| 167 |
0.007775 |
0.1751 |
bsu09889 |
yhzD |
-15.75 |
0.023145 |
43 -- 92 |
39 -- 89 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________42____________________________________________________93\n_____________|_____________________________________________________|\n5'-GGA...CUCCA____U_______AC______AAUU_______C___A____C____C_______UGACC...GUG-3'\n______________AAUG_CUUCGUU__GUGAUC____GUAAGCA__UG_AUCU__CUC___UUCCC\n______________||||_|||||||__|::|||____|:||:||__:|_|:|:__|||___|||||\n______________UUAC_GAAGCAA__CGUUAG____CGUUUGU__GC_UGGG__GAG___AAGGG\n3'-AUU...AUUAC____C_______________AAC________UA__A____UA___AAU_____GUAAA...CAA-5'\n_____________|_____________________________________________________|\n_____________90____________________________________________________38\n |
67 -- 73 |
62 -- 68 |
-30.4166 kcal/mol |
5.34264 kcal/mol |
10.926 kcal/mol |
42 93@LB@ | |@LB@5'-GGA...CUCCA U AC AAUU C A C C UGACC...GUG-3'@LB@ AAUG CUUCGUU GUGAUC GUAAGCA UG AUCU CUC UUCCC@LB@ |||| ||||||| |::||| |:||:|| :| |:|: ||| |||||@LB@ UUAC GAAGCAA CGUUAG CGUUUGU GC UGGG GAG AAGGG@LB@3'-AUU...AUUAC C AAC UA A UA AAU GUAAA...CAA-5'@LB@ | |@LB@ 90 38@LB@@LB@@LB@Energy -15.75 kcal/mol@LB@Hybridization Energy -30.4166 kcal/mol@LB@Unfolding Energy - mRNA 5.34264 kcal/mol@LB@Unfolding Energy - sRNA 10.926 kcal/mol@LB@@LB@Position - mRNA 43 -- 92@LB@Position - sRNA 39 -- 89@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 175 |
0.008121 |
0.1751 |
bsu19160 |
yocC |
-10.77 |
0.229075 |
5 -- 48 |
34 -- 79 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________4_________________________________________________49\n_____________|_________________________________________________|\n_______5'-UAAU___U_____AAUG___U________________CG_______CUU____ACAGG...UAU-3'\n______________UUG_UAAUC_____AA_CAAUCG___CCA_UUC__AUUCCUC___UUUC\n______________|||_:||||_____||_||||||___|||_:||__|||||:|___||||\n______________AAC_GUUAG_____UU_GUUAGC___GGU_GAG__UAAGGGG___AAAG\n3'-AUU...GAAGC_________AACCG__U______AUG___A___AA_______U______AAACU...CAA-5'\n_____________|_________________________________________________|\n_____________80________________________________________________33\n |
35 -- 41 |
39 -- 45 |
-25.1951 kcal/mol |
3.86331 kcal/mol |
13.8007 kcal/mol |
4 49@LB@ | |@LB@ 5'-UAAU U AAUG U CG CUU ACAGG...UAU-3'@LB@ UUG UAAUC AA CAAUCG CCA UUC AUUCCUC UUUC@LB@ ||| :|||| || |||||| ||| :|| |||||:| ||||@LB@ AAC GUUAG UU GUUAGC GGU GAG UAAGGGG AAAG@LB@3'-AUU...GAAGC AACCG U AUG A AA U AAACU...CAA-5'@LB@ | |@LB@ 80 33@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -25.1951 kcal/mol@LB@Unfolding Energy - mRNA 3.86331 kcal/mol@LB@Unfolding Energy - sRNA 13.8007 kcal/mol@LB@@LB@Position - mRNA 5 -- 48@LB@Position - sRNA 34 -- 79@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 187 |
0.008608 |
0.1751 |
bsu17960 |
yneK |
-9.96 |
0.317804 |
143 -- 172 |
155 -- 184 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________142___________173\n_____________|_____________|\n5'-AGU...AAUCU________AU___AUAUG...UAA-3'\n______________CUCUUCGU__ACA\n______________||||||:|__|||\n______________GAGAAGUA__UGU\n3'-AUU...AAAAU________GU___CCUGU...CAA-5'\n_____________|_____________|\n_____________185___________154\n |
161 -- 167 |
160 -- 166 |
-12.096 kcal/mol |
1.39305 kcal/mol |
1.41024 kcal/mol |
142 173@LB@ | |@LB@5'-AGU...AAUCU AU AUAUG...UAA-3'@LB@ CUCUUCGU ACA@LB@ ||||||:| |||@LB@ GAGAAGUA UGU@LB@3'-AUU...AAAAU GU CCUGU...CAA-5'@LB@ | |@LB@ 185 154@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -12.096 kcal/mol@LB@Unfolding Energy - mRNA 1.39305 kcal/mol@LB@Unfolding Energy - sRNA 1.41024 kcal/mol@LB@@LB@Position - mRNA 143 -- 172@LB@Position - sRNA 155 -- 184@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 160 -- 166@LB@ |
| 191 |
0.008727 |
0.1751 |
bsu31280 |
yugU |
-11.72 |
0.152832 |
2 -- 31 |
120 -- 152 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________1___________________________________32\n_____________|___________________________________|\n__________5'-A_______AA__GA______________________CAUCA...GCG-3'\n______________AUAUUGA__CA__G_CCGCA_CAAG___CAUAUGA\n______________|:|||||__||__|_|||||_||||___|||||:|\n______________UGUAACU__GU__C_GGCGU_GUUC___GUAUAUU\n3'-AUU...UGUCC___________AA_A_____C____AAG_______ACAAC...CAA-5'\n_____________|___________________________________|\n_____________153_________________________________119\n |
25 -- 31 |
120 -- 126 |
-21.956 kcal/mol |
3.20784 kcal/mol |
9.17624 kcal/mol |
1 32@LB@ | |@LB@ 5'-A AA GA CAUCA...GCG-3'@LB@ AUAUUGA CA G CCGCA CAAG CAUAUGA@LB@ |:||||| || | ||||| |||| |||||:|@LB@ UGUAACU GU C GGCGU GUUC GUAUAUU@LB@3'-AUU...UGUCC AA A C AAG ACAAC...CAA-5'@LB@ | |@LB@ 153 119@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -21.956 kcal/mol@LB@Unfolding Energy - mRNA 3.20784 kcal/mol@LB@Unfolding Energy - sRNA 9.17624 kcal/mol@LB@@LB@Position - mRNA 2 -- 31@LB@Position - sRNA 120 -- 152@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 120 -- 126@LB@ |
| 11 |
0.0003253 |
0.1011 |
bsu31319 |
yuzI |
-20.00 |
0.002830 |
16 -- 82 |
99 -- 165 |
Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 16704729; Product type f : factor |
|
_____________15______________________________________________________________________83\n_____________|_______________________________________________________________________|\n5'-UAA...CAGUC_____U___UUC__U_G___________G_U____U______UUUUCCUCACUC_________A__G____CAUCA...ACU-3'\n______________CUUCA_UCA___GG_C_AUUG_C__UGU_C_CAGC__GUUCC____________GUCACUUUC_UA_CUUC\n______________|||||_|||___||_|_||||_|__|||_|_||||__|||||____________|||||||||_:|_||||\n______________GAAGU_AGU___CC_G_UAAC_G__ACA_G_GUCG__CAAGG____________CAGUGAAAG_GU_GAAG\n3'-AUU...AAUGA_________UGU__U______U_UA___G_C____UU_____UAUAUUACAA___________A__A____UUUCA...CAA-5'\n_____________|_______________________________________________________________________|\n_____________166_____________________________________________________________________98\n |
68 -- 74 |
107 -- 113 |
-43.9371 kcal/mol |
8.77558 kcal/mol |
17.9339 kcal/mol |
15 83@LB@ | |@LB@5'-UAA...CAGUC U UUC U G G U U UUUUCCUCACUC A G CAUCA...ACU-3'@LB@ CUUCA UCA GG C AUUG C UGU C CAGC GUUCC GUCACUUUC UA CUUC@LB@ ||||| ||| || | |||| | ||| | |||| ||||| ||||||||| :| ||||@LB@ GAAGU AGU CC G UAAC G ACA G GUCG CAAGG CAGUGAAAG GU GAAG@LB@3'-AUU...AAUGA UGU U U UA G C UU UAUAUUACAA A A UUUCA...CAA-5'@LB@ | |@LB@ 166 98@LB@@LB@@LB@Energy -20.00 kcal/mol@LB@Hybridization Energy -43.9371 kcal/mol@LB@Unfolding Energy - mRNA 8.77558 kcal/mol@LB@Unfolding Energy - sRNA 17.9339 kcal/mol@LB@@LB@Position - mRNA 16 -- 82@LB@Position - sRNA 99 -- 165@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 107 -- 113@LB@ |
| 54 |
0.001793 |
0.1212 |
bsu21030 |
yonP |
-11.11 |
0.198660 |
20 -- 36 |
161 -- 178 |
Evidence 5: No homology to any previously reported sequences |
|
_____________19_______37\n_____________|________|\n5'-AAU...UUUAA________AUAUU...ACA-3'\n______________ACUCUUUA\n______________||||||:|\n______________UGAGAAGU\n3'-AUU...AAAAA________AGUUG...CAA-5'\n_____________|________|\n_____________179______160\n |
30 -- 36 |
161 -- 167 |
-8.6372 kcal/mol |
0.252156 kcal/mol |
0.576912 kcal/mol |
19 37@LB@ | |@LB@5'-AAU...UUUAA AUAUU...ACA-3'@LB@ ACUCUUUA@LB@ ||||||:|@LB@ UGAGAAGU@LB@3'-AUU...AAAAA AGUUG...CAA-5'@LB@ | |@LB@ 179 160@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -8.6372 kcal/mol@LB@Unfolding Energy - mRNA 0.252156 kcal/mol@LB@Unfolding Energy - sRNA 0.576912 kcal/mol@LB@@LB@Position - mRNA 20 -- 36@LB@Position - sRNA 161 -- 178@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 161 -- 167@LB@ |
| 77 |
0.002638 |
0.1315 |
bsu36790 |
ywmA |
-11.30 |
0.183092 |
1 -- 48 |
33 -- 81 |
Evidence 5: No homology to any previously reported sequences |
|
_____________0_______________49\n_____________|_______________|\n5'-CGA...GUUCA_______________AUAUA...GAC-3'\n______________UACCC_UUUCUUAUU\n______________|||||_|:|||||||\n______________AUGGG_AGAGAAUAA\n3'-AUU...UUAGC_____U_________GGGGU...CAA-5'\n_____________|_______________|\n_____________82______________32\n |
65 -- 71 |
43 -- 49 |
-14.8917 kcal/mol |
3.00255 kcal/mol |
4.80466 kcal/mol |
0 49@LB@ | |@LB@5'-CGA...GUUCA AUAUA...GAC-3'@LB@ UACCC UUUCUUAUU@LB@ ||||| |:|||||||@LB@ AUGGG AGAGAAUAA@LB@3'-AUU...UUAGC U GGGGU...CAA-5'@LB@ | |@LB@ 82 32@LB@@LB@@LB@Energy -11.30 kcal/mol@LB@Hybridization Energy -14.8917 kcal/mol@LB@Unfolding Energy - mRNA 3.00255 kcal/mol@LB@Unfolding Energy - sRNA 4.80466 kcal/mol@LB@@LB@Position - mRNA 1 -- 48@LB@Position - sRNA 33 -- 81@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 111 |
0.004819 |
0.1671 |
bsu32120 |
yuzG |
-7.22 |
0.752372 |
165 -- 182 |
149 -- 166 |
Evidence 5: No homology to any previously reported sequences |
|
_____________164______________________________________183\n_____________|________________________________________|\n5'-UAG...UCUUU_____A_G_ACA__G__AAG__A________GAUG_____AAACG...UGG-3'\n______________AUGGC_U_G___UG_GA____G_GCGAAUAA____GCCCA\n______________|||||_|_|___||_:|____|_||:||:||____:||||\n______________UACCG_A_C___AC_UU____C_CGUUUGUU____UGGGU\n3'-AUU...UUACU_____A_G_A____G__AGAA__________AGCA_____AGAGA...CAA-5'\n_____________|________________________________________|\n_____________167______________________________________148\n |
192 -- 198 |
62 -- 68 |
-24.2214 kcal/mol |
8.24153 kcal/mol |
10.1588 kcal/mol |
164 183@LB@ | |@LB@5'-UAG...UCUUU A G ACA G AAG A GAUG AAACG...UGG-3'@LB@ AUGGC U G UG GA G GCGAAUAA GCCCA@LB@ ||||| | | || :| | ||:||:|| :||||@LB@ UACCG A C AC UU C CGUUUGUU UGGGU@LB@3'-AUU...UUACU A G A G AGAA AGCA AGAGA...CAA-5'@LB@ | |@LB@ 167 148@LB@@LB@@LB@Energy -7.22 kcal/mol@LB@Hybridization Energy -24.2214 kcal/mol@LB@Unfolding Energy - mRNA 8.24153 kcal/mol@LB@Unfolding Energy - sRNA 10.1588 kcal/mol@LB@@LB@Position - mRNA 165 -- 182@LB@Position - sRNA 149 -- 166@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 143 |
0.006663 |
0.1741 |
bsu05790 |
ydhK |
-18.88 |
0.004963 |
179 -- 222 |
125 -- 163 |
Evidence 5: No homology to any previously reported sequences |
|
_____________178__________________________________________223\n_____________|____________________________________________|\n5'-GUG...UAGUA_______G_______GUUUU____________G__AA___UA__GGAAA...UUU-3'\n______________UUAUCGA_AGGGCAU_____CAUUGUCUGCGG_CA__AGU__CA\n______________|:|||:|_|||:|||_____|||||||:||:|_||__|||__||\n______________AGUAGUU_UCCUGUA_____GUAACAGGCGUC_GU__UCA__GU\n3'-AUU...UGAGA_______G_______ACU______________________AG__AUAUU...CAA-5'\n_____________|____________________________________________|\n_____________164__________________________________________124\n |
204 -- 210 |
134 -- 140 |
-40.9125 kcal/mol |
11.6904 kcal/mol |
10.3584 kcal/mol |
178 223@LB@ | |@LB@5'-GUG...UAGUA G GUUUU G AA UA GGAAA...UUU-3'@LB@ UUAUCGA AGGGCAU CAUUGUCUGCGG CA AGU CA@LB@ |:|||:| |||:||| |||||||:||:| || ||| ||@LB@ AGUAGUU UCCUGUA GUAACAGGCGUC GU UCA GU@LB@3'-AUU...UGAGA G ACU AG AUAUU...CAA-5'@LB@ | |@LB@ 164 124@LB@@LB@@LB@Energy -18.88 kcal/mol@LB@Hybridization Energy -40.9125 kcal/mol@LB@Unfolding Energy - mRNA 11.6904 kcal/mol@LB@Unfolding Energy - sRNA 10.3584 kcal/mol@LB@@LB@Position - mRNA 179 -- 222@LB@Position - sRNA 125 -- 163@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 134 -- 140@LB@ |
| 4 |
0.0001192 |
0.08823 |
bsu12150 |
yjgB |
-21.60 |
0.001260 |
37 -- 72 |
32 -- 79 |
Evidence 5: No homology to any previously reported sequences; PubMedId: 1580552 |
|
_____________36_______________________________________________73\n_____________|________________________________________________|\n5'-CCU...UGUGA____UU_____C____________________C_______________GCUUU...CAG-3'\n______________UUGU__UCUUG_CAG__________CCAUCUC__AUUCCCC_UUUCUU\n______________|||:__|||||_||:__________|||||||__|||||||_||||||\n______________AACG__AGAAC_GUU__________GGUAGAG__UAAGGGG_AAAGAA\n3'-AUU...GAAGC____UU_____C___UGUUAGCAUG_______AA_______U______ACUUU...CAA-5'\n_____________|________________________________________________|\n_____________80_______________________________________________31\n |
60 -- 66 |
39 -- 45 |
-34.5565 kcal/mol |
2.03428 kcal/mol |
13.9015 kcal/mol |
36 73@LB@ | |@LB@5'-CCU...UGUGA UU C C GCUUU...CAG-3'@LB@ UUGU UCUUG CAG CCAUCUC AUUCCCC UUUCUU@LB@ |||: ||||| ||: ||||||| ||||||| ||||||@LB@ AACG AGAAC GUU GGUAGAG UAAGGGG AAAGAA@LB@3'-AUU...GAAGC UU C UGUUAGCAUG AA U ACUUU...CAA-5'@LB@ | |@LB@ 80 31@LB@@LB@@LB@Energy -21.60 kcal/mol@LB@Hybridization Energy -34.5565 kcal/mol@LB@Unfolding Energy - mRNA 2.03428 kcal/mol@LB@Unfolding Energy - sRNA 13.9015 kcal/mol@LB@@LB@Position - mRNA 37 -- 72@LB@Position - sRNA 32 -- 79@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 39 -- 45@LB@ |
