| 51 |
0.001644 |
0.1212 |
bsu29870 |
ytzB |
-11.72 |
0.152375 |
23 -- 59 |
33 -- 85 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________22__________________________________________60\n_____________|___________________________________________|\n5'-CUG...AUUGC___________________________________________AAAAG...AAG-3'\n______________UUAACAGGAU_UUGGC__UGUU__________UCUGUAUAAUG\n______________|:|||||||:_|||:|__|||:__________||::|||||||\n______________AGUUGUCCUG_AACUG__ACAG__________AGGUAUAUUAC\n3'-AUU...GAAGU__________U_____UA____GCGUCGUUCA___________AACAG...CAA-5'\n_____________|___________________________________________|\n_____________86__________________________________________32\n |
163 -- 169 |
118 -- 124 |
-27.3559 kcal/mol |
7.06665 kcal/mol |
10.6143 kcal/mol |
22 60@LB@ | |@LB@5'-CUG...AUUGC AAAAG...AAG-3'@LB@ UUAACAGGAU UUGGC UGUU UCUGUAUAAUG@LB@ |:|||||||: |||:| |||: ||::|||||||@LB@ AGUUGUCCUG AACUG ACAG AGGUAUAUUAC@LB@3'-AUU...GAAGU U UA GCGUCGUUCA AACAG...CAA-5'@LB@ | |@LB@ 86 32@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -27.3559 kcal/mol@LB@Unfolding Energy - mRNA 7.06665 kcal/mol@LB@Unfolding Energy - sRNA 10.6143 kcal/mol@LB@@LB@Position - mRNA 23 -- 59@LB@Position - sRNA 33 -- 85@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 118 -- 124@LB@ |
| 57 |
0.001839 |
0.1212 |
bsu14940 |
ylbA |
-10.08 |
0.303417 |
14 -- 67 |
35 -- 81 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________13___________________________________________68\n_____________|____________________________________________|\n5'-CAU...AAUAC_________AUU______U___C___C___AG____________UGUCA...AAU-3'\n______________CG_UGCAAU____GCAAG_CGG_UGU_AUC__AUCUUUUAUUUU\n______________||_||||||____||||:_|::_:||_|:|__||||:|||||::\n______________GC_ACGUUA____CGUUU_GUU_GCA_UGG__UAGAGAAUAAGG\n3'-AUU...CCGAA__A______GAAC_________A_______G_____________GGUAA...CAA-5'\n_____________|____________________________________________|\n_____________82___________________________________________34\n |
49 -- 55 |
41 -- 47 |
-26.0695 kcal/mol |
9.01529 kcal/mol |
9.64997 kcal/mol |
13 68@LB@ | |@LB@5'-CAU...AAUAC AUU U C C AG UGUCA...AAU-3'@LB@ CG UGCAAU GCAAG CGG UGU AUC AUCUUUUAUUUU@LB@ || |||||| ||||: |:: :|| |:| ||||:|||||::@LB@ GC ACGUUA CGUUU GUU GCA UGG UAGAGAAUAAGG@LB@3'-AUU...CCGAA A GAAC A G GGUAA...CAA-5'@LB@ | |@LB@ 82 34@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -26.0695 kcal/mol@LB@Unfolding Energy - mRNA 9.01529 kcal/mol@LB@Unfolding Energy - sRNA 9.64997 kcal/mol@LB@@LB@Position - mRNA 14 -- 67@LB@Position - sRNA 35 -- 81@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 58 |
0.001848 |
0.1212 |
bsu21840 |
ypjP |
-10.31 |
0.277541 |
15 -- 73 |
14 -- 70 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________14___________________________________________________________74\n_____________|____________________________________________________________|\n5'-UAA...AACUG__________AG___CAA____GCGGAAAG____C____A_______A___U________UUACA...CCG-3'\n______________UGGCAAACAG__CGU___UCAU________CCUC_UUUC__UGAAAU_UUG_AAGCGUUU\n______________|||||||||:__|||___:|||________||:|_||||__||||||_|||_||:||:||\n______________ACCGUUUGUU__GCA___GGUA________GGGG_AAAG__ACUUUA_AAC_UUUGCGAA\n3'-AUU...UUAGA__________A____UG_____GAGAAUAA____U____AA__________U________UUAAA...CAA-5'\n_____________|____________________________________________________________|\n_____________71___________________________________________________________13\n |
67 -- 73 |
14 -- 20 |
-38.3558 kcal/mol |
13.3253 kcal/mol |
15.5628 kcal/mol |
14 74@LB@ | |@LB@5'-UAA...AACUG AG CAA GCGGAAAG C A A U UUACA...CCG-3'@LB@ UGGCAAACAG CGU UCAU CCUC UUUC UGAAAU UUG AAGCGUUU@LB@ |||||||||: ||| :||| ||:| |||| |||||| ||| ||:||:||@LB@ ACCGUUUGUU GCA GGUA GGGG AAAG ACUUUA AAC UUUGCGAA@LB@3'-AUU...UUAGA A UG GAGAAUAA U AA U UUAAA...CAA-5'@LB@ | |@LB@ 71 13@LB@@LB@@LB@Energy -10.31 kcal/mol@LB@Hybridization Energy -38.3558 kcal/mol@LB@Unfolding Energy - mRNA 13.3253 kcal/mol@LB@Unfolding Energy - sRNA 15.5628 kcal/mol@LB@@LB@Position - mRNA 15 -- 73@LB@Position - sRNA 14 -- 70@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 62 |
0.001958 |
0.1214 |
bsu25150 |
yqfQ |
-10.78 |
0.228520 |
210 -- 221 |
125 -- 139 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________209_____________222\n_____________|_______________|\n5'-AAU...UUUCA_______________AUGAG...UGC-3'\n______________CCGCAGCAG___CCA\n______________||||||||:___|||\n______________GGCGUCGUU___GGU\n3'-AUU...UAACA_________CAA___AUAUU...CAA-5'\n_____________|_______________|\n_____________140_____________124\n |
212 -- 218 |
131 -- 137 |
-17.5181 kcal/mol |
2.74724 kcal/mol |
6.06036 kcal/mol |
209 222@LB@ | |@LB@5'-AAU...UUUCA AUGAG...UGC-3'@LB@ CCGCAGCAG CCA@LB@ ||||||||: |||@LB@ GGCGUCGUU GGU@LB@3'-AUU...UAACA CAA AUAUU...CAA-5'@LB@ | |@LB@ 140 124@LB@@LB@@LB@Energy -10.78 kcal/mol@LB@Hybridization Energy -17.5181 kcal/mol@LB@Unfolding Energy - mRNA 2.74724 kcal/mol@LB@Unfolding Energy - sRNA 6.06036 kcal/mol@LB@@LB@Position - mRNA 210 -- 221@LB@Position - sRNA 125 -- 139@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 131 -- 137@LB@ |
| 76 |
0.002466 |
0.1257 |
bsu07870 |
yfkK |
-15.12 |
0.031390 |
12 -- 33 |
33 -- 55 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________11______________________34\n_____________|_______________________|\n5'-UGU...ACCUC__________UGC__________CUAAA...UCA-3'\n______________CCUA_UUCUU___CCCUAUUUCU\n______________||:|_:||||___|||:||||||\n______________GGGU_GAGAA___GGGGUAAAGA\n3'-AUU...AGCAU____A_____UAA__________AACUU...CAA-5'\n_____________|_______________________|\n_____________56______________________32\n |
27 -- 33 |
33 -- 39 |
-21.8682 kcal/mol |
0.689294 kcal/mol |
9.04338 kcal/mol |
11 34@LB@ | |@LB@5'-UGU...ACCUC UGC CUAAA...UCA-3'@LB@ CCUA UUCUU CCCUAUUUCU@LB@ ||:| :|||| |||:||||||@LB@ GGGU GAGAA GGGGUAAAGA@LB@3'-AUU...AGCAU A UAA AACUU...CAA-5'@LB@ | |@LB@ 56 32@LB@@LB@@LB@Energy -15.12 kcal/mol@LB@Hybridization Energy -21.8682 kcal/mol@LB@Unfolding Energy - mRNA 0.689294 kcal/mol@LB@Unfolding Energy - sRNA 9.04338 kcal/mol@LB@@LB@Position - mRNA 12 -- 33@LB@Position - sRNA 33 -- 55@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 80 |
0.002732 |
0.1323 |
bsu14790 |
ylaI |
-9.42 |
0.391167 |
138 -- 189 |
118 -- 178 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________137____________________________________________________190\n_____________|______________________________________________________|\n5'-AGA...CUUUA_______C___UUUU_____GCUUC____A_________UAAUA____U_____AAAGA...AUA-3'\n______________GCUUUUU_UUA____GGACA_______UG_UCCGUGGUA_____CAUG_UAGUG\n______________:||:||:_|:|____|||||_______||_||||::|:|_____|||:_||:||\n______________UGAGAAG_AGU____CCUGU_______AC_AGGCGUCGU_____GUAU_AUUAC\n3'-AUU...AAAAA_______U___UGU______AACUGUA____________UCAAG__________AACAG...CAA-5'\n_____________|______________________________________________________|\n_____________179____________________________________________________117\n |
167 -- 173 |
133 -- 139 |
-31.618 kcal/mol |
11.7219 kcal/mol |
10.6253 kcal/mol |
137 190@LB@ | |@LB@5'-AGA...CUUUA C UUUU GCUUC A UAAUA U AAAGA...AUA-3'@LB@ GCUUUUU UUA GGACA UG UCCGUGGUA CAUG UAGUG@LB@ :||:||: |:| ||||| || ||||::|:| |||: ||:||@LB@ UGAGAAG AGU CCUGU AC AGGCGUCGU GUAU AUUAC@LB@3'-AUU...AAAAA U UGU AACUGUA UCAAG AACAG...CAA-5'@LB@ | |@LB@ 179 117@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -31.618 kcal/mol@LB@Unfolding Energy - mRNA 11.7219 kcal/mol@LB@Unfolding Energy - sRNA 10.6253 kcal/mol@LB@@LB@Position - mRNA 138 -- 189@LB@Position - sRNA 118 -- 178@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 133 -- 139@LB@ |
| 86 |
0.003162 |
0.1423 |
bsu32080 |
yuiB |
-17.14 |
0.011766 |
214 -- 271 |
6 -- 63 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________213____________________________________________________________272\n_____________|______________________________________________________________|\n5'-UAG...UCUGC________A_______AA_______G_U____GUC___UUU_______U_____________AUUAA...GGA-3'\n______________CAGUCGUA_UCAUCUC__UUGUUUU_U_UUUU___UUG___UUUGGAA_CG____GUUUCUU\n______________||:|||||_:||||||__||:||::_:_|||:___|||___||||:||_||____:||||||\n______________GUUAGCAU_GGUAGAG__AAUAAGG_G_AAAG___AAC___AAACUUU_GC____UAAAGAA\n3'-AUU...CGUUU________G________________G_U____A_____UUU_______U__GAAU_______AACAA-5'\n_____________|______________________________________________________________|\n_____________64_____________________________________________________________5\n |
265 -- 271 |
6 -- 12 |
-35.4392 kcal/mol |
4.76592 kcal/mol |
13.9327 kcal/mol |
213 272@LB@ | |@LB@5'-UAG...UCUGC A AA G U GUC UUU U AUUAA...GGA-3'@LB@ CAGUCGUA UCAUCUC UUGUUUU U UUUU UUG UUUGGAA CG GUUUCUU@LB@ ||:||||| :|||||| ||:||:: : |||: ||| ||||:|| || :||||||@LB@ GUUAGCAU GGUAGAG AAUAAGG G AAAG AAC AAACUUU GC UAAAGAA@LB@3'-AUU...CGUUU G G U A UUU U GAAU AACAA-5'@LB@ | |@LB@ 64 5@LB@@LB@@LB@Energy -17.14 kcal/mol@LB@Hybridization Energy -35.4392 kcal/mol@LB@Unfolding Energy - mRNA 4.76592 kcal/mol@LB@Unfolding Energy - sRNA 13.9327 kcal/mol@LB@@LB@Position - mRNA 214 -- 271@LB@Position - sRNA 6 -- 63@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 101 |
0.004166 |
0.1594 |
bsu11270 |
yjzD |
-8.07 |
0.607351 |
275 -- 290 |
119 -- 136 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________274________________291\n_____________|__________________|\n5'-UAG...AUGAA________UA________UUCAA...CAU-3'\n______________CAGC__GU__CGUAUAAU\n______________||||__||__|:||||||\n______________GUCG__CA__GUAUAUUA\n3'-AUU...CAGGC____UU__AG________CAACA...CAA-5'\n_____________|__________________|\n_____________137________________118\n |
284 -- 290 |
119 -- 125 |
-12.692 kcal/mol |
1.37877 kcal/mol |
3.96273 kcal/mol |
274 291@LB@ | |@LB@5'-UAG...AUGAA UA UUCAA...CAU-3'@LB@ CAGC GU CGUAUAAU@LB@ |||| || |:||||||@LB@ GUCG CA GUAUAUUA@LB@3'-AUU...CAGGC UU AG CAACA...CAA-5'@LB@ | |@LB@ 137 118@LB@@LB@@LB@Energy -8.07 kcal/mol@LB@Hybridization Energy -12.692 kcal/mol@LB@Unfolding Energy - mRNA 1.37877 kcal/mol@LB@Unfolding Energy - sRNA 3.96273 kcal/mol@LB@@LB@Position - mRNA 275 -- 290@LB@Position - sRNA 119 -- 136@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 119 -- 125@LB@ |
| 112 |
0.00483 |
0.1671 |
bsu26010 |
yqbQ |
-18.75 |
0.005285 |
180 -- 239 |
82 -- 139 |
Evidence 4: Homologs of previously reported genes of unknown function |
bsu12700 |
_____________179______________________________________________________________240\n_____________|________________________________________________________________|\n5'-CUA...AAAUA_______________G______ACA__AUAGA___________A______AAACG_________GAGCU...UUA-3'\n______________CCGCAGUAAG___CA_GUGAUG___UG_____AC_UUUUCGUC_UUAAAG_____GAAUGGCUU\n______________||||||:|||___||_:|:|||___||_____||_||:||:||_|:||||_____|||||||||\n______________GGCGUCGUUC___GU_UAUUAC___AC_____UG_AAGAGUAG_AGUUUC_____CUUACCGAA\n3'-AUU...UAACA__________AAG__A______A____AG_____A________A______AUUA__________GCAAC...CAA-5'\n_____________|________________________________________________________________|\n_____________140______________________________________________________________81\n |
233 -- 239 |
82 -- 88 |
-46.2512 kcal/mol |
11.9879 kcal/mol |
18.3017 kcal/mol |
179 240@LB@ | |@LB@5'-CUA...AAAUA G ACA AUAGA A AAACG GAGCU...UUA-3'@LB@ CCGCAGUAAG CA GUGAUG UG AC UUUUCGUC UUAAAG GAAUGGCUU@LB@ ||||||:||| || :|:||| || || ||:||:|| |:|||| |||||||||@LB@ GGCGUCGUUC GU UAUUAC AC UG AAGAGUAG AGUUUC CUUACCGAA@LB@3'-AUU...UAACA AAG A A AG A A AUUA GCAAC...CAA-5'@LB@ | |@LB@ 140 81@LB@@LB@@LB@Energy -18.75 kcal/mol@LB@Hybridization Energy -46.2512 kcal/mol@LB@Unfolding Energy - mRNA 11.9879 kcal/mol@LB@Unfolding Energy - sRNA 18.3017 kcal/mol@LB@@LB@Position - mRNA 180 -- 239@LB@Position - sRNA 82 -- 139@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 82 -- 88@LB@ |
| 113 |
0.005141 |
0.1741 |
bsu36080 |
ywrF |
-10.09 |
0.302867 |
265 -- 274 |
38 -- 47 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________264________275\n_____________|__________|\n5'-UGG...UACCG__________CCCCA...UUU-3'\n______________UUAUUCCCCG\n______________|||||||||:\n______________AAUAAGGGGU\n3'-AUU...UAGAG__________AAAGA...CAA-5'\n_____________|__________|\n_____________48_________37\n |
268 -- 274 |
38 -- 44 |
-13.6226 kcal/mol |
1.45475 kcal/mol |
3.86656 kcal/mol |
264 275@LB@ | |@LB@5'-UGG...UACCG CCCCA...UUU-3'@LB@ UUAUUCCCCG@LB@ |||||||||:@LB@ AAUAAGGGGU@LB@3'-AUU...UAGAG AAAGA...CAA-5'@LB@ | |@LB@ 48 37@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -13.6226 kcal/mol@LB@Unfolding Energy - mRNA 1.45475 kcal/mol@LB@Unfolding Energy - sRNA 3.86656 kcal/mol@LB@@LB@Position - mRNA 265 -- 274@LB@Position - sRNA 38 -- 47@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 38 -- 44@LB@ |
