| 43 |
0.00135 |
0.1206 |
bsu10230 |
yhfH |
-10.18 |
0.291514 |
18 -- 110 |
27 -- 139 |
Evidence 6: Doubtful CDS |
|
_____________17_____________________________________________________________________________________________________________________111\n_____________|______________________________________________________________________________________________________________________|\n5'-CAU...GAAAA____CAU________________C_____A______A________________UCCUC_______________UU____AA_____GU___CC___AAUAUA_________C______AAAGC...AUG-3'\n______________CCGC___AGCA___UCCG_AUAA___UGU_ACUUUC____________UAAUG_____CU________AUCUU__CAAA__AAUUG__CCU__UUC______CCCAUUUUU_UUGAAA\n______________||||___||||___|||:_||||___|||_||||||____________|||||_____||________|||||__||||__|||:|__||:__:||______|||||||:|_||||||\n______________GGCG___UCGU___AGGU_UAUU___ACA_UGAAAG____________AUUAC_____GA________UAGAA__GUUU__UUAGC__GGG__GAG______GGGUAAAGA_AACUUU\n3'-AUU...UAACA___________UCA____A____ACA___G______AGUAGAAGUUUC_____UUACC__AGCAACGU_____CC____G______AU___UA___AAUAAG________________AAACU...CAA-5'\n_____________|______________________________________________________________________________________________________________________|\n_____________140____________________________________________________________________________________________________________________26\n |
96 -- 102 |
34 -- 40 |
-47.8615 kcal/mol |
11.539 kcal/mol |
28.2686 kcal/mol |
17 111@LB@ | |@LB@5'-CAU...GAAAA CAU C A A UCCUC UU AA GU CC AAUAUA C AAAGC...AUG-3'@LB@ CCGC AGCA UCCG AUAA UGU ACUUUC UAAUG CU AUCUU CAAA AAUUG CCU UUC CCCAUUUUU UUGAAA@LB@ |||| |||| |||: |||| ||| |||||| ||||| || ||||| |||| |||:| ||: :|| |||||||:| ||||||@LB@ GGCG UCGU AGGU UAUU ACA UGAAAG AUUAC GA UAGAA GUUU UUAGC GGG GAG GGGUAAAGA AACUUU@LB@3'-AUU...UAACA UCA A ACA G AGUAGAAGUUUC UUACC AGCAACGU CC G AU UA AAUAAG AAACU...CAA-5'@LB@ | |@LB@ 140 26@LB@@LB@@LB@Energy -10.18 kcal/mol@LB@Hybridization Energy -47.8615 kcal/mol@LB@Unfolding Energy - mRNA 11.539 kcal/mol@LB@Unfolding Energy - sRNA 28.2686 kcal/mol@LB@@LB@Position - mRNA 18 -- 110@LB@Position - sRNA 27 -- 139@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 114 |
0.005219 |
0.1741 |
bsu18630 |
exlX |
-14.36 |
0.045196 |
231 -- 263 |
38 -- 88 |
expansin-YoaJ |
|
_____________230________________________________________________________264\n_____________|__________________________________________________________|\n5'-GGG...AGAUC_______CA_______GUA________UU________U____________________CAAGC...GUU-3'\n______________AUGAGUG__UUUGUUG___UGGUUUUG___GACGAUC___UCUGUUUU____UCCCCG\n______________||||:||__||:||||___:::|:|||___:||:|||___:|::|:|:____|||||:\n______________UACUUAC__AAGCAAC___GUUAGAAC___UUGUUAG___GGGUAGAG____AGGGGU\n3'-AUU...UUCAU_______CG__________________CGU_______CAU________AAUA______AAAGA...CAA-5'\n_____________|__________________________________________________________|\n_____________89_________________________________________________________37\n |
242 -- 248 |
59 -- 65 |
-36.6264 kcal/mol |
9.40493 kcal/mol |
14.3562 kcal/mol |
230 264@LB@ | |@LB@5'-GGG...AGAUC CA GUA UU U CAAGC...GUU-3'@LB@ AUGAGUG UUUGUUG UGGUUUUG GACGAUC UCUGUUUU UCCCCG@LB@ ||||:|| ||:|||| :::|:||| :||:||| :|::|:|: |||||:@LB@ UACUUAC AAGCAAC GUUAGAAC UUGUUAG GGGUAGAG AGGGGU@LB@3'-AUU...UUCAU CG CGU CAU AAUA AAAGA...CAA-5'@LB@ | |@LB@ 89 37@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -36.6264 kcal/mol@LB@Unfolding Energy - mRNA 9.40493 kcal/mol@LB@Unfolding Energy - sRNA 14.3562 kcal/mol@LB@@LB@Position - mRNA 231 -- 263@LB@Position - sRNA 38 -- 88@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 194 |
0.008808 |
0.1751 |
bsu16370 |
fliR |
-9.70 |
0.351361 |
227 -- 250 |
157 -- 179 |
flagellar biosynthetic protein FliR |
|
_____________226____________________________________251\n_____________|______________________________________|\n5'-UAU...CGACA____AA____CAGG________U________UAU____AAAAU...UGC-3'\n______________ACUC___AUC____AACA_GAC_UUGGCGUU___UCCG\n______________||||___|||____||||_|||_|||:|:||___||||\n______________UGAG___UAG____UUGU_CUG_AACUGUAA___AGGC\n3'-AUU...AAAAA____AAG___________C___U________C______GUCGU...CAA-5'\n_____________|______________________________________|\n_____________180____________________________________156\n |
69 -- 75 |
142 -- 148 |
-23.642 kcal/mol |
8.17018 kcal/mol |
7.49537 kcal/mol |
226 251@LB@ | |@LB@5'-UAU...CGACA AA CAGG U UAU AAAAU...UGC-3'@LB@ ACUC AUC AACA GAC UUGGCGUU UCCG@LB@ |||| ||| |||| ||| |||:|:|| ||||@LB@ UGAG UAG UUGU CUG AACUGUAA AGGC@LB@3'-AUU...AAAAA AAG C U C GUCGU...CAA-5'@LB@ | |@LB@ 180 156@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -23.642 kcal/mol@LB@Unfolding Energy - mRNA 8.17018 kcal/mol@LB@Unfolding Energy - sRNA 7.49537 kcal/mol@LB@@LB@Position - mRNA 227 -- 250@LB@Position - sRNA 157 -- 179@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 142 -- 148@LB@ |
| 172 |
0.008071 |
0.1751 |
bsu03860 |
ycnD |
-16.76 |
0.014170 |
153 -- 167 |
135 -- 149 |
FMN reductase |
|
_____________152_____________168\n_____________|_______________|\n5'-CGC...UCCUC_______________CAGAG...CGG-3'\n______________UUGAUGUUGUCCGCA\n______________||||::|||||||||\n______________AACUGUAACAGGCGU\n3'-AUU...CCUGU_______________CGUUC...CAA-5'\n_____________|_______________|\n_____________150_____________134\n |
161 -- 167 |
135 -- 141 |
-23.0656 kcal/mol |
2.48067 kcal/mol |
5.52377 kcal/mol |
152 168@LB@ | |@LB@5'-CGC...UCCUC CAGAG...CGG-3'@LB@ UUGAUGUUGUCCGCA@LB@ ||||::|||||||||@LB@ AACUGUAACAGGCGU@LB@3'-AUU...CCUGU CGUUC...CAA-5'@LB@ | |@LB@ 150 134@LB@@LB@@LB@Energy -16.76 kcal/mol@LB@Hybridization Energy -23.0656 kcal/mol@LB@Unfolding Energy - mRNA 2.48067 kcal/mol@LB@Unfolding Energy - sRNA 5.52377 kcal/mol@LB@@LB@Position - mRNA 153 -- 167@LB@Position - sRNA 135 -- 149@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 135 -- 141@LB@ |
| 121 |
0.005491 |
0.1741 |
bsu40190 |
fbp |
-16.50 |
0.016068 |
67 -- 83 |
53 -- 69 |
fructose-1 6-bisphosphatase |
|
_____________66________________84\n_____________|_________________|\n5'-AAA...AAUGA___________U_____UAAAC...GCA-3'\n______________GGCAAACAAUC_UACCC\n______________|||||||||||_|||||\n______________CCGUUUGUUAG_AUGGG\n3'-AUU...UAGAA___________C_____UAGAG...CAA-5'\n_____________|_________________|\n_____________70________________52\n |
71 -- 77 |
59 -- 65 |
-25.6398 kcal/mol |
2.55798 kcal/mol |
7.79863 kcal/mol |
66 84@LB@ | |@LB@5'-AAA...AAUGA U UAAAC...GCA-3'@LB@ GGCAAACAAUC UACCC@LB@ ||||||||||| |||||@LB@ CCGUUUGUUAG AUGGG@LB@3'-AUU...UAGAA C UAGAG...CAA-5'@LB@ | |@LB@ 70 52@LB@@LB@@LB@Energy -16.50 kcal/mol@LB@Hybridization Energy -25.6398 kcal/mol@LB@Unfolding Energy - mRNA 2.55798 kcal/mol@LB@Unfolding Energy - sRNA 7.79863 kcal/mol@LB@@LB@Position - mRNA 67 -- 83@LB@Position - sRNA 53 -- 69@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 29 |
0.000814 |
0.1059 |
bsu35860 |
pgdS |
-7.84 |
0.648005 |
23 -- 34 |
130 -- 140 |
gamma-dl-glutamyl hydrolase |
|
______________23________________________________35\n______________|_________________________________|\n___________5'-________GGAAAUGAAUAAAA___A________AAGAA...AUA-3'\n______________AUUGAUAU______________UCC_GCAGCAGG\n______________|||||:||______________|||_||||||:|\n______________UAACUGUA______________AGG_CGUCGUUC\n3'-AUU...UCCUG________AC________________________AAGGU...CAA-5'\n_____________|__________________________________|\n_____________141________________________________129\n |
28 -- 34 |
130 -- 136 |
-20.8842 kcal/mol |
7.79874 kcal/mol |
6.50607 kcal/mol |
23 35@LB@ | |@LB@ 5'- GGAAAUGAAUAAAA A AAGAA...AUA-3'@LB@ AUUGAUAU UCC GCAGCAGG@LB@ |||||:|| ||| ||||||:|@LB@ UAACUGUA AGG CGUCGUUC@LB@3'-AUU...UCCUG AC AAGGU...CAA-5'@LB@ | |@LB@ 141 129@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -20.8842 kcal/mol@LB@Unfolding Energy - mRNA 7.79874 kcal/mol@LB@Unfolding Energy - sRNA 6.50607 kcal/mol@LB@@LB@Position - mRNA 23 -- 34@LB@Position - sRNA 130 -- 140@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 130 -- 136@LB@ |
| 88 |
0.003231 |
0.1423 |
bsu34620 |
mdxD |
-9.76 |
0.344052 |
128 -- 173 |
81 -- 130 |
glucan 1 4-alpha-maltohexaosidase |
|
_____________127____________174\n_____________|______________|\n5'-GUU...AUGCA__GA_______C__GCCAU...GUG-3'\n______________GC__UUCAUCA_CA\n______________:|__|||||||_||\n______________UG__AAGUAGU_GU\n3'-AUU...AAAAA__AG_______U__CCUGU...CAA-5'\n_____________|______________|\n_____________131____________80\n |
220 -- 226 |
158 -- 164 |
-10.4913 kcal/mol |
1.73429 kcal/mol |
1.41528 kcal/mol |
127 174@LB@ | |@LB@5'-GUU...AUGCA GA C GCCAU...GUG-3'@LB@ GC UUCAUCA CA@LB@ :| ||||||| ||@LB@ UG AAGUAGU GU@LB@3'-AUU...AAAAA AG U CCUGU...CAA-5'@LB@ | |@LB@ 131 80@LB@@LB@@LB@Energy -9.76 kcal/mol@LB@Hybridization Energy -10.4913 kcal/mol@LB@Unfolding Energy - mRNA 1.73429 kcal/mol@LB@Unfolding Energy - sRNA 1.41528 kcal/mol@LB@@LB@Position - mRNA 128 -- 173@LB@Position - sRNA 81 -- 130@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 158 -- 164@LB@ |
| 89 |
0.003315 |
0.1443 |
bsu30460 |
ytrA |
-11.86 |
0.143485 |
75 -- 137 |
74 -- 137 |
GntR family transcriptional regulator |
|
_____________74__________________________________________________________________138\n_____________|___________________________________________________________________|\n5'-UUU...UGAUU_______________AUCGC_____CU_______U_G___UU________UC_______AAUG____AAAAG...AUA-3'\n______________GCGGCA___UCUGUG_____UUGUU__UUUUUUC_U_UUC___GUGAUGA__GGUUUUG____GCAA\n______________||:|||___||::|:_____||||:__:|||:||_|_|||___||:||||__||:||:|____||||\n______________CGUCGU___AGGUAU_____AACAG__GAAAGAG_A_AAG___CAUUACU__CCGAAGC____CGUU\n3'-AUU...ACAGG______UCA______AUUAC_____U________U_G___UUU_______UA_______AA______AGAAC...CAA-5'\n_____________|___________________________________________________________________|\n_____________138_________________________________________________________________73\n |
123 -- 129 |
80 -- 86 |
-41.3024 kcal/mol |
16.5538 kcal/mol |
14.8582 kcal/mol |
74 138@LB@ | |@LB@5'-UUU...UGAUU AUCGC CU U G UU UC AAUG AAAAG...AUA-3'@LB@ GCGGCA UCUGUG UUGUU UUUUUUC U UUC GUGAUGA GGUUUUG GCAA@LB@ ||:||| ||::|: ||||: :|||:|| | ||| ||:|||| ||:||:| ||||@LB@ CGUCGU AGGUAU AACAG GAAAGAG A AAG CAUUACU CCGAAGC CGUU@LB@3'-AUU...ACAGG UCA AUUAC U U G UUU UA AA AGAAC...CAA-5'@LB@ | |@LB@ 138 73@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -41.3024 kcal/mol@LB@Unfolding Energy - mRNA 16.5538 kcal/mol@LB@Unfolding Energy - sRNA 14.8582 kcal/mol@LB@@LB@Position - mRNA 75 -- 137@LB@Position - sRNA 74 -- 137@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 152 |
0.006831 |
0.1741 |
bsu09480 |
yhdI |
-9.89 |
0.327778 |
76 -- 101 |
102 -- 130 |
GntR family transcriptional regulator |
bsu05240 |
_____________75__________________________102\n_____________|___________________________|\n5'-UCU...UAAUU___________A________C______AUCCC...CAA-3'\n______________GUUUCAUAUGG_____UCAU_UUCUCA\n______________|||:|||||::_____|||:_||||||\n______________CAAGGUAUAUU_____AGUG_AAGAGU\n3'-AUU...UCGUU___________ACAAC____A______AGAAG...CAA-5'\n_____________|___________________________|\n_____________131_________________________101\n |
79 -- 85 |
121 -- 127 |
-18.1477 kcal/mol |
2.87073 kcal/mol |
6.25825 kcal/mol |
75 102@LB@ | |@LB@5'-UCU...UAAUU A C AUCCC...CAA-3'@LB@ GUUUCAUAUGG UCAU UUCUCA@LB@ |||:|||||:: |||: ||||||@LB@ CAAGGUAUAUU AGUG AAGAGU@LB@3'-AUU...UCGUU ACAAC A AGAAG...CAA-5'@LB@ | |@LB@ 131 101@LB@@LB@@LB@Energy -9.89 kcal/mol@LB@Hybridization Energy -18.1477 kcal/mol@LB@Unfolding Energy - mRNA 2.87073 kcal/mol@LB@Unfolding Energy - sRNA 6.25825 kcal/mol@LB@@LB@Position - mRNA 76 -- 101@LB@Position - sRNA 102 -- 130@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 121 -- 127@LB@ |
| 185 |
0.008526 |
0.1751 |
bsu02370 |
ybgA |
-10.25 |
0.283898 |
252 -- 276 |
59 -- 82 |
GntR family transcriptional regulator |
|
_____________251_________________________277\n_____________|___________________________|\n5'-GAU...UUAAA___G____AAU___A____________AGCUG...UUU-3'\n______________UCG__GCA___AUC__GGCGAAUGAUC\n______________|||__|||___|||__|||:||::|||\n______________AGC__CGU___UAG__CCGUUUGUUAG\n3'-AUU...ACCGA___AA_________AA___________CAUGG...CAA-5'\n_____________|___________________________|\n_____________83__________________________58\n |
266 -- 272 |
63 -- 69 |
-19.3785 kcal/mol |
3.33361 kcal/mol |
6.42004 kcal/mol |
251 277@LB@ | |@LB@5'-GAU...UUAAA G AAU A AGCUG...UUU-3'@LB@ UCG GCA AUC GGCGAAUGAUC@LB@ ||| ||| ||| |||:||::|||@LB@ AGC CGU UAG CCGUUUGUUAG@LB@3'-AUU...ACCGA AA AA CAUGG...CAA-5'@LB@ | |@LB@ 83 58@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -19.3785 kcal/mol@LB@Unfolding Energy - mRNA 3.33361 kcal/mol@LB@Unfolding Energy - sRNA 6.42004 kcal/mol@LB@@LB@Position - mRNA 252 -- 276@LB@Position - sRNA 59 -- 82@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 63 -- 69@LB@ |
