| 98 |
0.003906 |
0.1544 |
bsu29990 |
pbuO |
-11.33 |
0.180719 |
218 -- 233 |
123 -- 137 |
guanine/hypoxanthine permease PbuO |
|
_____________217______________234\n_____________|________________|\n5'-GGU...AAAGA_______ACA______AAGCA...CGG-3'\n______________GCAGCAA___UCCAUA\n______________|||||||___||||||\n______________CGUCGUU___AGGUAU\n3'-AUU...ACAGG_______CA_______AUUAC...CAA-5'\n_____________|________________|\n_____________138______________122\n |
218 -- 224 |
131 -- 137 |
-16.3971 kcal/mol |
2.46726 kcal/mol |
3.21202 kcal/mol |
217 234@LB@ | |@LB@5'-GGU...AAAGA ACA AAGCA...CGG-3'@LB@ GCAGCAA UCCAUA@LB@ ||||||| ||||||@LB@ CGUCGUU AGGUAU@LB@3'-AUU...ACAGG CA AUUAC...CAA-5'@LB@ | |@LB@ 138 122@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -16.3971 kcal/mol@LB@Unfolding Energy - mRNA 2.46726 kcal/mol@LB@Unfolding Energy - sRNA 3.21202 kcal/mol@LB@@LB@Position - mRNA 218 -- 233@LB@Position - sRNA 123 -- 137@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 131 -- 137@LB@ |
| 5 |
0.0001198 |
0.08823 |
bsu33680 |
yvaP |
-23.88 |
0.000393 |
26 -- 134 |
34 -- 167 |
HTH-type transcriptional regulator YvaP |
|
_____________25___________________________________________________________________________________________________________________________________________________________135\n_____________|____________________________________________________________________________________________________________________________________________________________|\n5'-UUU...AACAU_______A______________AAA____________AUA________________A_______________AGCAAAAAAAC__________C_____C__UC______C___________CU____A______AUCAAUC______________CAUGC...CGC-3'\n______________CUC_UCA__AGCAGGAUAUUGA_____UCU_CAGCAA___CU___________UCG_UUUUUUGUCUUCAGA___________GC______GC__UCUU__C__AUAAUC___CCUGUUUCU__UUCU_UAUUUU______________ACGCUUG\n______________|||_|||__|:|||||:|||||_____||:_||||||___|:___________||:_|||:|::||||||:|___________||______||__||||__|__|:||||___||::|:|||__|||:_:||||:______________||||||:\n______________GAG_AGU__UUGUCCUGUAACU_____AGG_GUCGUU___GG___________AGU_AAAGAGUAGAAGUUU___________CG______CG__AGAA__G__UGUUAG___GGGUAGAGA__AAGG_GUAAAG______________UGCGAAU\n3'-AUU...AAAAU___A___AG_____________GUAAC___C______CAA__UAUAUUACAAC___G_______________CAUUACUUAC___AAGCAA__UU____CC_UU______CAU_________AU____G______AAACUUUAAACUUU_______UAAAG...CAA-5'\n_____________|____________________________________________________________________________________________________________________________________________________________|\n_____________168__________________________________________________________________________________________________________________________________________________________33\n |
142 -- 148 |
13 -- 19 |
-70.4657 kcal/mol |
17.0109 kcal/mol |
33.4152 kcal/mol |
25 135@LB@ | |@LB@5'-UUU...AACAU A AAA AUA A AGCAAAAAAAC C C UC C CU A AUCAAUC CAUGC...CGC-3'@LB@ CUC UCA AGCAGGAUAUUGA UCU CAGCAA CU UCG UUUUUUGUCUUCAGA GC GC UCUU C AUAAUC CCUGUUUCU UUCU UAUUUU ACGCUUG@LB@ ||| ||| |:|||||:||||| ||: |||||| |: ||: |||:|::||||||:| || || |||| | |:|||| ||::|:||| |||: :||||: ||||||:@LB@ GAG AGU UUGUCCUGUAACU AGG GUCGUU GG AGU AAAGAGUAGAAGUUU CG CG AGAA G UGUUAG GGGUAGAGA AAGG GUAAAG UGCGAAU@LB@3'-AUU...AAAAU A AG GUAAC C CAA UAUAUUACAAC G CAUUACUUAC AAGCAA UU CC UU CAU AU G AAACUUUAAACUUU UAAAG...CAA-5'@LB@ | |@LB@ 168 33@LB@@LB@@LB@Energy -23.88 kcal/mol@LB@Hybridization Energy -70.4657 kcal/mol@LB@Unfolding Energy - mRNA 17.0109 kcal/mol@LB@Unfolding Energy - sRNA 33.4152 kcal/mol@LB@@LB@Position - mRNA 26 -- 134@LB@Position - sRNA 34 -- 167@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 197 |
0.009002 |
0.1751 |
bsu33650 |
yvzC |
-16.51 |
0.015985 |
3 -- 52 |
121 -- 172 |
HTH-type transcriptional regulator YvzC |
|
_____________2__________________________________________________53\n_____________|__________________________________________________|\n____5'-ACUUUCU_______C_____AU__CC__UA_________CAA___U___________UCUCA...UCU-3'\n______________CUCUUCA___GCA__GC___G__AUUGUUCGC___AGC___UUCCAUAUA\n______________|||||||___:||__:|___|__|||||:|||___|||___|||||||||\n______________GAGAAGU___UGU__UG___C__UAACAGGCG___UCG___AAGGUAUAU\n3'-AUU...AAAAU_______AGU___CC__UAA_UG_______________UUC_________UACAA...CAA-5'\n_____________|__________________________________________________|\n_____________173________________________________________________120\n |
46 -- 52 |
121 -- 127 |
-33.6584 kcal/mol |
6.173 kcal/mol |
10.5345 kcal/mol |
2 53@LB@ | |@LB@ 5'-ACUUUCU C AU CC UA CAA U UCUCA...UCU-3'@LB@ CUCUUCA GCA GC G AUUGUUCGC AGC UUCCAUAUA@LB@ ||||||| :|| :| | |||||:||| ||| |||||||||@LB@ GAGAAGU UGU UG C UAACAGGCG UCG AAGGUAUAU@LB@3'-AUU...AAAAU AGU CC UAA UG UUC UACAA...CAA-5'@LB@ | |@LB@ 173 120@LB@@LB@@LB@Energy -16.51 kcal/mol@LB@Hybridization Energy -33.6584 kcal/mol@LB@Unfolding Energy - mRNA 6.173 kcal/mol@LB@Unfolding Energy - sRNA 10.5345 kcal/mol@LB@@LB@Position - mRNA 3 -- 52@LB@Position - sRNA 121 -- 172@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 121 -- 127@LB@ |
| 94 |
0.003675 |
0.1515 |
bsu40130 |
yydK |
-17.16 |
0.011624 |
17 -- 47 |
34 -- 60 |
HTH-type transcriptional regulator YydK |
|
_____________16___________________________________48\n_____________|____________________________________|\n__________5'-A_____UUU__U___C_________CUC_________CCCGA...UGG-3'\n______________UGUCU___GC_AGU_UCGUAUAAU____UCACUUUC\n______________||||:___||_|||_:|:||||||____||||||||\n______________ACAGG___CG_UCA_GGUAUAUUA____AGUGAAAG\n3'-AUU...CUGUA_____CGU__U___A_________CAAC________AGUAG...CAA-5'\n_____________|____________________________________|\n_____________61___________________________________33\n |
30 -- 36 |
107 -- 113 |
-26.8798 kcal/mol |
2.26958 kcal/mol |
10.0128 kcal/mol |
16 48@LB@ | |@LB@ 5'-A UUU U C CUC CCCGA...UGG-3'@LB@ UGUCU GC AGU UCGUAUAAU UCACUUUC@LB@ ||||: || ||| :|:|||||| ||||||||@LB@ ACAGG CG UCA GGUAUAUUA AGUGAAAG@LB@3'-AUU...CUGUA CGU U A CAAC AGUAG...CAA-5'@LB@ | |@LB@ 61 33@LB@@LB@@LB@Energy -17.16 kcal/mol@LB@Hybridization Energy -26.8798 kcal/mol@LB@Unfolding Energy - mRNA 2.26958 kcal/mol@LB@Unfolding Energy - sRNA 10.0128 kcal/mol@LB@@LB@Position - mRNA 17 -- 47@LB@Position - sRNA 34 -- 60@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 107 -- 113@LB@ |
| 48 |
0.001494 |
0.1206 |
bsu33660 |
rghRA |
-13.24 |
0.076349 |
28 -- 146 |
39 -- 166 |
HTH-type transcriptional repressor RghR |
bsu33670 |
_____________27_________________________________________________147\n_____________|__________________________________________________|\n5'-UAU...AUUAC_____A____AAC______U___U___U_______A____A_C_______UUUAG...UCU-3'\n______________GGCUU_UGUU____UUUUG_CAA_ACA_UU___CC_GUCU_C_UAUUCCC\n______________|||||_:|||____|:|||_|||_|||_|:___||_:|||_|_|||||||\n______________CCGAA_GCAA____AGAAC_GUU_UGU_AG___GG_UAGA_G_AUAAGGG\n3'-AUU...ACUUA__________CGUU_____C_______U__CAU__G______A_______GUAAA...CAA-5'\n_____________|__________________________________________________|\n_____________167________________________________________________38\n |
139 -- 145 |
40 -- 46 |
-27.8785 kcal/mol |
6.21563 kcal/mol |
10.9223 kcal/mol |
27 147@LB@ | |@LB@5'-UAU...AUUAC A AAC U U U A A C UUUAG...UCU-3'@LB@ GGCUU UGUU UUUUG CAA ACA UU CC GUCU C UAUUCCC@LB@ ||||| :||| |:||| ||| ||| |: || :||| | |||||||@LB@ CCGAA GCAA AGAAC GUU UGU AG GG UAGA G AUAAGGG@LB@3'-AUU...ACUUA CGUU C U CAU G A GUAAA...CAA-5'@LB@ | |@LB@ 167 38@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -27.8785 kcal/mol@LB@Unfolding Energy - mRNA 6.21563 kcal/mol@LB@Unfolding Energy - sRNA 10.9223 kcal/mol@LB@@LB@Position - mRNA 28 -- 146@LB@Position - sRNA 39 -- 166@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 6 |
0.0001543 |
0.08823 |
bsu10740 |
yisJ |
-16.00 |
0.020473 |
36 -- 139 |
34 -- 134 |
inner spore coat protein H-like protein |
|
_____________35____________________________________________________140\n_____________|_____________________________________________________|\n5'-GGC...GUUCC______GCAAAUUUCAUG_______U____CA_____U____C__________CCUUC...UUC-3'\n______________CCUGUC____________UUAUUCC_CCAU__UCUUU_AAAU___AGAAUGCU\n______________||::||____________|||||||_||||__|||||_||||___|:||:|||\n______________GGGUAG____________AAUAAGG_GGUA__AGAAA_UUUA___UUUUGCGA\n3'-AUU...AGCAU______AG______________________A______C____AAC________AUUAA...CAA-5'\n_____________|_____________________________________________________|\n_____________135___________________________________________________33\n |
74 -- 80 |
15 -- 21 |
-28.1573 kcal/mol |
3.71522 kcal/mol |
11.7008 kcal/mol |
35 140@LB@ | |@LB@5'-GGC...GUUCC GCAAAUUUCAUG U CA U C CCUUC...UUC-3'@LB@ CCUGUC UUAUUCC CCAU UCUUU AAAU AGAAUGCU@LB@ ||::|| ||||||| |||| ||||| |||| |:||:|||@LB@ GGGUAG AAUAAGG GGUA AGAAA UUUA UUUUGCGA@LB@3'-AUU...AGCAU AG A C AAC AUUAA...CAA-5'@LB@ | |@LB@ 135 33@LB@@LB@@LB@Energy -16.00 kcal/mol@LB@Hybridization Energy -28.1573 kcal/mol@LB@Unfolding Energy - mRNA 3.71522 kcal/mol@LB@Unfolding Energy - sRNA 11.7008 kcal/mol@LB@@LB@Position - mRNA 36 -- 139@LB@Position - sRNA 34 -- 134@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 19 |
0.0005622 |
0.1011 |
bsu33310 |
fhuB |
-20.25 |
0.002499 |
30 -- 116 |
99 -- 184 |
iron(3+)-hydroxamate import system permease protein FhuB |
bsu01620 |
_____________29__________________________________________________________________117\n_____________|___________________________________________________________________|\n5'-AGG...UGCAA___A__________AAAAA____________UCC_______UU_____U___G______A_______ACCUU...AAG-3'\n______________UCA_UAACAGGGCA___________CGCGGC___GAGUUUC__GUAUA_AUG__GUCAU__UCUCAU\n______________|||_:||||||:||___________|||:||___:||||:|__:||||_|||__||||:__||||||\n______________AGU_GUUGUCCUGU___________GCGUCG___UUCAAGG__UAUAU_UAC__CAGUG__AGAGUA\n3'-AUU...UGAGA___A__________AACUGUAACAG___________________________AA_____AA______GAAGU...CAA-5'\n_____________|___________________________________________________________________|\n_____________185_________________________________________________________________98\n |
80 -- 86 |
126 -- 132 |
-44.6592 kcal/mol |
13.3222 kcal/mol |
14.475 kcal/mol |
29 117@LB@ | |@LB@5'-AGG...UGCAA A AAAAA UCC UU U G A ACCUU...AAG-3'@LB@ UCA UAACAGGGCA CGCGGC GAGUUUC GUAUA AUG GUCAU UCUCAU@LB@ ||| :||||||:|| |||:|| :||||:| :|||| ||| ||||: ||||||@LB@ AGU GUUGUCCUGU GCGUCG UUCAAGG UAUAU UAC CAGUG AGAGUA@LB@3'-AUU...UGAGA A AACUGUAACAG AA AA GAAGU...CAA-5'@LB@ | |@LB@ 185 98@LB@@LB@@LB@Energy -20.25 kcal/mol@LB@Hybridization Energy -44.6592 kcal/mol@LB@Unfolding Energy - mRNA 13.3222 kcal/mol@LB@Unfolding Energy - sRNA 14.475 kcal/mol@LB@@LB@Position - mRNA 30 -- 116@LB@Position - sRNA 99 -- 184@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 126 -- 132@LB@ |
| 178 |
0.008149 |
0.1751 |
bsu39610 |
yxeB |
-9.68 |
0.354141 |
1 -- 23 |
37 -- 58 |
iron(3+)-hydroxamate-binding protein YxeB |
bsu33320 |
_____________0_______24\n_____________|_______|\n5'-GCA...UGUAA_______AUUUU...CUG-3'\n______________UUCCCAU\n______________|:|||||\n______________AGGGGUA\n3'-AUU...GAAUA_______AAGAA...CAA-5'\n_____________|_______|\n_____________59______36\n |
17 -- 23 |
37 -- 43 |
-9.25042 kcal/mol |
0.0358808 kcal/mol |
2.53706 kcal/mol |
0 24@LB@ | |@LB@5'-GCA...UGUAA AUUUU...CUG-3'@LB@ UUCCCAU@LB@ |:|||||@LB@ AGGGGUA@LB@3'-AUU...GAAUA AAGAA...CAA-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -9.68 kcal/mol@LB@Hybridization Energy -9.25042 kcal/mol@LB@Unfolding Energy - mRNA 0.0358808 kcal/mol@LB@Unfolding Energy - sRNA 2.53706 kcal/mol@LB@@LB@Position - mRNA 1 -- 23@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 93 |
0.003652 |
0.1515 |
bsu03060 |
lctP |
-13.96 |
0.054584 |
161 -- 227 |
49 -- 115 |
L-lactate permease |
bsu34190 |
_____________160_______________________________________________________________________228\n_____________|_________________________________________________________________________|\n5'-CGG...AAAAA___A___AACCG__A___________AG_______GA____U____G_______________AUG________GGAAA...UGA-3'\n______________GUC_ACU_____CA_CUUUAGAGUAA_____GGCU___UUG_CAAU__UGG_GAGCAGUUGU___AUCCGUUU\n______________|||_|||_____||_|||:|:|||||_____||||___|||_||||__|||_:|:||:|:||___|:||:|:|\n______________CAG_UGA_____GU_GAAGUUUCAUU_____CCGA___AAC_GUUA__ACC_UUUGUUAGCA___UGGGUAGA\n3'-AUU...UACAA_______AAGA___A___________ACUUA____AGC________GA___G_____________________GAAUA...CAA-5'\n_____________|_________________________________________________________________________|\n_____________116_______________________________________________________________________48\n |
220 -- 226 |
50 -- 56 |
-45.5058 kcal/mol |
15.3983 kcal/mol |
19.8755 kcal/mol |
160 228@LB@ | |@LB@5'-CGG...AAAAA A AACCG A AG GA U G AUG GGAAA...UGA-3'@LB@ GUC ACU CA CUUUAGAGUAA GGCU UUG CAAU UGG GAGCAGUUGU AUCCGUUU@LB@ ||| ||| || |||:|:||||| |||| ||| |||| ||| :|:||:|:|| |:||:|:|@LB@ CAG UGA GU GAAGUUUCAUU CCGA AAC GUUA ACC UUUGUUAGCA UGGGUAGA@LB@3'-AUU...UACAA AAGA A ACUUA AGC GA G GAAUA...CAA-5'@LB@ | |@LB@ 116 48@LB@@LB@@LB@Energy -13.96 kcal/mol@LB@Hybridization Energy -45.5058 kcal/mol@LB@Unfolding Energy - mRNA 15.3983 kcal/mol@LB@Unfolding Energy - sRNA 19.8755 kcal/mol@LB@@LB@Position - mRNA 161 -- 227@LB@Position - sRNA 49 -- 115@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 99 |
0.004027 |
0.1561 |
bsu13870 |
ykvZ |
-9.91 |
0.324242 |
1 -- 15 |
1 -- 17 |
LacI family transcriptional regulator |
|
______________1________________16\n______________|________________|\n___________5'-__________A______UUUGG...GAA-3'\n______________GUUUAAUUUC___UGUU\n______________|:||||||||___||||\n______________CGAAUUAAAG___ACAA\n3'-AUU...UUUUG__________AAA____-5'\n_____________|________________|\n_____________18_______________1\n |
4 -- 10 |
8 -- 14 |
-10.8546 kcal/mol |
0.387335 kcal/mol |
1.29438 kcal/mol |
1 16@LB@ | |@LB@ 5'- A UUUGG...GAA-3'@LB@ GUUUAAUUUC UGUU@LB@ |:|||||||| ||||@LB@ CGAAUUAAAG ACAA@LB@3'-AUU...UUUUG AAA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -10.8546 kcal/mol@LB@Unfolding Energy - mRNA 0.387335 kcal/mol@LB@Unfolding Energy - sRNA 1.29438 kcal/mol@LB@@LB@Position - mRNA 1 -- 15@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 8 -- 14@LB@ |
