133 |
0.006226 |
0.1741 |
bsu14430 |
ykpA |
-10.78 |
0.228396 |
48 -- 105 |
75 -- 129 |
ABC transporter ATP-binding protein |
|
_____________47____________106\n_____________|_____________|\n5'-GUA...AAGUU_____________AAUAU...UUG-3'\n______________AUUUGAAGAUGUU\n______________|||||||:|:|:|\n______________UAAACUUUUGCGA\n3'-AUU...AACUU_____________AUUAA...CAA-5'\n_____________|_____________|\n_____________130___________74\n |
254 -- 260 |
15 -- 21 |
-11.9489 kcal/mol |
0.844332 kcal/mol |
3.96844 kcal/mol |
47 106@LB@ | |@LB@5'-GUA...AAGUU AAUAU...UUG-3'@LB@ AUUUGAAGAUGUU@LB@ |||||||:|:|:|@LB@ UAAACUUUUGCGA@LB@3'-AUU...AACUU AUUAA...CAA-5'@LB@ | |@LB@ 130 74@LB@@LB@@LB@Energy -10.78 kcal/mol@LB@Hybridization Energy -11.9489 kcal/mol@LB@Unfolding Energy - mRNA 0.844332 kcal/mol@LB@Unfolding Energy - sRNA 3.96844 kcal/mol@LB@@LB@Position - mRNA 48 -- 105@LB@Position - sRNA 75 -- 129@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 15 -- 21@LB@ |
55 |
0.001813 |
0.1212 |
bsu30290 |
amyC |
-12.90 |
0.089506 |
91 -- 153 |
102 -- 159 |
ABC transporter permease |
|
_____________90_________________________________________________________________154\n_____________|__________________________________________________________________|\n5'-CUG...UCAAA_________GCC___UA________AC_____G_______UU___GCAU__________GA_____AGCUU...CUU-3'\n______________CGGCAGGAU___GGC__UG_CCGCA__GCAAG___CAUAU__AUG____UUGUCAUUUU__UCAUC\n______________|::|||||:___|:|__||_|||||__|||||___|||||__|||____||||||:|||__|||||\n______________GUUGUCCUG___CUG__AC_GGCGU__CGUUC___GUAUA__UAC____AACAGUGAAA__AGUAG\n3'-AUU...AAGUA_________UAA___UA__A____________AAG_____U__________________G______AAGUU...CAA-5'\n_____________|__________________________________________________________________|\n_____________160________________________________________________________________101\n |
139 -- 145 |
109 -- 115 |
-48.9264 kcal/mol |
23.4207 kcal/mol |
14.7573 kcal/mol |
90 154@LB@ | |@LB@5'-CUG...UCAAA GCC UA AC G UU GCAU GA AGCUU...CUU-3'@LB@ CGGCAGGAU GGC UG CCGCA GCAAG CAUAU AUG UUGUCAUUUU UCAUC@LB@ |::|||||: |:| || ||||| ||||| ||||| ||| ||||||:||| |||||@LB@ GUUGUCCUG CUG AC GGCGU CGUUC GUAUA UAC AACAGUGAAA AGUAG@LB@3'-AUU...AAGUA UAA UA A AAG U G AAGUU...CAA-5'@LB@ | |@LB@ 160 101@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -48.9264 kcal/mol@LB@Unfolding Energy - mRNA 23.4207 kcal/mol@LB@Unfolding Energy - sRNA 14.7573 kcal/mol@LB@@LB@Position - mRNA 91 -- 153@LB@Position - sRNA 102 -- 159@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 109 -- 115@LB@ |
139 |
0.006395 |
0.1741 |
bsu30170 |
ytcP |
-13.74 |
0.060669 |
6 -- 28 |
1 -- 23 |
ABC transporter permease |
|
_____________5_______________________29\n_____________|_______________________|\n______5'-UCUAA__UU_____CUU___________AUCGG...UUG-3'\n______________GA__AUGCU___UUUCUUUUGUU\n______________||__|:|||___|||||||||||\n______________CU__UGCGA___AAAGAAAACAA\n3'-AUU...UUAAA__UU_____AUU___________-5'\n_____________|______________________|\n_____________24_____________________1\n |
22 -- 28 |
1 -- 7 |
-18.7227 kcal/mol |
2.34195 kcal/mol |
4.12892 kcal/mol |
5 29@LB@ | |@LB@ 5'-UCUAA UU CUU AUCGG...UUG-3'@LB@ GA AUGCU UUUCUUUUGUU@LB@ || |:||| |||||||||||@LB@ CU UGCGA AAAGAAAACAA@LB@3'-AUU...UUAAA UU AUU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -13.74 kcal/mol@LB@Hybridization Energy -18.7227 kcal/mol@LB@Unfolding Energy - mRNA 2.34195 kcal/mol@LB@Unfolding Energy - sRNA 4.12892 kcal/mol@LB@@LB@Position - mRNA 6 -- 28@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 1 -- 7@LB@ |
196 |
0.008988 |
0.1751 |
bsu24970 |
pstA |
-9.97 |
0.317060 |
128 -- 176 |
38 -- 86 |
ABC transporter permease |
|
_____________127___________________________________________________177\n_____________|_____________________________________________________|\n5'-AUU...AAUGG___________U__________UGU__U__U________CUG_______G___CUUGU...UUA-3'\n______________GGCUU_G_UGC__UC_UGGUGA___CA_UC_UGUUCAUC___CUUAUUC_CUA\n______________|||||_|_|||__||_|||::|___||_||_|:::||||___|||||||_|:|\n______________CCGAA_C_ACG__AG_ACCGUU___GU_AG_AUGGGUAG___GAAUAAG_GGU\n3'-AUU...ACUUA_____G_A___UU__A______U____U__C________A_________G___AAAGA...CAA-5'\n_____________|_____________________________________________________|\n_____________87____________________________________________________37\n |
166 -- 172 |
42 -- 48 |
-33.9261 kcal/mol |
12.9253 kcal/mol |
13.9524 kcal/mol |
127 177@LB@ | |@LB@5'-AUU...AAUGG U UGU U U CUG G CUUGU...UUA-3'@LB@ GGCUU G UGC UC UGGUGA CA UC UGUUCAUC CUUAUUC CUA@LB@ ||||| | ||| || |||::| || || |:::|||| ||||||| |:|@LB@ CCGAA C ACG AG ACCGUU GU AG AUGGGUAG GAAUAAG GGU@LB@3'-AUU...ACUUA G A UU A U U C A G AAAGA...CAA-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -9.97 kcal/mol@LB@Hybridization Energy -33.9261 kcal/mol@LB@Unfolding Energy - mRNA 12.9253 kcal/mol@LB@Unfolding Energy - sRNA 13.9524 kcal/mol@LB@@LB@Position - mRNA 128 -- 176@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 42 -- 48@LB@ |
24 |
0.0006259 |
0.1011 |
bsu03380 |
yckB |
-16.82 |
0.013754 |
20 -- 129 |
16 -- 148 |
ABC transporter substrate-binding protein |
|
_____________19_________________________________________________________________________________________________________________________________________________130\n_____________|__________________________________________________________________________________________________________________________________________________|\n5'-UGC...UCCUU__U____C_______CA___U___A________UUUUUUCA_______C_____CC_____U__AC_______________________________CCC________G_____UGUAUA_A__A___GAACUU____________GAUCA...CCA-3'\n______________GG_ACGU_UGGCAUU__UCC_UGG_CAA_UUCC___________UCAC__UCUU__CUUCA_AG_________GCUUU_____________UAAACA_____ACCCAU_CUUUU______C_CA_UUC_______UUUGAAAACGC\n______________||_||:|_||:||||__|||_::|_|||_||||___________||||__|||:__|||||_||_________||||:_____________:|||||_____||||||_||:||______|_||_|||_______|||||||||||\n______________CC_UGUA_ACUGUAA__AGG_GUC_GUU_AAGG___________AGUG__AGAG__GAAGU_UC_________CGAAG_____________GUUUGU_____UGGGUA_GAGAA______G_GU_AAG_______AAACUUUUGCG\n3'-AUU...GUUGU_______________C____C_______C____UAUAUUACAAC____AA____UA_____U__AUUACUUAC_____CAACGUUAGAACC______UAGCA____________UAAGG_____A___AAACUUU___________AAUUA...CAA-5'\n_____________|__________________________________________________________________________________________________________________________________________________|\n_____________149________________________________________________________________________________________________________________________________________________15\n |
123 -- 129 |
16 -- 22 |
-61.2162 kcal/mol |
13.3554 kcal/mol |
33.3199 kcal/mol |
19 130@LB@ | |@LB@5'-UGC...UCCUU U C CA U A UUUUUUCA C CC U AC CCC G UGUAUA A A GAACUU GAUCA...CCA-3'@LB@ GG ACGU UGGCAUU UCC UGG CAA UUCC UCAC UCUU CUUCA AG GCUUU UAAACA ACCCAU CUUUU C CA UUC UUUGAAAACGC@LB@ || ||:| ||:|||| ||| ::| ||| |||| |||| |||: ||||| || ||||: :||||| |||||| ||:|| | || ||| |||||||||||@LB@ CC UGUA ACUGUAA AGG GUC GUU AAGG AGUG AGAG GAAGU UC CGAAG GUUUGU UGGGUA GAGAA G GU AAG AAACUUUUGCG@LB@3'-AUU...GUUGU C C C UAUAUUACAAC AA UA U AUUACUUAC CAACGUUAGAACC UAGCA UAAGG A AAACUUU AAUUA...CAA-5'@LB@ | |@LB@ 149 15@LB@@LB@@LB@Energy -16.82 kcal/mol@LB@Hybridization Energy -61.2162 kcal/mol@LB@Unfolding Energy - mRNA 13.3554 kcal/mol@LB@Unfolding Energy - sRNA 33.3199 kcal/mol@LB@@LB@Position - mRNA 20 -- 129@LB@Position - sRNA 16 -- 148@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 16 -- 22@LB@ |
146 |
0.00677 |
0.1741 |
bsu29690 |
acuA |
-9.85 |
0.331997 |
126 -- 137 |
14 -- 25 |
acetoin utilization protein AcuA |
|
_____________125____________138\n_____________|______________|\n5'-UAU...AUUCA______________UUUUA...AUG-3'\n______________UAUUCUUC_UCAAU\n______________||:|||||_||||:\n______________AUGAGAAG_AGUUG\n3'-AUU...AAAAA________U_____UCCUG...CAA-5'\n_____________|______________|\n_____________26_____________13\n |
95 -- 101 |
162 -- 168 |
-12.3213 kcal/mol |
1.49895 kcal/mol |
1.40683 kcal/mol |
125 138@LB@ | |@LB@5'-UAU...AUUCA UUUUA...AUG-3'@LB@ UAUUCUUC UCAAU@LB@ ||:||||| ||||:@LB@ AUGAGAAG AGUUG@LB@3'-AUU...AAAAA U UCCUG...CAA-5'@LB@ | |@LB@ 26 13@LB@@LB@@LB@Energy -9.85 kcal/mol@LB@Hybridization Energy -12.3213 kcal/mol@LB@Unfolding Energy - mRNA 1.49895 kcal/mol@LB@Unfolding Energy - sRNA 1.40683 kcal/mol@LB@@LB@Position - mRNA 126 -- 137@LB@Position - sRNA 14 -- 25@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 162 -- 168@LB@ |
23 |
0.0006135 |
0.1011 |
bsu23610 |
nudF |
-13.21 |
0.077687 |
6 -- 79 |
37 -- 88 |
adp-ribose pyrophosphatase |
|
_____________5__________________________________________________________________________80\n_____________|__________________________________________________________________________|\n______5'-CUUUU_________AGAUC_______UCA__UAUUG__A_____GU____A_____UUAACUUCGCUCGA_________GCUUU...AAG-3'\n______________AUGGCUUUG_____CAAUCUU___CA_____AA_UGUGC__CCAU_CUCUU______________AUUUCCCAU\n______________|||||||:|_____|||||||___||_____||_:||:|__||||_|||||______________|||:|||||\n______________UACCGAAGC_____GUUAGAA___GU_____UU_GCAUG__GGUA_GAGAA______________UAAGGGGUA\n3'-AUU...UUACU_________AAC_________CC___UUG____A________________________________________AAGAA...CAA-5'\n_____________|__________________________________________________________________________|\n_____________89_________________________________________________________________________36\n |
73 -- 79 |
37 -- 43 |
-36.6547 kcal/mol |
11.779 kcal/mol |
14.1528 kcal/mol |
5 80@LB@ | |@LB@ 5'-CUUUU AGAUC UCA UAUUG A GU A UUAACUUCGCUCGA GCUUU...AAG-3'@LB@ AUGGCUUUG CAAUCUU CA AA UGUGC CCAU CUCUU AUUUCCCAU@LB@ |||||||:| ||||||| || || :||:| |||| ||||| |||:|||||@LB@ UACCGAAGC GUUAGAA GU UU GCAUG GGUA GAGAA UAAGGGGUA@LB@3'-AUU...UUACU AAC CC UUG A AAGAA...CAA-5'@LB@ | |@LB@ 89 36@LB@@LB@@LB@Energy -13.21 kcal/mol@LB@Hybridization Energy -36.6547 kcal/mol@LB@Unfolding Energy - mRNA 11.779 kcal/mol@LB@Unfolding Energy - sRNA 14.1528 kcal/mol@LB@@LB@Position - mRNA 6 -- 79@LB@Position - sRNA 37 -- 88@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 37 -- 43@LB@ |
183 |
0.008402 |
0.1751 |
bsu03010 |
amhX |
-13.44 |
0.069669 |
23 -- 92 |
7 -- 86 |
amidohydrolase AmhX |
|
_____________22_______________________________________________________________________________________93\n_____________|________________________________________________________________________________________|\n5'-AAA...UCUUA____G____U______GC____________________AU___GAUCCA__________________________A______UA____GAAUA...CUU-3'\n______________GGCU_UGUU_CGG_CU__UGGCA________UACUCAU__UUC______UCCCC___UCU_____GUUUGAAAAU__UUAAU__UUCU\n______________||||_:|||_|::_||__|||||________|||:|||__:||______|||||___|||_____:||||||||:__|||||__||||\n______________CCGA_GCAA_GUU_GA__ACCGU________AUGGGUA__GAG______AGGGG___AGA_____UAAACUUUUG__AAUUA__AAGA\n3'-AUU...ACUUA____A____C___A_________UUGUUAGC____________AAUA_______UAA___AACUU__________CG___________AAACAA-5'\n_____________|________________________________________________________________________________________|\n_____________87_______________________________________________________________________________________6\n |
45 -- 51 |
51 -- 57 |
-41.3184 kcal/mol |
11.5757 kcal/mol |
17.8015 kcal/mol |
22 93@LB@ | |@LB@5'-AAA...UCUUA G U GC AU GAUCCA A UA GAAUA...CUU-3'@LB@ GGCU UGUU CGG CU UGGCA UACUCAU UUC UCCCC UCU GUUUGAAAAU UUAAU UUCU@LB@ |||| :||| |:: || ||||| |||:||| :|| ||||| ||| :||||||||: ||||| ||||@LB@ CCGA GCAA GUU GA ACCGU AUGGGUA GAG AGGGG AGA UAAACUUUUG AAUUA AAGA@LB@3'-AUU...ACUUA A C A UUGUUAGC AAUA UAA AACUU CG AAACAA-5'@LB@ | |@LB@ 87 6@LB@@LB@@LB@Energy -13.44 kcal/mol@LB@Hybridization Energy -41.3184 kcal/mol@LB@Unfolding Energy - mRNA 11.5757 kcal/mol@LB@Unfolding Energy - sRNA 17.8015 kcal/mol@LB@@LB@Position - mRNA 23 -- 92@LB@Position - sRNA 7 -- 86@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 51 -- 57@LB@ |
126 |
0.005872 |
0.1741 |
bsu36510 |
amtB |
-10.53 |
0.253946 |
51 -- 89 |
33 -- 57 |
ammonium transporter NrgA |
|
_____________50_____________________________________________________________________________________90\n_____________|______________________________________________________________________________________|\n______5'-CUCAU______A_____UUUUAUAGAUACAA______AUAUC____AAAA____AU____C_______UUCCAUCCCUCGAUAA_______CAAAA...GCA-3'\n______________AUGAAU_GUUUC______________AGUCUU_____GCAA____UGCC__UCUC___UUCCU________________CAUUUCU\n______________||||||_|:|||______________|:||||_____:|||____|:||__||||___||||:________________|||||||\n______________UACUUA_CGAAG______________UUAGAA_____UGUU____AUGG__AGAG___AAGGG________________GUAAAGA\n3'-AUU...UUCAU______C_____CAACG_______________CCGUU____AGC_____GU____AAU____________________________AACUU...CAA-5'\n_____________|______________________________________________________________________________________|\n_____________58_____________________________________________________________________________________32\n |
83 -- 89 |
33 -- 39 |
-30.7855 kcal/mol |
7.29289 kcal/mol |
15.7787 kcal/mol |
50 90@LB@ | |@LB@ 5'-CUCAU A UUUUAUAGAUACAA AUAUC AAAA AU C UUCCAUCCCUCGAUAA CAAAA...GCA-3'@LB@ AUGAAU GUUUC AGUCUU GCAA UGCC UCUC UUCCU CAUUUCU@LB@ |||||| |:||| |:|||| :||| |:|| |||| ||||: |||||||@LB@ UACUUA CGAAG UUAGAA UGUU AUGG AGAG AAGGG GUAAAGA@LB@3'-AUU...UUCAU C CAACG CCGUU AGC GU AAU AACUU...CAA-5'@LB@ | |@LB@ 58 32@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -30.7855 kcal/mol@LB@Unfolding Energy - mRNA 7.29289 kcal/mol@LB@Unfolding Energy - sRNA 15.7787 kcal/mol@LB@@LB@Position - mRNA 51 -- 89@LB@Position - sRNA 33 -- 57@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 33 -- 39@LB@ |
78 |
0.002646 |
0.1315 |
bsu37410 |
albE |
-16.69 |
0.014616 |
33 -- 81 |
32 -- 77 |
antilisterial bacteriocin subtilosin biosynthesis protein AlbE |
|
_____________32_________________________________________________82\n_____________|__________________________________________________|\n5'-CUU...AUGGA_______CU_____AU____GU_______G__UUGUC______UA_____AGCCA...AAA-3'\n______________GCGGUUU___CAAA__AUCG__CUUAUCU_UU_____UUCCCC__UUCUU\n______________||::|:|___||||__||||__|::||||_||_____||||||__|||||\n______________CGUUAGA___GUUU__UAGC__GGGUAGA_AA_____AAGGGG__AAGAA\n3'-AUU...AGCAA_______ACC____GU____AU_______G__U__________UA_____ACUUU...CAA-5'\n_____________|__________________________________________________|\n_____________78_________________________________________________31\n |
54 -- 60 |
49 -- 55 |
-34.8992 kcal/mol |
7.30498 kcal/mol |
13.8943 kcal/mol |
32 82@LB@ | |@LB@5'-CUU...AUGGA CU AU GU G UUGUC UA AGCCA...AAA-3'@LB@ GCGGUUU CAAA AUCG CUUAUCU UU UUCCCC UUCUU@LB@ ||::|:| |||| |||| |::|||| || |||||| |||||@LB@ CGUUAGA GUUU UAGC GGGUAGA AA AAGGGG AAGAA@LB@3'-AUU...AGCAA ACC GU AU G U UA ACUUU...CAA-5'@LB@ | |@LB@ 78 31@LB@@LB@@LB@Energy -16.69 kcal/mol@LB@Hybridization Energy -34.8992 kcal/mol@LB@Unfolding Energy - mRNA 7.30498 kcal/mol@LB@Unfolding Energy - sRNA 13.8943 kcal/mol@LB@@LB@Position - mRNA 33 -- 81@LB@Position - sRNA 32 -- 77@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 49 -- 55@LB@ |