| 183 |
0.01048 |
0.1919 |
b1250 |
kch |
-17.60 |
0.001460 |
228 -- 258 |
1 -- 33 |
voltage-gated potassium channel |
|
_____________227_______________________________259\n_____________|_________________________________|\n5'-AAC...AACAA_____AACAAA_________GACCC________ACGAC...UUA-3'\n______________ACAGC______UUUAUGGGU_______UUCGGC\n______________|||||______|||||||||_______|||:||\n______________UGUCG______AAAUACCCA_______AAGUCG\n3'-UUU...GACCA_____AUCGUA_________AUACAAA______-5'\n_____________|________________________________|\n_____________34_______________________________1\n |
241 -- 247 |
14 -- 20 |
-24.8286 kcal/mol |
5.73827 kcal/mol |
1.49313 kcal/mol |
227 259@LB@ | |@LB@5'-AAC...AACAA AACAAA GACCC ACGAC...UUA-3'@LB@ ACAGC UUUAUGGGU UUCGGC@LB@ ||||| ||||||||| |||:||@LB@ UGUCG AAAUACCCA AAGUCG@LB@3'-UUU...GACCA AUCGUA AUACAAA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -17.60 kcal/mol@LB@Hybridization Energy -24.8286 kcal/mol@LB@Unfolding Energy - mRNA 5.73827 kcal/mol@LB@Unfolding Energy - sRNA 1.49313 kcal/mol@LB@@LB@Position - mRNA 228 -- 258@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 62 |
0.00164 |
0.08891 |
b0922 |
mukF |
-17.51 |
0.001582 |
1 -- 30 |
14 -- 38 |
chromosome condensin MukBEF kleisin-like subunit binds calcium |
|
______________1_____________________________31\n______________|_____________________________|\n___________5'-____AAGAA__U________AA________AAGAC...UGG-3'\n______________CUGG_____GC_GGUUGGCA__UUAUGGGU\n______________||||_____:|_:|:|:|||__||||||||\n______________GACC_____UG_UCGAUCGU__AAUACCCA\n3'-UUU...CCAAG____A_______________AA________AUACA...UCG-5'\n_____________|______________________________|\n_____________39_____________________________13\n |
24 -- 30 |
14 -- 20 |
-25.2653 kcal/mol |
3.2564 kcal/mol |
4.5012 kcal/mol |
1 31@LB@ | |@LB@ 5'- AAGAA U AA AAGAC...UGG-3'@LB@ CUGG GC GGUUGGCA UUAUGGGU@LB@ |||| :| :|:|:||| ||||||||@LB@ GACC UG UCGAUCGU AAUACCCA@LB@3'-UUU...CCAAG A AA AUACA...UCG-5'@LB@ | |@LB@ 39 13@LB@@LB@@LB@Energy -17.51 kcal/mol@LB@Hybridization Energy -25.2653 kcal/mol@LB@Unfolding Energy - mRNA 3.2564 kcal/mol@LB@Unfolding Energy - sRNA 4.5012 kcal/mol@LB@@LB@Position - mRNA 1 -- 30@LB@Position - sRNA 14 -- 38@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 8 |
1.749e-05 |
0.007346 |
b3294 |
rplQ |
-17.07 |
0.002316 |
5 -- 20 |
29 -- 46 |
50S ribosomal subunit protein L17 |
|
_____________4__________________21\n_____________|__________________|\n_______5'-UAUC____A_____________GUACC...UCA-3'\n______________GGUG___UCUGGUACAGC\n______________||||___:||||||||||\n______________CCAC___GGACCAUGUCG\n3'-UUU...UUCCU____CAA___________AUCGU...UCG-5'\n_____________|__________________|\n_____________47_________________28\n |
14 -- 20 |
29 -- 35 |
-24.8218 kcal/mol |
3.44934 kcal/mol |
4.30059 kcal/mol |
4 21@LB@ | |@LB@ 5'-UAUC A GUACC...UCA-3'@LB@ GGUG UCUGGUACAGC@LB@ |||| :||||||||||@LB@ CCAC GGACCAUGUCG@LB@3'-UUU...UUCCU CAA AUCGU...UCG-5'@LB@ | |@LB@ 47 28@LB@@LB@@LB@Energy -17.07 kcal/mol@LB@Hybridization Energy -24.8218 kcal/mol@LB@Unfolding Energy - mRNA 3.44934 kcal/mol@LB@Unfolding Energy - sRNA 4.30059 kcal/mol@LB@@LB@Position - mRNA 5 -- 20@LB@Position - sRNA 29 -- 46@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 5 |
6.68e-06 |
0.00395 |
b1918 |
yecS |
-16.73 |
0.003069 |
259 -- 299 |
1 -- 36 |
ABC family putative inner membrane permease |
|
_____________258________________________________________300\n_____________|__________________________________________|\n5'-GGC...GGCUG______C_______ACUCAG___C__C_GC____________U-3'\n______________GGUAUA_GCU_GCA______UAU_GG_G__AUGUUUUUUGGC\n______________||||:|_|||_|||______|||_||_|__||||||||::||\n______________CCAUGU_CGA_CGU______AUA_CC_C__UACAAAAAGUCG\n3'-UUU...AAGGA__________U___AAA___________AA____________-5'\n_____________|_________________________________________|\n_____________37________________________________________1\n |
293 -- 299 |
1 -- 7 |
-28.0078 kcal/mol |
9.77847 kcal/mol |
1.49509 kcal/mol |
258 300@LB@ | |@LB@5'-GGC...GGCUG C ACUCAG C C GC U-3'@LB@ GGUAUA GCU GCA UAU GG G AUGUUUUUUGGC@LB@ ||||:| ||| ||| ||| || | ||||||||::||@LB@ CCAUGU CGA CGU AUA CC C UACAAAAAGUCG@LB@3'-UUU...AAGGA U AAA AA -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -16.73 kcal/mol@LB@Hybridization Energy -28.0078 kcal/mol@LB@Unfolding Energy - mRNA 9.77847 kcal/mol@LB@Unfolding Energy - sRNA 1.49509 kcal/mol@LB@@LB@Position - mRNA 259 -- 299@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 24 |
0.0003458 |
0.04652 |
b2308 |
hisQ |
-16.60 |
0.003436 |
190 -- 219 |
2 -- 36 |
histidine ABC transporter permease |
|
_____________189___________________________________220\n_____________|_____________________________________|\n5'-GAU...CGACA_______GC_____GUUG___________________GUGUU...UUG-3'\n______________GG_ACAG__AGCAU____UAUGGGUU______UUCAG\n______________||_||||__|||||____||||||||______|||||\n______________CC_UGUC__UCGUA____AUACCCAA______AAGUC\n3'-UUU...AAGGA__A____GA_____AA__________UACAAA_____G-5'\n_____________|_____________________________________|\n_____________37____________________________________1\n |
208 -- 214 |
13 -- 19 |
-26.4576 kcal/mol |
8.3674 kcal/mol |
1.49503 kcal/mol |
189 220@LB@ | |@LB@5'-GAU...CGACA GC GUUG GUGUU...UUG-3'@LB@ GG ACAG AGCAU UAUGGGUU UUCAG@LB@ || |||| ||||| |||||||| |||||@LB@ CC UGUC UCGUA AUACCCAA AAGUC@LB@3'-UUU...AAGGA A GA AA UACAAA G-5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -16.60 kcal/mol@LB@Hybridization Energy -26.4576 kcal/mol@LB@Unfolding Energy - mRNA 8.3674 kcal/mol@LB@Unfolding Energy - sRNA 1.49503 kcal/mol@LB@@LB@Position - mRNA 190 -- 219@LB@Position - sRNA 2 -- 36@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 74 |
0.00218 |
0.09621 |
b2722 |
hycD |
-16.42 |
0.003958 |
87 -- 124 |
10 -- 46 |
hydrogenase 3 membrane subunit |
|
_____________86_______________________________________125\n_____________|________________________________________|\n5'-UCA...AAUCC________U_______CG________GUGCGA___GA___CGUUG...ACC-3'\n______________GGUG__UC_CUGGUGC__GGCUGGCA______GGG__GUG\n______________||||__||_|||||:|__:|||:|||______|||__:||\n______________CCAC__AG_GACCAUG__UCGAUCGU______CCC__UAC\n3'-UUU...UUCCU____CA____________________AAAAUA___AA___AAAAA...UCG-5'\n_____________|________________________________________|\n_____________47_______________________________________9\n |
104 -- 110 |
24 -- 30 |
-37.0223 kcal/mol |
15.9993 kcal/mol |
4.60552 kcal/mol |
86 125@LB@ | |@LB@5'-UCA...AAUCC U CG GUGCGA GA CGUUG...ACC-3'@LB@ GGUG UC CUGGUGC GGCUGGCA GGG GUG@LB@ |||| || |||||:| :|||:||| ||| :||@LB@ CCAC AG GACCAUG UCGAUCGU CCC UAC@LB@3'-UUU...UUCCU CA AAAAUA AA AAAAA...UCG-5'@LB@ | |@LB@ 47 9@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -37.0223 kcal/mol@LB@Unfolding Energy - mRNA 15.9993 kcal/mol@LB@Unfolding Energy - sRNA 4.60552 kcal/mol@LB@@LB@Position - mRNA 87 -- 124@LB@Position - sRNA 10 -- 46@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 77 |
0.002255 |
0.09621 |
b3052 |
hldE |
-16.16 |
0.004835 |
103 -- 144 |
10 -- 48 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________102___________________________________________145\n_____________|_____________________________________________|\n5'-GCG...CCGCA___C___AA_________GGGCA________GAA_____CUG___GAAGA...CGC-3'\n______________GAG_GUG____CUGGUGC_____AGCUGGCA____GUGG___GUG\n______________|||_|||____|||||:|_____||||:|||____:|||___:||\n______________CUC_CAC____GACCAUG_____UCGAUCGU____UACC___UAC\n3'-UUU...GAUUC_______CAAG____________________AAAA____CAA___AAAAA...UCG-5'\n_____________|_____________________________________________|\n_____________49____________________________________________9\n |
125 -- 131 |
24 -- 30 |
-34.5885 kcal/mol |
13.822 kcal/mol |
4.60637 kcal/mol |
102 145@LB@ | |@LB@5'-GCG...CCGCA C AA GGGCA GAA CUG GAAGA...CGC-3'@LB@ GAG GUG CUGGUGC AGCUGGCA GUGG GUG@LB@ ||| ||| |||||:| ||||:||| :||| :||@LB@ CUC CAC GACCAUG UCGAUCGU UACC UAC@LB@3'-UUU...GAUUC CAAG AAAA CAA AAAAA...UCG-5'@LB@ | |@LB@ 49 9@LB@@LB@@LB@Energy -16.16 kcal/mol@LB@Hybridization Energy -34.5885 kcal/mol@LB@Unfolding Energy - mRNA 13.822 kcal/mol@LB@Unfolding Energy - sRNA 4.60637 kcal/mol@LB@@LB@Position - mRNA 103 -- 144@LB@Position - sRNA 10 -- 48@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 141 |
0.006623 |
0.1579 |
b1992 |
cobS |
-16.13 |
0.004945 |
167 -- 192 |
24 -- 49 |
cobalamin synthase |
|
_____________166_________________________193\n_____________|___________________________|\n5'-GAG...AGUAU__CU_________G_____UGG_____AAAAU...GUA-3'\n______________GG__GGUGGUUUC_GGUAU____AGUA\n______________||__|||||||:|_||||:____||:|\n______________CC__CCACCAAGG_CCAUG____UCGU\n3'-UUU...CGAUU__U__________A_____UCGA____AAAAU...UCG-5'\n_____________|___________________________|\n_____________50__________________________23\n |
173 -- 179 |
38 -- 44 |
-26.3933 kcal/mol |
5.70356 kcal/mol |
4.5591 kcal/mol |
166 193@LB@ | |@LB@5'-GAG...AGUAU CU G UGG AAAAU...GUA-3'@LB@ GG GGUGGUUUC GGUAU AGUA@LB@ || |||||||:| ||||: ||:|@LB@ CC CCACCAAGG CCAUG UCGU@LB@3'-UUU...CGAUU U A UCGA AAAAU...UCG-5'@LB@ | |@LB@ 50 23@LB@@LB@@LB@Energy -16.13 kcal/mol@LB@Hybridization Energy -26.3933 kcal/mol@LB@Unfolding Energy - mRNA 5.70356 kcal/mol@LB@Unfolding Energy - sRNA 4.5591 kcal/mol@LB@@LB@Position - mRNA 167 -- 192@LB@Position - sRNA 24 -- 49@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 81 |
0.002689 |
0.1082 |
b1498 |
ydeN |
-15.88 |
0.005981 |
253 -- 275 |
21 -- 44 |
putative Ser-type periplasmic non-aryl sulfatase |
b3678 b3801 |
_____________252______________________276\n_____________|________________________|\n5'-AUU...GAUAC___CA___________________GCUGC...UAA-3'\n______________UGG__UCUGGUAUGGCU_GCAUUU\n______________|||__:||||||::|||_||||||\n______________ACC__GGACCAUGUCGA_CGUAAA\n3'-UUU...CCUCC___AA____________U______AUACC...UCG-5'\n_____________|________________________|\n_____________45_______________________20\n |
263 -- 269 |
28 -- 34 |
-26.8614 kcal/mol |
6.42389 kcal/mol |
4.55918 kcal/mol |
252 276@LB@ | |@LB@5'-AUU...GAUAC CA GCUGC...UAA-3'@LB@ UGG UCUGGUAUGGCU GCAUUU@LB@ ||| :||||||::||| ||||||@LB@ ACC GGACCAUGUCGA CGUAAA@LB@3'-UUU...CCUCC AA U AUACC...UCG-5'@LB@ | |@LB@ 45 20@LB@@LB@@LB@Energy -15.88 kcal/mol@LB@Hybridization Energy -26.8614 kcal/mol@LB@Unfolding Energy - mRNA 6.42389 kcal/mol@LB@Unfolding Energy - sRNA 4.55918 kcal/mol@LB@@LB@Position - mRNA 253 -- 275@LB@Position - sRNA 21 -- 44@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 63 |
0.00172 |
0.09016 |
b1209 |
lolB |
-15.80 |
0.006355 |
144 -- 167 |
11 -- 36 |
lipoprotein localization factor |
|
_____________143________________________168\n_____________|__________________________|\n5'-AAU...CGGAC____AC_________AA_________AACUG...GCC-3'\n______________GGUA__GCUAGCAUU____GGGUUAU\n______________||||__|||||||||____|||||||\n______________CCAU__CGAUCGUAA____CCCAAUA\n3'-UUU...AAGGA____GU_________AAUA_______CAAAA...UCG-5'\n_____________|__________________________|\n_____________37_________________________10\n |
161 -- 167 |
11 -- 17 |
-25.6291 kcal/mol |
8.35909 kcal/mol |
1.47376 kcal/mol |
143 168@LB@ | |@LB@5'-AAU...CGGAC AC AA AACUG...GCC-3'@LB@ GGUA GCUAGCAUU GGGUUAU@LB@ |||| ||||||||| |||||||@LB@ CCAU CGAUCGUAA CCCAAUA@LB@3'-UUU...AAGGA GU AAUA CAAAA...UCG-5'@LB@ | |@LB@ 37 10@LB@@LB@@LB@Energy -15.80 kcal/mol@LB@Hybridization Energy -25.6291 kcal/mol@LB@Unfolding Energy - mRNA 8.35909 kcal/mol@LB@Unfolding Energy - sRNA 1.47376 kcal/mol@LB@@LB@Position - mRNA 144 -- 167@LB@Position - sRNA 11 -- 36@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 11 -- 17@LB@ |
