| 153 |
0.00769 |
0.1686 |
b3292 |
zntR |
-12.84 |
0.042049 |
212 -- 231 |
16 -- 37 |
zntA gene transcriptional activator |
|
_____________211____________________232\n_____________|______________________|\n5'-UGA...CGCAU______________AAA_____CGGAA...CUG-3'\n______________UGGUG_AGCUGGCA____AUGG\n______________||||:_||||:|||____||||\n______________ACCAU_UCGAUCGU____UACC\n3'-UUU...CAAGG_____G________AAAA____CAAUA...UCG-5'\n_____________|______________________|\n_____________38_____________________15\n |
218 -- 224 |
24 -- 30 |
-20.2277 kcal/mol |
4.73271 kcal/mol |
2.65753 kcal/mol |
211 232@LB@ | |@LB@5'-UGA...CGCAU AAA CGGAA...CUG-3'@LB@ UGGUG AGCUGGCA AUGG@LB@ ||||: ||||:||| ||||@LB@ ACCAU UCGAUCGU UACC@LB@3'-UUU...CAAGG G AAAA CAAUA...UCG-5'@LB@ | |@LB@ 38 15@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -20.2277 kcal/mol@LB@Unfolding Energy - mRNA 4.73271 kcal/mol@LB@Unfolding Energy - sRNA 2.65753 kcal/mol@LB@@LB@Position - mRNA 212 -- 231@LB@Position - sRNA 16 -- 37@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 97 |
0.003376 |
0.117 |
b2145 |
yeiS |
-12.83 |
0.042234 |
207 -- 237 |
4 -- 35 |
DUF2542 family protein |
|
_____________206_______________________________238\n_____________|_________________________________|\n5'-AUG...UGGAU___________U______C_____CC_______UCCUU...AUA-3'\n______________GUACAGC_AGU_UUUUGU__GUUG__GUUUUUU\n______________|||||||_||:_||||:|__|||:__||||||:\n______________CAUGUCG_UCG_AAAAUA__CAAU__CAAAAAG\n3'-UUU...AGGAC_______A___U______CC____A________UCG-5'\n_____________|_________________________________|\n_____________36________________________________3\n |
231 -- 237 |
4 -- 10 |
-21.2811 kcal/mol |
6.9566 kcal/mol |
1.49488 kcal/mol |
206 238@LB@ | |@LB@5'-AUG...UGGAU U C CC UCCUU...AUA-3'@LB@ GUACAGC AGU UUUUGU GUUG GUUUUUU@LB@ ||||||| ||: ||||:| |||: ||||||:@LB@ CAUGUCG UCG AAAAUA CAAU CAAAAAG@LB@3'-UUU...AGGAC A U CC A UCG-5'@LB@ | |@LB@ 36 3@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -21.2811 kcal/mol@LB@Unfolding Energy - mRNA 6.9566 kcal/mol@LB@Unfolding Energy - sRNA 1.49488 kcal/mol@LB@@LB@Position - mRNA 207 -- 237@LB@Position - sRNA 4 -- 35@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 107 |
0.004137 |
0.1296 |
b2164 |
psuT |
-12.74 |
0.044381 |
225 -- 254 |
21 -- 50 |
putative nucleoside transporter |
b2161 |
_____________224_______________________________255\n_____________|_________________________________|\n5'-CUG...UUGUG____U______GUUA________A_________CUGUU...GAG-3'\n______________GGGA_GGUGGU____CUGG__CA__UAGCAUUU\n______________:|||_||||||____||||__||__||||||||\n______________UCCU_CCACCA____GACC__GU__AUCGUAAA\n3'-UUU...CCGAU___________AG______AU__CG________AUACC...UCG-5'\n_____________|_________________________________|\n_____________51________________________________20\n |
248 -- 254 |
21 -- 27 |
-28.746 kcal/mol |
11.392 kcal/mol |
4.61445 kcal/mol |
224 255@LB@ | |@LB@5'-CUG...UUGUG U GUUA A CUGUU...GAG-3'@LB@ GGGA GGUGGU CUGG CA UAGCAUUU@LB@ :||| |||||| |||| || ||||||||@LB@ UCCU CCACCA GACC GU AUCGUAAA@LB@3'-UUU...CCGAU AG AU CG AUACC...UCG-5'@LB@ | |@LB@ 51 20@LB@@LB@@LB@Energy -12.74 kcal/mol@LB@Hybridization Energy -28.746 kcal/mol@LB@Unfolding Energy - mRNA 11.392 kcal/mol@LB@Unfolding Energy - sRNA 4.61445 kcal/mol@LB@@LB@Position - mRNA 225 -- 254@LB@Position - sRNA 21 -- 50@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 65 |
0.001744 |
0.09016 |
b3541 |
dppD |
-12.71 |
0.044996 |
114 -- 148 |
14 -- 40 |
dipeptide/heme ABC transporter ATPas |
|
_____________113_________________________________149\n_____________|___________________________________|\n5'-UUU...GGCGA_____CUG___GU__________AACCUG______GACGG...GCG-3'\n______________UCCUG___ACG__GCUGGCAUUU______AUGGGU\n______________|||||___||:__|||:||||||______||||||\n______________AGGAC___UGU__CGAUCGUAAA______UACCCA\n3'-UUU...CACCA_____CA________________A___________AUACA...UCG-5'\n_____________|___________________________________|\n_____________41__________________________________13\n |
130 -- 136 |
21 -- 27 |
-26.5011 kcal/mol |
9.21659 kcal/mol |
4.57003 kcal/mol |
113 149@LB@ | |@LB@5'-UUU...GGCGA CUG GU AACCUG GACGG...GCG-3'@LB@ UCCUG ACG GCUGGCAUUU AUGGGU@LB@ ||||| ||: |||:|||||| ||||||@LB@ AGGAC UGU CGAUCGUAAA UACCCA@LB@3'-UUU...CACCA CA A AUACA...UCG-5'@LB@ | |@LB@ 41 13@LB@@LB@@LB@Energy -12.71 kcal/mol@LB@Hybridization Energy -26.5011 kcal/mol@LB@Unfolding Energy - mRNA 9.21659 kcal/mol@LB@Unfolding Energy - sRNA 4.57003 kcal/mol@LB@@LB@Position - mRNA 114 -- 148@LB@Position - sRNA 14 -- 40@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 135 |
0.005891 |
0.146 |
b3009 |
yghB |
-12.71 |
0.045213 |
257 -- 299 |
7 -- 46 |
general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
|
_____________256_________________________________________300\n_____________|___________________________________________|\n5'-UCU...GCGCU__C__A____CA___U_________GUUUACUUU__C______G-3'\n______________GG_GG_UCCU__UAU_GUUAGCGUU_________GU_AUGUUU\n______________||_||_||||__||:_|:||||:||_________||_||||||\n______________CC_CC_AGGA__AUG_CGAUCGUAA_________CA_UACAAA\n3'-UUU...UUCCU__A__A____CC___U_________AAUACC_____A______AAGUCG-5'\n_____________|___________________________________________|\n_____________47__________________________________________6\n |
275 -- 281 |
22 -- 28 |
-27.0814 kcal/mol |
9.76724 kcal/mol |
4.60844 kcal/mol |
256 300@LB@ | |@LB@5'-UCU...GCGCU C A CA U GUUUACUUU C G-3'@LB@ GG GG UCCU UAU GUUAGCGUU GU AUGUUU@LB@ || || |||| ||: |:||||:|| || ||||||@LB@ CC CC AGGA AUG CGAUCGUAA CA UACAAA@LB@3'-UUU...UUCCU A A CC U AAUACC A AAGUCG-5'@LB@ | |@LB@ 47 6@LB@@LB@@LB@Energy -12.71 kcal/mol@LB@Hybridization Energy -27.0814 kcal/mol@LB@Unfolding Energy - mRNA 9.76724 kcal/mol@LB@Unfolding Energy - sRNA 4.60844 kcal/mol@LB@@LB@Position - mRNA 257 -- 299@LB@Position - sRNA 7 -- 46@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 67 |
0.00183 |
0.09081 |
b1607 |
ydgC |
-12.69 |
0.045650 |
228 -- 262 |
1 -- 36 |
GlpM family inner membrane protein |
|
_____________227__________________________________263\n_____________|____________________________________|\n5'-AUG...CGCUC_____________GUGCUGUUGAUUG__G_______AAAAA...CAC-3'\n______________GGUGC_GCUGGUA_____________GU_UUUUAGC\n______________|||:|_|||:|:|_____________||_|||:|||\n______________CCAUG_CGAUCGU_____________CA_AAAGUCG\n3'-UUU...AAGGA_____U_______AAAAUACCCAAUA__A_______-5'\n_____________|___________________________________|\n_____________37__________________________________1\n |
256 -- 262 |
1 -- 7 |
-24.769 kcal/mol |
10.5859 kcal/mol |
1.49509 kcal/mol |
227 263@LB@ | |@LB@5'-AUG...CGCUC GUGCUGUUGAUUG G AAAAA...CAC-3'@LB@ GGUGC GCUGGUA GU UUUUAGC@LB@ |||:| |||:|:| || |||:|||@LB@ CCAUG CGAUCGU CA AAAGUCG@LB@3'-UUU...AAGGA U AAAAUACCCAAUA A -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -12.69 kcal/mol@LB@Hybridization Energy -24.769 kcal/mol@LB@Unfolding Energy - mRNA 10.5859 kcal/mol@LB@Unfolding Energy - sRNA 1.49509 kcal/mol@LB@@LB@Position - mRNA 228 -- 262@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 85 |
0.002796 |
0.1082 |
b4536 |
yobH |
-12.68 |
0.045962 |
237 -- 287 |
1 -- 38 |
uncharacterized protein |
|
_____________236__________________________________________________288\n_____________|____________________________________________________|\n5'-CAA...UAGCA_________AUAGGAUUAUUA__C____GA______C___U__A__GGA___AAAGA...CCG-3'\n______________CUGGUAUGG____________CU_AGCG___UAUGG_GUU_UG_UU___AGC\n______________||||||::|____________||_|||:___|||||_|||_||_||___|||\n______________GACCAUGUC____________GA_UCGU___AUACC_CAA_AC_AA___UCG\n3'-UUU...CCAAG____________________________AAA_________U__A__AAG___-5'\n_____________|___________________________________________________|\n_____________39__________________________________________________1\n |
239 -- 245 |
30 -- 36 |
-25.5821 kcal/mol |
8.3664 kcal/mol |
4.54019 kcal/mol |
236 288@LB@ | |@LB@5'-CAA...UAGCA AUAGGAUUAUUA C GA C U A GGA AAAGA...CCG-3'@LB@ CUGGUAUGG CU AGCG UAUGG GUU UG UU AGC@LB@ ||||||::| || |||: ||||| ||| || || |||@LB@ GACCAUGUC GA UCGU AUACC CAA AC AA UCG@LB@3'-UUU...CCAAG AAA U A AAG -5'@LB@ | |@LB@ 39 1@LB@@LB@@LB@Energy -12.68 kcal/mol@LB@Hybridization Energy -25.5821 kcal/mol@LB@Unfolding Energy - mRNA 8.3664 kcal/mol@LB@Unfolding Energy - sRNA 4.54019 kcal/mol@LB@@LB@Position - mRNA 237 -- 287@LB@Position - sRNA 1 -- 38@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 152 |
0.007594 |
0.1679 |
b3992 |
thiF |
-12.60 |
0.047865 |
3 -- 22 |
24 -- 47 |
adenylyltransferase modifies ThiS C-terminus |
|
_____________2________________________23\n_____________|________________________|\n_________5'-GC_____________A__________CGGCA...UUA-3'\n______________AGG_GG___CUGG_ACAGCUGGCA\n______________|||_||___||||_||||||:|||\n______________UCC_CC___GACC_UGUCGAUCGU\n3'-UUU...AUUCC___A__AAG____A__________AAAAU...UCG-5'\n_____________|________________________|\n_____________48_______________________23\n |
16 -- 22 |
24 -- 30 |
-27.3128 kcal/mol |
10.1529 kcal/mol |
4.55893 kcal/mol |
2 23@LB@ | |@LB@ 5'-GC A CGGCA...UUA-3'@LB@ AGG GG CUGG ACAGCUGGCA@LB@ ||| || |||| ||||||:|||@LB@ UCC CC GACC UGUCGAUCGU@LB@3'-UUU...AUUCC A AAG A AAAAU...UCG-5'@LB@ | |@LB@ 48 23@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -27.3128 kcal/mol@LB@Unfolding Energy - mRNA 10.1529 kcal/mol@LB@Unfolding Energy - sRNA 4.55893 kcal/mol@LB@@LB@Position - mRNA 3 -- 22@LB@Position - sRNA 24 -- 47@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 182 |
0.01043 |
0.1919 |
b1235 |
rssB |
-12.59 |
0.048266 |
47 -- 57 |
25 -- 36 |
PcnB-degradosome interaction factor; response regulator |
|
_____________46___________58\n_____________|____________|\n5'-AAU...CGGCC____________AGUGG...CAA-3'\n______________GG_ACAGCUGGC\n______________||_||||||:||\n______________CC_UGUCGAUCG\n3'-UUU...AAGGA__A_________UAAAA...UCG-5'\n_____________|____________|\n_____________37___________24\n |
51 -- 57 |
25 -- 31 |
-17.7308 kcal/mol |
3.71782 kcal/mol |
1.42738 kcal/mol |
46 58@LB@ | |@LB@5'-AAU...CGGCC AGUGG...CAA-3'@LB@ GG ACAGCUGGC@LB@ || ||||||:||@LB@ CC UGUCGAUCG@LB@3'-UUU...AAGGA A UAAAA...UCG-5'@LB@ | |@LB@ 37 24@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -17.7308 kcal/mol@LB@Unfolding Energy - mRNA 3.71782 kcal/mol@LB@Unfolding Energy - sRNA 1.42738 kcal/mol@LB@@LB@Position - mRNA 47 -- 57@LB@Position - sRNA 25 -- 36@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 169 |
0.009174 |
0.1803 |
b1467 |
narY |
-12.55 |
0.049142 |
183 -- 194 |
25 -- 36 |
nitrate reductase 2 (NRZ) beta subunit |
|
_____________182__________195\n_____________|____________|\n5'-CGC...GAUCA_______GA___GAAAA...GCG-3'\n______________GGUACAG__GGC\n______________|||||||__:||\n______________CCAUGUC__UCG\n3'-UUU...AAGGA_______GA___UAAAA...UCG-5'\n_____________|____________|\n_____________37___________24\n |
183 -- 189 |
30 -- 36 |
-16.0252 kcal/mol |
2.04549 kcal/mol |
1.42738 kcal/mol |
182 195@LB@ | |@LB@5'-CGC...GAUCA GA GAAAA...GCG-3'@LB@ GGUACAG GGC@LB@ ||||||| :||@LB@ CCAUGUC UCG@LB@3'-UUU...AAGGA GA UAAAA...UCG-5'@LB@ | |@LB@ 37 24@LB@@LB@@LB@Energy -12.55 kcal/mol@LB@Hybridization Energy -16.0252 kcal/mol@LB@Unfolding Energy - mRNA 2.04549 kcal/mol@LB@Unfolding Energy - sRNA 1.42738 kcal/mol@LB@@LB@Position - mRNA 183 -- 194@LB@Position - sRNA 25 -- 36@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 30 -- 36@LB@ |
