA A CA C CAC GCGAG...CAC-3'@LB@ GGG GGGUGGUU GG UGC GCUGGCG AUGU UUUCAGC@LB@ :|| :||||||| || |:| |||:||: |||| |||||||@LB@ UCC UCCACCAA CC AUG CGAUCGU UACA AAAGUCG@LB@3'-UUU...CCGAU GGA U AAAAUACCCAA A -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -14.25 kcal/mol@LB@Hybridization Energy -34.6896 kcal/mol@LB@Unfolding Energy - mRNA 15.7797 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 222 -- 265@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 50 |
0.001175 |
0.07744 |
b3543 |
dppB |
-14.13 |
0.019609 |
196 -- 210 |
1 -- 17 |
dipeptide/heme ABC transporter permease |
|
_____________195_______________211\n_____________|_________________|\n5'-CGG...AAUCC__________G______UUAUU...AUC-3'\n______________GGGUUAUGUU___CAGU\n______________||||||||||___|||:\n______________CCCAAUACAA___GUCG\n3'-UUU...AAAUA__________AAA____-5'\n_____________|________________|\n_____________18_______________1\n |
199 -- 205 |
8 -- 14 |
-17.9134 kcal/mol |
2.84721 kcal/mol |
0.931609 kcal/mol |
195 211@LB@ | |@LB@5'-CGG...AAUCC G UUAUU...AUC-3'@LB@ GGGUUAUGUU CAGU@LB@ |||||||||| |||:@LB@ CCCAAUACAA GUCG@LB@3'-UUU...AAAUA AAA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -14.13 kcal/mol@LB@Hybridization Energy -17.9134 kcal/mol@LB@Unfolding Energy - mRNA 2.84721 kcal/mol@LB@Unfolding Energy - sRNA 0.931609 kcal/mol@LB@@LB@Position - mRNA 196 -- 210@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 10 |
2.916e-05 |
0.0098 |
b1890 |
motA |
-14.10 |
0.019983 |
224 -- 242 |
28 -- 46 |
proton conductor component of flagella motor |
|
_____________223_________________243\n_____________|___________________|\n5'-GAC...UACCU___U_____C_________UUCGG...AAC-3'\n______________GGU_GUUCU_GGUACAGUU\n______________|||_||||:_|||||||:|\n______________CCA_CAAGG_CCAUGUCGA\n3'-UUU...UUCCU___C_____A_________UCGUA...UCG-5'\n_____________|___________________|\n_____________47__________________27\n |
236 -- 242 |
28 -- 34 |
-23.9025 kcal/mol |
5.49413 kcal/mol |
4.3041 kcal/mol |
223 243@LB@ | |@LB@5'-GAC...UACCU U C UUCGG...AAC-3'@LB@ GGU GUUCU GGUACAGUU@LB@ ||| ||||: |||||||:|@LB@ CCA CAAGG CCAUGUCGA@LB@3'-UUU...UUCCU C A UCGUA...UCG-5'@LB@ | |@LB@ 47 27@LB@@LB@@LB@Energy -14.10 kcal/mol@LB@Hybridization Energy -23.9025 kcal/mol@LB@Unfolding Energy - mRNA 5.49413 kcal/mol@LB@Unfolding Energy - sRNA 4.3041 kcal/mol@LB@@LB@Position - mRNA 224 -- 242@LB@Position - sRNA 28 -- 46@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 58 |
0.001429 |
0.08147 |
b0698 |
kdpA |
-14.04 |
0.020858 |
136 -- 172 |
7 -- 35 |
potassium translocating ATPase subunit A |
|
_____________135___________________________________173\n_____________|_____________________________________|\n5'-GCU...CCGGC____U___________UAUUAC________CUG____AUGCC...ACA-3'\n______________GUAU_GCUGGUGUUUU______UGGGUUAU___GUUU\n______________|||:_|||:|::||||______||||||||___||||\n______________CAUG_CGAUCGUAAAA______ACCCAAUA___CAAA\n3'-UUU...AGGAC____U___________U____________________AAGUCG-5'\n_____________|_____________________________________|\n_____________36____________________________________6\n |
159 -- 165 |
11 -- 17 |
-23.8836 kcal/mol |
8.35779 kcal/mol |
1.49058 kcal/mol |
135 173@LB@ | |@LB@5'-GCU...CCGGC U UAUUAC CUG AUGCC...ACA-3'@LB@ GUAU GCUGGUGUUUU UGGGUUAU GUUU@LB@ |||: |||:|::|||| |||||||| ||||@LB@ CAUG CGAUCGUAAAA ACCCAAUA CAAA@LB@3'-UUU...AGGAC U U AAGUCG-5'@LB@ | |@LB@ 36 6@LB@@LB@@LB@Energy -14.04 kcal/mol@LB@Hybridization Energy -23.8836 kcal/mol@LB@Unfolding Energy - mRNA 8.35779 kcal/mol@LB@Unfolding Energy - sRNA 1.49058 kcal/mol@LB@@LB@Position - mRNA 136 -- 172@LB@Position - sRNA 7 -- 35@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 68 |
0.001845 |
0.09081 |
b2957 |
ansB |
-14.03 |
0.020893 |
243 -- 268 |
22 -- 43 |
periplasmic L-asparaginase 2 |
|
_____________242________________________269\n_____________|__________________________|\n5'-AGC...UUAUG______AG_________AU_______ACCCA...GGA-3'\n______________GGUUUU__UGGUGCAGC__UGGCAUU\n______________||||::__||||:||||__|:|||||\n______________CCAAGG__ACCAUGUCG__AUCGUAA\n3'-UUU...CUCCA__________________________AAUAC...UCG-5'\n_____________|__________________________|\n_____________44_________________________21\n |
262 -- 268 |
22 -- 28 |
-26.4763 kcal/mol |
7.8858 kcal/mol |
4.55803 kcal/mol |
242 269@LB@ | |@LB@5'-AGC...UUAUG AG AU ACCCA...GGA-3'@LB@ GGUUUU UGGUGCAGC UGGCAUU@LB@ ||||:: ||||:|||| |:|||||@LB@ CCAAGG ACCAUGUCG AUCGUAA@LB@3'-UUU...CUCCA AAUAC...UCG-5'@LB@ | |@LB@ 44 21@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -26.4763 kcal/mol@LB@Unfolding Energy - mRNA 7.8858 kcal/mol@LB@Unfolding Energy - sRNA 4.55803 kcal/mol@LB@@LB@Position - mRNA 243 -- 268@LB@Position - sRNA 22 -- 43@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 78 |
0.002256 |
0.09621 |
b0509 |
glxR |
-14.00 |
0.021344 |
191 -- 236 |
14 -- 48 |
tartronate semialdehyde reductase NADH-dependent |
b3882 b3125 |
_____________190______________________________________________237\n_____________|________________________________________________|\n5'-AGG...UAAAA_____UAAUUAUGAAA____GAUUUAU_____UA______________ACACC...CGG-3'\n______________GAGGU___________CUGG_______UGGCU__GGCAU__UAUGGGU\n______________|||||___________||||_______::|||__:||||__|||||||\n______________CUCCA___________GACC_______GUCGA__UCGUA__AUACCCA\n3'-UUU...GAUUC_____CCAAG__________AU_________________AA_______AUACA...UCG-5'\n_____________|________________________________________________|\n_____________49_______________________________________________13\n |
230 -- 236 |
14 -- 20 |
-26.1649 kcal/mol |
7.59311 kcal/mol |
4.57384 kcal/mol |
190 237@LB@ | |@LB@5'-AGG...UAAAA UAAUUAUGAAA GAUUUAU UA ACACC...CGG-3'@LB@ GAGGU CUGG UGGCU GGCAU UAUGGGU@LB@ ||||| |||| ::||| :|||| |||||||@LB@ CUCCA GACC GUCGA UCGUA AUACCCA@LB@3'-UUU...GAUUC CCAAG AU AA AUACA...UCG-5'@LB@ | |@LB@ 49 13@LB@@LB@@LB@Energy -14.00 kcal/mol@LB@Hybridization Energy -26.1649 kcal/mol@LB@Unfolding Energy - mRNA 7.59311 kcal/mol@LB@Unfolding Energy - sRNA 4.57384 kcal/mol@LB@@LB@Position - mRNA 191 -- 236@LB@Position - sRNA 14 -- 48@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 96 |
0.003358 |
0.117 |
b3367 |
nirC |
-13.97 |
0.021706 |
56 -- 81 |
6 -- 37 |
nitrite transporter |
|
_____________55_________________________________82\n_____________|__________________________________|\n5'-AUG...CGGCG___________C______________A_______AACGG...UGG-3'\n______________UGGUGCAGCUG_GC________GGUU_AUGUUUU\n______________||||:|||||:_||________||||_|||||||\n______________ACCAUGUCGAU_CG________CCAA_UACAAAA\n3'-UUU...CAAGG______________UAAAAUAC____________AGUCG-5'\n_____________|__________________________________|\n_____________38_________________________________5\n |
75 -- 81 |
6 -- 12 |
-26.6239 kcal/mol |
9.95316 kcal/mol |
2.70019 kcal/mol |
55 82@LB@ | |@LB@5'-AUG...CGGCG C A AACGG...UGG-3'@LB@ UGGUGCAGCUG GC GGUU AUGUUUU@LB@ ||||:|||||: || |||| |||||||@LB@ ACCAUGUCGAU CG CCAA UACAAAA@LB@3'-UUU...CAAGG UAAAAUAC AGUCG-5'@LB@ | |@LB@ 38 5@LB@@LB@@LB@Energy -13.97 kcal/mol@LB@Hybridization Energy -26.6239 kcal/mol@LB@Unfolding Energy - mRNA 9.95316 kcal/mol@LB@Unfolding Energy - sRNA 2.70019 kcal/mol@LB@@LB@Position - mRNA 56 -- 81@LB@Position - sRNA 6 -- 37@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 23 |
0.0002818 |
0.04118 |
b1813 |
nudL |
-13.86 |
0.023273 |
1 -- 17 |
22 -- 39 |
putative CoA pyrophosphohydrolase weak 3-phosphohydroxypyruvate phosphatase |
|
______________1_________________18\n______________|_________________|\n___________5'-__________________GGCUA...CUG-3'\n______________CCUGGUGCGGC_AGCAUU\n______________||||||:|:||_||||||\n______________GGACCAUGUCG_UCGUAA\n3'-UUU...ACCAA___________A______AAUAC...UCG-5'\n_____________|__________________|\n_____________40_________________21\n |
5 -- 11 |
29 -- 35 |
-27.845 kcal/mol |
9.43444 kcal/mol |
4.55392 kcal/mol |
1 18@LB@ | |@LB@ 5'- GGCUA...CUG-3'@LB@ CCUGGUGCGGC AGCAUU@LB@ ||||||:|:|| ||||||@LB@ GGACCAUGUCG UCGUAA@LB@3'-UUU...ACCAA A AAUAC...UCG-5'@LB@ | |@LB@ 40 21@LB@@LB@@LB@Energy -13.86 kcal/mol@LB@Hybridization Energy -27.845 kcal/mol@LB@Unfolding Energy - mRNA 9.43444 kcal/mol@LB@Unfolding Energy - sRNA 4.55392 kcal/mol@LB@@LB@Position - mRNA 1 -- 17@LB@Position - sRNA 22 -- 39@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 29 -- 35@LB@ |
